Wall clock time and date at job start Tue Mar 31 2020 11:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47229 * 2 1 4 4 C 1.52995 * 109.47528 * 120.00212 * 2 1 3 5 5 C 1.53006 * 109.47119 * 65.80131 * 4 2 1 6 6 H 1.08993 * 109.47233 * 304.14420 * 5 4 2 7 7 C 1.50701 * 109.47160 * 184.13568 * 5 4 2 8 8 O 1.21209 * 119.99736 * 240.00117 * 7 5 4 9 9 O 1.34303 * 119.99811 * 60.00741 * 7 5 4 10 10 C 1.34920 * 116.99759 * 179.97438 * 9 7 5 11 11 H 1.07995 * 120.00350 * 359.97438 * 10 9 7 12 12 C 1.38754 * 119.99939 * 179.97438 * 10 9 7 13 13 N 1.31442 * 120.00040 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99904 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47065 * 60.00548 * 14 12 10 16 16 H 1.48500 * 109.47153 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47084 * 300.00142 * 14 12 10 18 18 N 1.46503 * 109.46523 * 64.14100 * 5 4 2 19 19 C 1.46737 * 125.61930 * 235.09858 * 18 5 4 20 20 C 1.50826 * 106.25129 * 179.97438 * 19 18 5 21 21 C 1.37582 * 133.24333 * 180.02562 * 20 19 18 22 22 C 1.38464 * 119.95846 * 179.97438 * 21 20 19 23 23 C 1.38388 * 120.18923 * 0.02562 * 22 21 20 24 24 C 1.37938 * 120.31974 * 0.02562 * 23 22 21 25 25 C 1.39618 * 119.82844 * 359.97438 * 24 23 22 26 26 C 1.34420 * 125.62948 * 55.09388 * 18 5 4 27 27 O 1.21551 * 124.85421 * 0.02703 * 26 18 5 28 28 H 1.09005 * 109.47283 * 299.99973 * 1 2 3 29 29 H 1.09003 * 109.47120 * 59.99655 * 1 2 3 30 30 H 1.09002 * 109.47282 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47245 * 240.00583 * 2 1 3 32 32 H 1.08996 * 109.47008 * 175.05367 * 3 2 1 33 33 H 1.08996 * 109.47361 * 295.05942 * 3 2 1 34 34 H 1.08999 * 109.46931 * 55.05859 * 3 2 1 35 35 H 1.09007 * 109.47026 * 305.80724 * 4 2 1 36 36 H 1.09001 * 109.47920 * 185.80588 * 4 2 1 37 37 H 0.97001 * 120.00058 * 179.97438 * 13 12 10 38 38 H 1.08996 * 110.10009 * 60.80126 * 19 18 5 39 39 H 1.09003 * 110.09979 * 299.19455 * 19 18 5 40 40 H 1.07996 * 120.01794 * 359.97438 * 21 20 19 41 41 H 1.08003 * 119.90597 * 180.27457 * 22 21 20 42 42 H 1.07998 * 119.83942 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.08477 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6526 -2.1998 1.1783 6 1 0.5737 -2.2869 1.0509 7 6 2.0653 -2.8888 2.4535 8 8 2.8482 -3.8134 2.4167 9 8 1.5654 -2.4785 3.6306 10 6 1.9755 -3.1385 4.7336 11 1 2.6748 -3.9567 4.6446 12 6 1.4987 -2.7661 5.9823 13 7 0.6479 -1.7700 6.0906 14 14 2.0659 -3.6803 7.5094 15 1 3.5405 -3.5614 7.6384 16 1 1.4148 -3.0934 8.7081 17 1 1.6929 -5.1131 7.3956 18 7 2.3309 -2.8283 0.0421 19 6 1.6745 -3.5649 -1.0441 20 6 2.7744 -4.0197 -1.9705 21 6 2.7818 -4.7395 -3.1430 22 6 3.9803 -5.0071 -3.7826 23 6 5.1722 -4.5530 -3.2457 24 6 5.1761 -3.8314 -2.0701 25 6 3.9717 -3.5575 -1.4193 26 6 3.6570 -2.8253 -0.1776 27 8 4.4795 -2.2961 0.5442 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1264 1.4438 0.0886 33 1 1.7508 1.9302 -0.9309 34 1 1.6062 1.9813 0.8424 35 1 1.5943 -0.2710 2.1362 36 1 3.1251 -0.6321 1.3027 37 1 0.3143 -1.5099 6.9635 38 1 0.9837 -2.9110 -1.5762 39 1 1.1415 -4.4271 -0.6433 40 1 1.8532 -5.0956 -3.5642 41 1 3.9847 -5.5684 -4.7053 42 1 6.1038 -4.7653 -3.7490 43 1 6.1086 -3.4791 -1.6542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923620951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:17 Heat of formation + Delta-G solvation = -76.783548 kcal Electronic energy + Delta-G solvation = -27181.436324 eV Core-core repulsion = 23385.353925 eV Total energy + Delta-G solvation = -3796.082399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15964 -39.13485 -37.95010 -36.56011 -35.52960 -34.98213 -32.19394 -31.93275 -31.16732 -29.05363 -27.08901 -26.56512 -25.54753 -24.60428 -23.00369 -21.75863 -20.70093 -19.85879 -19.03341 -17.69480 -17.12118 -16.73512 -16.29573 -15.87877 -15.55657 -14.99818 -14.61012 -14.42430 -14.34394 -14.20225 -14.15332 -13.58795 -13.52535 -13.20913 -13.07599 -12.85722 -12.53804 -12.13962 -12.05684 -11.99965 -11.85216 -11.57171 -11.51314 -11.17250 -11.12652 -10.70525 -10.57557 -10.45598 -10.43291 -10.27312 -9.79420 -9.41145 -9.27890 -9.08407 -8.91034 -8.53255 -8.38291 -6.37296 -4.04401 0.77621 1.17078 2.80293 3.02547 3.15741 3.21852 3.26385 3.52340 3.83856 3.98907 4.10010 4.44084 4.59461 4.76356 4.82773 4.98390 5.09430 5.12248 5.16230 5.19752 5.24781 5.30950 5.35876 5.41586 5.55086 5.66298 5.75702 5.80809 5.85250 5.93911 6.02028 6.07139 6.14979 6.17122 6.21507 6.25071 6.37975 6.46645 6.61325 6.66429 6.69707 6.94572 7.29033 7.43347 7.99466 8.46797 8.76019 9.11739 9.87686 10.80448 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.004214 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.193176 B = 6643.108099 C = 7844.350655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.190 3.810 6 H 0.117 0.883 7 C 0.386 3.614 8 O -0.538 6.538 9 O -0.211 6.211 10 C -0.379 4.379 11 H 0.093 0.907 12 C 0.043 3.957 13 N -0.866 5.866 14 Si 0.942 3.058 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.270 1.270 18 N -0.595 5.595 19 C 0.143 3.857 20 C -0.081 4.081 21 C -0.104 4.104 22 C -0.095 4.095 23 C -0.130 4.130 24 C -0.050 4.050 25 C -0.144 4.144 26 C 0.566 3.434 27 O -0.507 6.507 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.269 0.731 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 -0.579 -20.373 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.165 4.165 5 C 0.087 3.913 6 H 0.134 0.866 7 C 0.230 3.770 8 O -0.433 6.433 9 O -0.118 6.118 10 C -0.455 4.455 11 H 0.111 0.889 12 C -0.160 4.160 13 N -0.503 5.503 14 Si 0.767 3.233 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.196 1.196 18 N -0.329 5.329 19 C 0.020 3.980 20 C -0.082 4.082 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.148 4.148 24 C -0.069 4.069 25 C -0.147 4.147 26 C 0.354 3.646 27 O -0.382 6.382 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.322 -0.350 -19.678 19.684 hybrid contribution 0.228 -0.658 0.791 1.054 sum 0.549 -1.008 -18.887 18.922 Atomic orbital electron populations 1.21922 0.95219 1.01654 1.01875 1.21059 0.95724 0.96197 0.98036 1.21799 1.01183 0.95800 1.01394 1.22040 1.03816 0.91324 0.99293 1.20243 0.97312 0.92281 0.81462 0.86585 1.23301 0.82524 0.84538 0.86651 1.90581 1.35125 1.30241 1.87356 1.83851 1.60235 1.54514 1.13180 1.21147 1.27259 1.15495 0.81635 0.88926 1.25283 0.95995 0.96606 0.98144 1.69976 1.29176 1.26097 1.25085 0.85766 0.79088 0.79184 0.79280 1.19489 1.20355 1.19562 1.47521 1.07113 1.55022 1.23253 1.20471 0.93853 0.96977 0.86732 1.20495 0.95309 0.97237 0.95209 1.20265 0.98773 0.99063 0.94150 1.21259 0.92096 0.98529 0.99483 1.21098 0.98556 0.99027 0.96076 1.20886 0.96999 0.95316 0.93671 1.20565 0.94671 1.02188 0.97311 1.18063 0.82356 0.79742 0.84449 1.90762 1.50824 1.45812 1.50802 0.91988 0.93005 0.92779 0.91620 0.92709 0.93067 0.92377 0.88669 0.89628 0.92099 0.88655 0.88720 0.85253 0.85231 0.85229 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.97 37.16 0.33 -1.42 16 2 C -0.09 -1.25 2.86 -90.62 -0.26 -1.50 16 3 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 4 C -0.13 -2.26 4.01 -26.73 -0.11 -2.37 16 5 C 0.19 3.62 2.71 -69.08 -0.19 3.43 16 6 H 0.12 1.87 6.37 -51.93 -0.33 1.54 16 7 C 0.39 9.93 7.04 36.01 0.25 10.19 16 8 O -0.54 -15.44 14.65 -21.16 -0.31 -15.75 16 9 O -0.21 -6.13 9.57 -20.68 -0.20 -6.32 16 10 C -0.38 -11.52 9.64 30.92 0.30 -11.22 16 11 H 0.09 2.88 6.86 -52.49 -0.36 2.52 16 12 C 0.04 1.25 5.49 -17.53 -0.10 1.15 16 13 N -0.87 -25.49 13.67 55.48 0.76 -24.73 16 14 Si 0.94 21.91 29.55 -169.99 -5.02 16.89 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 N -0.60 -10.31 1.91 -169.86 -0.32 -10.63 16 19 C 0.14 1.78 7.36 -5.00 -0.04 1.74 16 20 C -0.08 -1.01 6.38 -104.26 -0.66 -1.68 16 21 C -0.10 -0.98 10.03 -39.74 -0.40 -1.38 16 22 C -0.10 -0.82 10.05 -39.44 -0.40 -1.22 16 23 C -0.13 -1.26 10.02 -39.64 -0.40 -1.66 16 24 C -0.05 -0.65 10.10 -39.18 -0.40 -1.04 16 25 C -0.14 -2.23 6.26 -105.05 -0.66 -2.89 16 26 C 0.57 11.02 6.73 -12.63 -0.08 10.93 16 27 O -0.51 -11.93 15.74 3.89 0.06 -11.87 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.60 6.51 -51.93 -0.34 0.26 16 31 H 0.07 0.89 7.57 -51.93 -0.39 0.50 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.81 8.02 -51.92 -0.42 1.40 16 36 H 0.09 1.75 6.45 -51.93 -0.34 1.42 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -37.36 362.55 -7.99 -45.35 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.96 Total: 1.99 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.46 Total: -0.40 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.43 Total: -35.36 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.45 Total: -33.93 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.36 -7.99 -45.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923620951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.438 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds