Wall clock time and date at job start Tue Mar 31 2020 11:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47020 * 2 1 4 4 N 1.46901 * 109.46736 * 119.99525 * 2 1 3 5 5 C 1.46896 * 111.00245 * 300.00238 * 4 2 1 6 6 C 1.53002 * 109.47246 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.46986 * 60.00111 * 6 5 4 8 8 O 1.42898 * 109.47113 * 300.00070 * 6 5 4 9 9 C 1.50706 * 109.46931 * 179.97438 * 6 5 4 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 6 5 11 11 C 1.37879 * 119.99398 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.46845 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47399 * 299.99813 * 13 11 9 16 16 H 1.48498 * 109.47295 * 60.00420 * 13 11 9 17 17 C 1.50694 * 109.47086 * 239.99597 * 2 1 3 18 18 C 1.38263 * 120.00001 * 239.72544 * 17 2 1 19 19 C 1.38213 * 120.00252 * 179.81384 * 18 17 2 20 20 C 1.38254 * 119.99569 * 0.42107 * 19 18 17 21 21 C 1.38220 * 120.00221 * 359.81319 * 20 19 18 22 22 C 1.50697 * 119.99754 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46862 * 270.01838 * 22 21 20 24 24 F 1.39900 * 109.47757 * 30.01836 * 22 21 20 25 25 F 1.39905 * 109.47063 * 150.02366 * 22 21 20 26 26 C 1.38210 * 120.00134 * 60.00330 * 17 2 1 27 27 H 1.09000 * 109.47164 * 300.00784 * 1 2 3 28 28 H 1.09006 * 109.46254 * 60.00308 * 1 2 3 29 29 H 1.08999 * 109.46879 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46849 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46801 * 299.99123 * 3 2 1 32 32 H 1.09000 * 109.47073 * 59.99797 * 3 2 1 33 33 H 1.00901 * 110.99921 * 176.04705 * 4 2 1 34 34 H 1.09004 * 109.47535 * 59.99890 * 5 4 2 35 35 H 1.08996 * 109.47194 * 300.00212 * 5 4 2 36 36 H 0.96701 * 113.99881 * 299.99463 * 8 6 5 37 37 H 0.97000 * 119.99706 * 359.97438 * 12 11 9 38 38 H 1.08000 * 119.99612 * 0.02562 * 18 17 2 39 39 H 1.07995 * 119.99931 * 180.21596 * 19 18 17 40 40 H 1.07999 * 120.00056 * 179.79323 * 20 19 18 41 41 H 1.07998 * 119.99776 * 359.97438 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5486 -0.0263 2.4211 6 6 2.0770 -0.7748 3.6464 7 1 3.1669 -0.7750 3.6299 8 8 1.6001 -2.1216 3.6241 9 6 1.5942 -0.0910 4.8996 10 1 0.9723 0.7892 4.8291 11 6 1.9466 -0.5891 6.1360 12 7 2.7043 -1.6606 6.2218 13 14 1.3475 0.2581 7.6894 14 1 1.8616 -0.4676 8.8786 15 1 1.8427 1.6580 7.7122 16 1 -0.1373 0.2577 7.7123 17 6 2.0324 -0.7105 -1.2304 18 6 2.8320 -1.8313 -1.1034 19 6 3.2895 -2.4852 -2.2319 20 6 2.9548 -2.0134 -3.4876 21 6 2.1595 -0.8901 -3.6145 22 6 1.7952 -0.3756 -4.9833 23 9 2.7592 0.5454 -5.4069 24 9 1.7434 -1.4442 -5.8847 25 9 0.5449 0.2498 -4.9289 26 6 1.6986 -0.2383 -2.4857 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.0262 -0.7625 1.1911 34 1 0.4587 -0.0264 2.4379 35 1 1.9120 1.0012 2.4378 36 1 0.6362 -2.1978 3.6371 37 1 3.0150 -2.1006 5.4152 38 1 3.0961 -2.1978 -0.1225 39 1 3.9112 -3.3627 -2.1326 40 1 3.3151 -2.5224 -4.3694 41 1 1.0774 0.6395 -2.5848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929501092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:25 Heat of formation + Delta-G solvation = -183.758828 kcal Electronic energy + Delta-G solvation = -26844.117317 eV Core-core repulsion = 22501.539381 eV Total energy + Delta-G solvation = -4342.577936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.37423 -47.89239 -47.83712 -40.16903 -37.64062 -35.72336 -32.14446 -32.11503 -31.91319 -29.62810 -27.64218 -27.26522 -26.09120 -24.38713 -22.92753 -22.13945 -20.99899 -19.60751 -18.70766 -18.58369 -18.16805 -17.22137 -16.50988 -15.84762 -15.52136 -14.77046 -14.72922 -14.66878 -14.48582 -14.30225 -14.15063 -14.01320 -14.00200 -13.93380 -13.81323 -13.72422 -13.24370 -12.79050 -12.72851 -12.44448 -12.33060 -12.07696 -11.94655 -11.60567 -11.42680 -11.13601 -10.92661 -10.78652 -10.62946 -10.13823 -10.07556 -9.34903 -9.24465 -9.02079 -8.49973 -8.09499 -7.93981 -6.37808 -4.21719 0.79891 1.07127 2.44803 3.32748 3.39844 3.40742 3.50396 3.60139 3.79752 4.21418 4.31548 4.47047 4.52707 4.67490 4.84539 5.03380 5.12589 5.16376 5.21600 5.33232 5.49169 5.57051 5.63608 5.72343 5.75741 5.86841 5.93106 5.97095 6.06784 6.13559 6.19046 6.25111 6.35554 6.39118 6.62076 6.69706 7.38715 7.42124 7.70386 7.99436 8.32405 8.83419 9.18381 9.64676 11.02371 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.031856 B = 0.002685 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.745329 B =10425.257053 C =10870.061301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.146 3.854 3 C -0.180 4.180 4 N -0.669 5.669 5 C 0.038 3.962 6 C 0.219 3.781 7 H 0.043 0.957 8 O -0.572 6.572 9 C -0.652 4.652 10 H 0.048 0.952 11 C 0.035 3.965 12 N -0.892 5.892 13 Si 1.066 2.934 14 H -0.282 1.282 15 H -0.289 1.289 16 H -0.288 1.288 17 C -0.064 4.064 18 C -0.068 4.068 19 C -0.121 4.121 20 C -0.080 4.080 21 C -0.188 4.188 22 C 0.509 3.491 23 F -0.179 7.179 24 F -0.179 7.179 25 F -0.178 7.178 26 C -0.069 4.069 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.336 0.664 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.352 0.648 37 H 0.285 0.715 38 H 0.148 0.852 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 2.382 -21.359 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.054 3.946 3 C -0.239 4.239 4 N -0.300 5.300 5 C -0.091 4.091 6 C 0.161 3.839 7 H 0.061 0.939 8 O -0.376 6.376 9 C -0.690 4.690 10 H 0.066 0.934 11 C -0.174 4.174 12 N -0.526 5.526 13 Si 0.894 3.106 14 H -0.207 1.207 15 H -0.215 1.215 16 H -0.214 1.214 17 C -0.064 4.064 18 C -0.086 4.086 19 C -0.139 4.139 20 C -0.098 4.098 21 C -0.189 4.189 22 C 0.455 3.545 23 F -0.160 7.160 24 F -0.160 7.160 25 F -0.160 7.160 26 C -0.087 4.087 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.197 0.803 37 H 0.096 0.904 38 H 0.165 0.835 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.882 1.721 -19.762 19.856 hybrid contribution -0.163 1.303 -1.998 2.391 sum -1.045 3.024 -21.760 21.994 Atomic orbital electron populations 1.21886 0.92853 1.02821 1.01710 1.19781 0.95718 0.90716 0.88403 1.22586 1.01435 0.97206 1.02629 1.60786 1.15741 1.52760 1.00697 1.22846 1.00389 0.96026 0.89817 1.19464 0.94295 0.80040 0.90116 0.93883 1.86452 1.24588 1.29567 1.96984 1.22414 1.38064 1.15739 0.92797 0.93397 1.25760 0.94272 0.95846 1.01509 1.70637 1.30215 1.17413 1.34330 0.83616 0.76010 0.75315 0.75680 1.20731 1.21527 1.21411 1.19842 0.97090 0.95921 0.93555 1.21527 0.93747 0.93332 1.00015 1.21211 1.00548 1.00494 0.91604 1.20897 0.95824 0.94227 0.98839 1.19832 1.06807 1.01088 0.91196 1.18344 0.74507 0.75352 0.86276 1.93219 1.63742 1.67610 1.91442 1.93179 1.96162 1.56194 1.70493 1.93189 1.42860 1.83238 1.96675 1.20702 0.98044 0.99066 0.90898 0.91624 0.92682 0.91586 0.92550 0.92350 0.91262 0.84547 0.91402 0.95243 0.80306 0.90361 0.83483 0.84810 0.85089 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.05 37.16 0.30 -1.42 16 2 C 0.15 1.90 0.79 -132.75 -0.11 1.80 16 3 C -0.18 -2.21 8.04 37.16 0.30 -1.91 16 4 N -0.67 -10.52 4.97 -101.14 -0.50 -11.02 16 5 C 0.04 0.71 4.50 -3.83 -0.02 0.69 16 6 C 0.22 5.22 2.63 -27.88 -0.07 5.14 16 7 H 0.04 1.12 8.01 -51.93 -0.42 0.70 16 8 O -0.57 -13.90 11.88 -35.23 -0.42 -14.32 16 9 C -0.65 -17.55 8.76 -34.44 -0.30 -17.86 16 10 H 0.05 1.27 7.74 -52.49 -0.41 0.87 16 11 C 0.04 0.98 5.40 -17.82 -0.10 0.89 16 12 N -0.89 -26.72 13.53 55.43 0.75 -25.97 16 13 Si 1.07 24.51 29.90 -169.99 -5.08 19.43 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 17 C -0.06 -0.77 4.77 -104.63 -0.50 -1.27 16 18 C -0.07 -0.81 9.14 -39.58 -0.36 -1.17 16 19 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 20 C -0.08 -0.79 9.40 -39.58 -0.37 -1.16 16 21 C -0.19 -2.04 5.45 -104.62 -0.57 -2.61 16 22 C 0.51 5.40 3.36 36.00 0.12 5.52 16 23 F -0.18 -1.97 17.30 2.25 0.04 -1.93 16 24 F -0.18 -1.88 16.46 2.25 0.04 -1.84 16 25 F -0.18 -1.95 16.46 2.25 0.04 -1.92 16 26 C -0.07 -0.77 8.07 -39.59 -0.32 -1.09 16 27 H 0.06 0.88 6.40 -51.93 -0.33 0.55 16 28 H 0.05 0.59 7.39 -51.93 -0.38 0.21 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.62 7.39 -51.93 -0.38 0.24 16 32 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 33 H 0.34 5.24 7.54 -39.29 -0.30 4.95 16 34 H 0.07 1.29 6.30 -51.93 -0.33 0.96 16 35 H 0.03 0.56 6.30 -51.93 -0.33 0.23 16 36 H 0.35 7.88 9.04 45.56 0.41 8.29 16 37 H 0.28 8.66 6.47 -40.82 -0.26 8.39 16 38 H 0.15 1.84 6.40 -52.49 -0.34 1.50 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.13 1.05 7.60 -52.49 -0.40 0.65 16 41 H 0.13 1.34 6.65 -52.49 -0.35 0.99 16 LS Contribution 344.25 15.07 5.19 5.19 Total: -1.00 -29.41 344.25 -6.55 -35.97 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -4.21 Total: 12.47 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -2.40 Total: -16.06 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.25 Total: -36.99 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.42 Total: -14.32 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.11 Total: -5.69 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.08 Total: 19.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.41 -6.55 -35.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929501092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.789 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds