Wall clock time and date at job start Tue Mar 31 2020 11:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47229 * 2 1 4 4 C 1.52995 * 109.47528 * 120.00212 * 2 1 3 5 5 C 1.53006 * 109.47119 * 65.80131 * 4 2 1 6 6 H 1.08993 * 109.47233 * 304.14420 * 5 4 2 7 7 C 1.50701 * 109.47160 * 184.13568 * 5 4 2 8 8 O 1.21209 * 119.99736 * 240.00117 * 7 5 4 9 9 O 1.34303 * 119.99811 * 60.00741 * 7 5 4 10 10 C 1.34920 * 116.99759 * 179.97438 * 9 7 5 11 11 H 1.07995 * 120.00350 * 359.97438 * 10 9 7 12 12 C 1.38754 * 119.99939 * 179.97438 * 10 9 7 13 13 N 1.31442 * 120.00040 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99904 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47065 * 60.00548 * 14 12 10 16 16 H 1.48500 * 109.47153 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47084 * 300.00142 * 14 12 10 18 18 N 1.46503 * 109.46523 * 64.14100 * 5 4 2 19 19 C 1.46737 * 125.61930 * 235.09858 * 18 5 4 20 20 C 1.50826 * 106.25129 * 179.97438 * 19 18 5 21 21 C 1.37582 * 133.24333 * 180.02562 * 20 19 18 22 22 C 1.38464 * 119.95846 * 179.97438 * 21 20 19 23 23 C 1.38388 * 120.18923 * 0.02562 * 22 21 20 24 24 C 1.37938 * 120.31974 * 0.02562 * 23 22 21 25 25 C 1.39618 * 119.82844 * 359.97438 * 24 23 22 26 26 C 1.34420 * 125.62948 * 55.09388 * 18 5 4 27 27 O 1.21551 * 124.85421 * 0.02703 * 26 18 5 28 28 H 1.09005 * 109.47283 * 299.99973 * 1 2 3 29 29 H 1.09003 * 109.47120 * 59.99655 * 1 2 3 30 30 H 1.09002 * 109.47282 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47245 * 240.00583 * 2 1 3 32 32 H 1.08996 * 109.47008 * 175.05367 * 3 2 1 33 33 H 1.08996 * 109.47361 * 295.05942 * 3 2 1 34 34 H 1.08999 * 109.46931 * 55.05859 * 3 2 1 35 35 H 1.09007 * 109.47026 * 305.80724 * 4 2 1 36 36 H 1.09001 * 109.47920 * 185.80588 * 4 2 1 37 37 H 0.97001 * 120.00058 * 179.97438 * 13 12 10 38 38 H 1.08996 * 110.10009 * 60.80126 * 19 18 5 39 39 H 1.09003 * 110.09979 * 299.19455 * 19 18 5 40 40 H 1.07996 * 120.01794 * 359.97438 * 21 20 19 41 41 H 1.08003 * 119.90597 * 180.27457 * 22 21 20 42 42 H 1.07998 * 119.83942 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.08477 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6526 -2.1998 1.1783 6 1 0.5737 -2.2869 1.0509 7 6 2.0653 -2.8888 2.4535 8 8 2.8482 -3.8134 2.4167 9 8 1.5654 -2.4785 3.6306 10 6 1.9755 -3.1385 4.7336 11 1 2.6748 -3.9567 4.6446 12 6 1.4987 -2.7661 5.9823 13 7 0.6479 -1.7700 6.0906 14 14 2.0659 -3.6803 7.5094 15 1 3.5405 -3.5614 7.6384 16 1 1.4148 -3.0934 8.7081 17 1 1.6929 -5.1131 7.3956 18 7 2.3309 -2.8283 0.0421 19 6 1.6745 -3.5649 -1.0441 20 6 2.7744 -4.0197 -1.9705 21 6 2.7818 -4.7395 -3.1430 22 6 3.9803 -5.0071 -3.7826 23 6 5.1722 -4.5530 -3.2457 24 6 5.1761 -3.8314 -2.0701 25 6 3.9717 -3.5575 -1.4193 26 6 3.6570 -2.8253 -0.1776 27 8 4.4795 -2.2961 0.5442 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1264 1.4438 0.0886 33 1 1.7508 1.9302 -0.9309 34 1 1.6062 1.9813 0.8424 35 1 1.5943 -0.2710 2.1362 36 1 3.1251 -0.6321 1.3027 37 1 0.3143 -1.5099 6.9635 38 1 0.9837 -2.9110 -1.5762 39 1 1.1415 -4.4271 -0.6433 40 1 1.8532 -5.0956 -3.5642 41 1 3.9847 -5.5684 -4.7053 42 1 6.1038 -4.7653 -3.7490 43 1 6.1086 -3.4791 -1.6542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923620951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:16 Heat of formation + Delta-G solvation = -100.001951 kcal Electronic energy + Delta-G solvation = -27182.443149 eV Core-core repulsion = 23385.353925 eV Total energy + Delta-G solvation = -3797.089225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.42754 -40.98249 -39.25445 -38.00310 -37.21751 -36.62515 -34.36030 -33.25027 -32.05095 -30.27351 -28.08837 -27.73815 -27.55915 -26.01162 -24.34194 -22.73636 -22.13406 -21.16744 -20.45199 -19.92653 -18.81049 -18.09170 -17.52176 -17.25763 -16.86125 -16.61918 -16.29534 -16.12020 -15.82510 -15.46021 -15.16407 -14.94386 -14.72950 -14.52266 -14.37495 -14.04797 -13.80518 -13.59440 -13.47805 -13.26673 -13.11696 -13.04238 -12.77650 -12.66313 -12.42957 -12.21729 -12.13045 -12.02088 -11.87074 -11.72950 -11.59898 -11.14662 -10.83320 -10.73696 -10.19038 -9.91000 -9.66037 -8.58171 -6.38245 -0.19420 0.35139 1.23957 1.27119 1.40782 1.51493 1.56452 1.84265 2.11348 2.63954 2.85168 2.92163 3.14779 3.39364 3.69265 3.80088 3.89903 3.94586 4.03926 4.18388 4.31773 4.37302 4.41820 4.45527 4.50587 4.56648 4.64891 4.73054 4.78228 4.85129 4.97645 4.99927 5.02873 5.04202 5.08988 5.20538 5.24491 5.38413 5.40905 5.45633 5.49130 5.56843 5.78295 5.90931 5.97129 6.58618 6.85690 7.05952 7.67933 8.61487 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.004214 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.193176 B = 6643.108099 C = 7844.350655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.143 4.143 4 C -0.118 4.118 5 C 0.200 3.800 6 H 0.153 0.847 7 C 0.379 3.621 8 O -0.575 6.575 9 O -0.234 6.234 10 C -0.424 4.424 11 H 0.071 0.929 12 C 0.003 3.997 13 N -0.895 5.895 14 Si 1.013 2.987 15 H -0.269 1.269 16 H -0.252 1.252 17 H -0.260 1.260 18 N -0.597 5.597 19 C 0.135 3.865 20 C -0.079 4.079 21 C -0.096 4.096 22 C -0.077 4.077 23 C -0.125 4.125 24 C -0.070 4.070 25 C -0.190 4.190 26 C 0.547 3.453 27 O -0.574 6.574 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.281 0.719 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.170 0.830 41 H 0.175 0.825 42 H 0.160 0.840 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 -1.831 -23.507 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.201 4.201 4 C -0.156 4.156 5 C 0.096 3.904 6 H 0.170 0.830 7 C 0.225 3.775 8 O -0.472 6.472 9 O -0.141 6.141 10 C -0.500 4.500 11 H 0.089 0.911 12 C -0.198 4.198 13 N -0.532 5.532 14 Si 0.832 3.168 15 H -0.194 1.194 16 H -0.176 1.176 17 H -0.184 1.184 18 N -0.329 5.329 19 C 0.014 3.986 20 C -0.080 4.080 21 C -0.114 4.114 22 C -0.095 4.095 23 C -0.143 4.143 24 C -0.089 4.089 25 C -0.193 4.193 26 C 0.338 3.662 27 O -0.454 6.454 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.123 0.877 40 H 0.188 0.812 41 H 0.192 0.808 42 H 0.177 0.823 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.662 -1.604 -22.864 22.980 hybrid contribution 0.881 -0.313 1.622 1.872 sum -0.782 -1.917 -21.242 21.342 Atomic orbital electron populations 1.21908 0.92927 1.02572 1.02889 1.21008 0.97444 0.96102 0.95375 1.21799 1.00066 0.95342 1.02856 1.21942 1.01380 0.91189 1.01133 1.20311 0.99104 0.92091 0.78909 0.82983 1.24794 0.81062 0.83881 0.87760 1.90537 1.36550 1.32065 1.88020 1.83870 1.61034 1.55122 1.14084 1.21278 1.28943 1.16530 0.83260 0.91095 1.26444 0.95373 0.97225 1.00800 1.70042 1.29486 1.26921 1.26749 0.84764 0.78649 0.78273 0.75113 1.19400 1.17574 1.18442 1.47673 1.07073 1.54795 1.23324 1.20886 0.94302 0.97776 0.85633 1.20658 0.93462 0.97679 0.96203 1.20763 1.00943 0.97217 0.92458 1.21844 0.90919 0.96599 1.00137 1.21464 1.00829 0.97504 0.94483 1.21034 0.95864 0.96732 0.95283 1.20418 0.97177 1.04910 0.96810 1.18968 0.82579 0.79198 0.85409 1.90700 1.52578 1.48785 1.53335 0.92860 0.90103 0.91909 0.91067 0.94460 0.90182 0.92503 0.90687 0.93397 0.90994 0.84366 0.87713 0.81217 0.80802 0.82260 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.97 71.98 0.65 -2.43 16 2 C -0.08 -2.17 2.86 -10.79 -0.03 -2.20 16 3 C -0.14 -3.57 9.19 71.98 0.66 -2.91 16 4 C -0.12 -4.50 4.01 30.59 0.12 -4.38 16 5 C 0.20 7.93 2.71 44.25 0.12 8.05 16 6 H 0.15 4.85 6.37 -2.39 -0.02 4.83 16 7 C 0.38 20.88 7.04 71.24 0.50 21.38 16 8 O -0.57 -35.51 14.65 22.80 0.33 -35.17 16 9 O -0.23 -14.46 9.57 14.95 0.14 -14.32 16 10 C -0.42 -27.31 9.64 67.94 0.66 -26.65 16 11 H 0.07 4.74 6.86 -2.91 -0.02 4.72 16 12 C 0.00 0.15 5.49 84.87 0.47 0.62 16 13 N -0.90 -53.77 13.67 21.62 0.30 -53.47 16 14 Si 1.01 45.51 29.55 68.60 2.03 47.53 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 16 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 18 N -0.60 -21.23 1.91 -809.78 -1.54 -22.78 16 19 C 0.13 3.09 7.36 85.63 0.63 3.72 16 20 C -0.08 -1.79 6.38 -19.63 -0.13 -1.92 16 21 C -0.10 -1.35 10.03 22.17 0.22 -1.13 16 22 C -0.08 -0.93 10.05 22.36 0.22 -0.71 16 23 C -0.13 -2.09 10.02 22.23 0.22 -1.86 16 24 C -0.07 -1.86 10.10 22.53 0.23 -1.63 16 25 C -0.19 -6.04 6.26 -20.14 -0.13 -6.16 16 26 C 0.55 22.86 6.73 86.75 0.58 23.45 16 27 O -0.57 -29.98 15.74 -2.51 -0.04 -30.02 16 28 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.21 6.51 -2.39 -0.02 1.19 16 31 H 0.07 1.86 7.57 -2.38 -0.02 1.84 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 3.10 8.02 -2.38 -0.02 3.08 16 36 H 0.05 2.18 6.45 -2.39 -0.02 2.16 16 37 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 42 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 43 H 0.12 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -92.07 362.55 7.24 -84.84 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.02 Total: 18.17 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 5.00 Total: 5.22 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -1.25 Total: -76.25 kcal Atomic # 8 Polarization: -79.95 SS G_CDS: 0.44 Total: -79.51 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -92.07 7.24 -84.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923620951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.163 kcal (2) G-P(sol) polarization free energy of solvation -92.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds