Wall clock time and date at job start Tue Mar 31 2020 11:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47020 * 2 1 4 4 N 1.46901 * 109.46736 * 119.99525 * 2 1 3 5 5 C 1.46896 * 111.00245 * 300.00238 * 4 2 1 6 6 C 1.53002 * 109.47246 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.46986 * 60.00111 * 6 5 4 8 8 O 1.42898 * 109.47113 * 300.00070 * 6 5 4 9 9 C 1.50706 * 109.46931 * 179.97438 * 6 5 4 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 6 5 11 11 C 1.37879 * 119.99398 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.46845 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47399 * 299.99813 * 13 11 9 16 16 H 1.48498 * 109.47295 * 60.00420 * 13 11 9 17 17 C 1.50694 * 109.47086 * 239.99597 * 2 1 3 18 18 C 1.38263 * 120.00001 * 239.72544 * 17 2 1 19 19 C 1.38213 * 120.00252 * 179.81384 * 18 17 2 20 20 C 1.38254 * 119.99569 * 0.42107 * 19 18 17 21 21 C 1.38220 * 120.00221 * 359.81319 * 20 19 18 22 22 C 1.50697 * 119.99754 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46862 * 270.01838 * 22 21 20 24 24 F 1.39900 * 109.47757 * 30.01836 * 22 21 20 25 25 F 1.39905 * 109.47063 * 150.02366 * 22 21 20 26 26 C 1.38210 * 120.00134 * 60.00330 * 17 2 1 27 27 H 1.09000 * 109.47164 * 300.00784 * 1 2 3 28 28 H 1.09006 * 109.46254 * 60.00308 * 1 2 3 29 29 H 1.08999 * 109.46879 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46849 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46801 * 299.99123 * 3 2 1 32 32 H 1.09000 * 109.47073 * 59.99797 * 3 2 1 33 33 H 1.00901 * 110.99921 * 176.04705 * 4 2 1 34 34 H 1.09004 * 109.47535 * 59.99890 * 5 4 2 35 35 H 1.08996 * 109.47194 * 300.00212 * 5 4 2 36 36 H 0.96701 * 113.99881 * 299.99463 * 8 6 5 37 37 H 0.97000 * 119.99706 * 359.97438 * 12 11 9 38 38 H 1.08000 * 119.99612 * 0.02562 * 18 17 2 39 39 H 1.07995 * 119.99931 * 180.21596 * 19 18 17 40 40 H 1.07999 * 120.00056 * 179.79323 * 20 19 18 41 41 H 1.07998 * 119.99776 * 359.97438 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5486 -0.0263 2.4211 6 6 2.0770 -0.7748 3.6464 7 1 3.1669 -0.7750 3.6299 8 8 1.6001 -2.1216 3.6241 9 6 1.5942 -0.0910 4.8996 10 1 0.9723 0.7892 4.8291 11 6 1.9466 -0.5891 6.1360 12 7 2.7043 -1.6606 6.2218 13 14 1.3475 0.2581 7.6894 14 1 1.8616 -0.4676 8.8786 15 1 1.8427 1.6580 7.7122 16 1 -0.1373 0.2577 7.7123 17 6 2.0324 -0.7105 -1.2304 18 6 2.8320 -1.8313 -1.1034 19 6 3.2895 -2.4852 -2.2319 20 6 2.9548 -2.0134 -3.4876 21 6 2.1595 -0.8901 -3.6145 22 6 1.7952 -0.3756 -4.9833 23 9 2.7592 0.5454 -5.4069 24 9 1.7434 -1.4442 -5.8847 25 9 0.5449 0.2498 -4.9289 26 6 1.6986 -0.2383 -2.4857 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.0262 -0.7625 1.1911 34 1 0.4587 -0.0264 2.4379 35 1 1.9120 1.0012 2.4378 36 1 0.6362 -2.1978 3.6371 37 1 3.0150 -2.1006 5.4152 38 1 3.0961 -2.1978 -0.1225 39 1 3.9112 -3.3627 -2.1326 40 1 3.3151 -2.5224 -4.3694 41 1 1.0774 0.6395 -2.5848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929501092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:25 Heat of formation + Delta-G solvation = -202.067326 kcal Electronic energy + Delta-G solvation = -26844.911233 eV Core-core repulsion = 22501.539381 eV Total energy + Delta-G solvation = -4343.371852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.20546 -48.72045 -48.67405 -41.11395 -38.93120 -37.39983 -34.22244 -33.21794 -32.96636 -30.67008 -29.25954 -28.29759 -27.04064 -25.98574 -24.23119 -22.99249 -22.62969 -20.65976 -19.54319 -19.48484 -19.33688 -18.95425 -17.57650 -17.04421 -16.62375 -16.25056 -15.92635 -15.63363 -15.59823 -15.51591 -15.22724 -15.14639 -15.08900 -14.93855 -14.83444 -14.70125 -14.51826 -14.25904 -13.89253 -13.78753 -13.49657 -13.44811 -12.99241 -12.78961 -12.63768 -12.51652 -12.21892 -12.12660 -12.00076 -11.91836 -11.67750 -11.12642 -10.61367 -10.19921 -10.04440 -9.89773 -9.28636 -8.58915 -6.43874 -0.05692 0.23717 1.54330 1.61355 1.61583 1.80696 2.47364 2.56676 2.67124 2.95136 3.15457 3.21492 3.38805 3.52781 3.83270 4.02615 4.04587 4.07511 4.13473 4.26463 4.33438 4.39408 4.54438 4.58989 4.65646 4.71889 4.77114 4.84726 4.94466 4.98308 5.11191 5.20628 5.27101 5.36123 5.45117 5.50688 5.77150 5.87187 6.08029 6.22170 6.39461 6.60350 7.26928 7.53828 8.79161 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.031856 B = 0.002685 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.745329 B =10425.257053 C =10870.061301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.147 3.853 3 C -0.176 4.176 4 N -0.670 5.670 5 C 0.060 3.940 6 C 0.217 3.783 7 H 0.016 0.984 8 O -0.581 6.581 9 C -0.660 4.660 10 H 0.050 0.950 11 C -0.017 4.017 12 N -0.922 5.922 13 Si 1.113 2.887 14 H -0.287 1.287 15 H -0.271 1.271 16 H -0.269 1.269 17 C -0.073 4.073 18 C -0.082 4.082 19 C -0.117 4.117 20 C -0.077 4.077 21 C -0.193 4.193 22 C 0.514 3.486 23 F -0.181 7.181 24 F -0.178 7.178 25 F -0.180 7.180 26 C -0.071 4.071 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.336 0.664 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.360 0.640 37 H 0.268 0.732 38 H 0.135 0.865 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 3.119 -22.703 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 C -0.234 4.234 4 N -0.301 5.301 5 C -0.069 4.069 6 C 0.159 3.841 7 H 0.033 0.967 8 O -0.386 6.386 9 C -0.698 4.698 10 H 0.069 0.931 11 C -0.219 4.219 12 N -0.558 5.558 13 Si 0.935 3.065 14 H -0.213 1.213 15 H -0.196 1.196 16 H -0.194 1.194 17 C -0.074 4.074 18 C -0.100 4.100 19 C -0.135 4.135 20 C -0.095 4.095 21 C -0.194 4.194 22 C 0.460 3.540 23 F -0.162 7.162 24 F -0.159 7.159 25 F -0.162 7.162 26 C -0.089 4.089 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.154 0.846 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.205 0.795 37 H 0.079 0.921 38 H 0.153 0.847 39 H 0.174 0.826 40 H 0.170 0.830 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.540 2.470 -21.140 21.340 hybrid contribution 0.055 1.041 -1.691 1.986 sum -1.486 3.510 -22.831 23.147 Atomic orbital electron populations 1.21877 0.92474 1.02349 1.02359 1.19815 0.95960 0.91098 0.87546 1.22532 1.01255 0.96603 1.03041 1.60686 1.15776 1.53015 1.00626 1.22390 1.00045 0.95198 0.89264 1.19360 0.92847 0.80190 0.91653 0.96657 1.86408 1.25283 1.29801 1.97124 1.22841 1.37248 1.15635 0.94073 0.93149 1.27228 0.93709 0.95692 1.05281 1.70778 1.32488 1.19099 1.33405 0.82997 0.76596 0.75033 0.71863 1.21298 1.19650 1.19450 1.19718 0.97935 0.96333 0.93365 1.21531 0.94483 0.93819 1.00198 1.21436 1.00198 1.00825 0.91035 1.21177 0.95001 0.93791 0.99523 1.19939 1.06964 1.01397 0.91133 1.18267 0.74340 0.75261 0.86159 1.93217 1.63837 1.67721 1.91464 1.93183 1.96147 1.56112 1.70447 1.93185 1.43005 1.83290 1.96680 1.20761 0.98169 0.99440 0.90528 0.92528 0.90462 0.92588 0.92812 0.90324 0.92380 0.84577 0.91288 0.95310 0.79456 0.92104 0.84739 0.82643 0.82985 0.84043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.05 71.98 0.58 -2.63 16 2 C 0.15 3.70 0.79 2.78 0.00 3.70 16 3 C -0.18 -4.09 8.04 71.98 0.58 -3.51 16 4 N -0.67 -21.08 4.97 -473.89 -2.36 -23.44 16 5 C 0.06 2.27 4.50 86.30 0.39 2.66 16 6 C 0.22 10.58 2.63 29.85 0.08 10.66 16 7 H 0.02 0.84 8.01 -2.39 -0.02 0.82 16 8 O -0.58 -28.83 11.88 -148.98 -1.77 -30.60 16 9 C -0.66 -35.71 8.76 25.60 0.22 -35.49 16 10 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 11 C -0.02 -0.95 5.40 84.66 0.46 -0.49 16 12 N -0.92 -56.34 13.53 21.45 0.29 -56.05 16 13 Si 1.11 48.92 29.90 68.60 2.05 50.98 16 14 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 17 C -0.07 -1.68 4.77 -19.87 -0.09 -1.77 16 18 C -0.08 -1.87 9.14 22.27 0.20 -1.66 16 19 C -0.12 -2.14 10.05 22.27 0.22 -1.91 16 20 C -0.08 -1.34 9.40 22.27 0.21 -1.13 16 21 C -0.19 -3.76 5.45 -19.87 -0.11 -3.87 16 22 C 0.51 9.80 3.36 71.23 0.24 10.04 16 23 F -0.18 -3.62 17.30 44.97 0.78 -2.85 16 24 F -0.18 -3.34 16.46 44.97 0.74 -2.60 16 25 F -0.18 -3.58 16.46 44.97 0.74 -2.84 16 26 C -0.07 -1.45 8.07 22.27 0.18 -1.27 16 27 H 0.06 1.46 6.40 -2.39 -0.02 1.44 16 28 H 0.08 1.50 7.39 -2.38 -0.02 1.48 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.50 7.39 -2.39 -0.02 1.49 16 32 H 0.06 1.48 6.40 -2.39 -0.02 1.47 16 33 H 0.34 10.64 7.54 -89.69 -0.68 9.97 16 34 H 0.07 2.60 6.30 -2.39 -0.02 2.58 16 35 H 0.03 1.09 6.30 -2.39 -0.02 1.07 16 36 H 0.36 16.31 9.04 -74.06 -0.67 15.64 16 37 H 0.27 16.88 6.47 -92.71 -0.60 16.28 16 38 H 0.13 3.37 6.40 -2.91 -0.02 3.35 16 39 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.15 1.98 7.60 -2.91 -0.02 1.96 16 41 H 0.14 2.54 6.65 -2.91 -0.02 2.52 16 Total: -1.00 -62.90 344.25 3.55 -59.35 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.08 Total: 34.73 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 3.16 Total: -26.69 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -2.07 Total: -79.48 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -1.77 Total: -30.60 kcal Atomic # 9 Polarization: -10.54 SS G_CDS: 2.26 Total: -8.28 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.05 Total: 50.98 kcal Total: -62.90 3.55 -59.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929501092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.714 kcal (2) G-P(sol) polarization free energy of solvation -62.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds