Wall clock time and date at job start Tue Mar 31 2020 11:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47679 * 2 1 4 4 N 1.46902 * 109.47038 * 120.00089 * 2 1 3 5 5 C 1.46905 * 110.99871 * 299.99890 * 4 2 1 6 6 C 1.53000 * 109.47123 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47398 * 59.99875 * 6 5 4 8 8 O 1.42903 * 109.46726 * 299.99631 * 6 5 4 9 9 C 1.50699 * 109.47083 * 179.97438 * 6 5 4 10 10 H 1.08000 * 119.99792 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.47256 * 90.00491 * 13 11 9 15 15 H 1.48506 * 109.46930 * 210.00332 * 13 11 9 16 16 H 1.48499 * 109.47104 * 330.00193 * 13 11 9 17 17 C 1.50700 * 109.47160 * 239.99541 * 2 1 3 18 18 C 1.38235 * 120.00081 * 239.72803 * 17 2 1 19 19 C 1.38239 * 119.99803 * 179.74665 * 18 17 2 20 20 C 1.38236 * 119.99914 * 0.54533 * 19 18 17 21 21 C 1.50704 * 119.99996 * 179.72445 * 20 19 18 22 22 F 1.39901 * 109.47206 * 269.98095 * 21 20 19 23 23 F 1.39898 * 109.46965 * 29.98357 * 21 20 19 24 24 F 1.39899 * 109.47117 * 149.98423 * 21 20 19 25 25 C 1.38235 * 119.99975 * 359.70944 * 20 19 18 26 26 C 1.38234 * 119.99793 * 60.00212 * 17 2 1 27 27 H 1.09003 * 109.46872 * 300.00242 * 1 2 3 28 28 H 1.08998 * 109.47177 * 59.99815 * 1 2 3 29 29 H 1.09001 * 109.47266 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47535 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46619 * 300.00004 * 3 2 1 32 32 H 1.09007 * 109.46919 * 59.99488 * 3 2 1 33 33 H 1.00896 * 111.00682 * 63.95050 * 4 2 1 34 34 H 1.08992 * 109.47078 * 59.99994 * 5 4 2 35 35 H 1.09004 * 109.46829 * 299.99640 * 5 4 2 36 36 H 0.96700 * 114.00234 * 300.00043 * 8 6 5 37 37 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 38 38 H 1.07993 * 120.00380 * 359.97438 * 18 17 2 39 39 H 1.08002 * 119.99947 * 180.28001 * 19 18 17 40 40 H 1.08003 * 120.00222 * 179.97438 * 25 20 19 41 41 H 1.08002 * 120.00089 * 0.02562 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5486 -0.0264 2.4211 6 6 2.0781 -0.7742 3.6464 7 1 3.1680 -0.7737 3.6294 8 8 1.6020 -2.1214 3.6246 9 6 1.5954 -0.0905 4.8996 10 1 0.9735 0.7897 4.8291 11 6 1.9478 -0.5886 6.1360 12 7 2.7055 -1.6601 6.2217 13 14 1.3488 0.2586 7.6894 14 1 0.0470 -0.3253 8.1012 15 1 2.3440 0.0641 8.7744 16 1 1.1794 1.7105 7.4276 17 6 2.0323 -0.7105 -1.2304 18 6 2.8317 -1.8311 -1.1035 19 6 3.2881 -2.4859 -2.2322 20 6 2.9545 -2.0134 -3.4877 21 6 3.4572 -2.7236 -4.7182 22 9 4.6895 -2.1815 -5.0988 23 9 3.6131 -4.0857 -4.4395 24 9 2.5359 -2.5629 -5.7586 25 6 2.1595 -0.8897 -3.6146 26 6 1.6984 -0.2383 -2.4859 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7502 -1.6648 1.1910 34 1 0.4588 -0.0265 2.4379 35 1 1.9122 1.0011 2.4379 36 1 0.6381 -2.1982 3.6380 37 1 2.9536 -2.0103 7.0916 38 1 3.0966 -2.1973 -0.1227 39 1 3.9089 -3.3641 -2.1330 40 1 1.8991 -0.5203 -4.5955 41 1 1.0778 0.6401 -2.5851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931693873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:29 Heat of formation + Delta-G solvation = -179.211852 kcal Electronic energy + Delta-G solvation = -26599.334519 eV Core-core repulsion = 22256.953755 eV Total energy + Delta-G solvation = -4342.380764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.31553 -47.83789 -47.77546 -40.10764 -37.58387 -35.51202 -32.25603 -32.06180 -31.32451 -30.06820 -27.75848 -27.21734 -26.15838 -24.41853 -22.74494 -22.38476 -20.62819 -19.30518 -18.66650 -18.59875 -18.49667 -16.94065 -16.53569 -15.44150 -15.04329 -14.74554 -14.62561 -14.59077 -14.57436 -14.32612 -14.25011 -14.08793 -13.96556 -13.94497 -13.80306 -13.51613 -13.41729 -12.86612 -12.63577 -12.50045 -12.28388 -11.91416 -11.80346 -11.40102 -11.19243 -11.02108 -10.98657 -10.86168 -10.76609 -10.51908 -10.10891 -9.17485 -9.10803 -9.03910 -8.61154 -8.24246 -7.88979 -6.03830 -4.22341 0.80894 1.17566 2.51576 3.24809 3.32432 3.34474 3.37211 3.57482 3.87829 4.27299 4.28260 4.43948 4.60004 4.72532 4.78214 5.08253 5.17880 5.21609 5.23515 5.34445 5.54169 5.62845 5.72836 5.78920 5.83373 5.86765 6.00562 6.08806 6.11432 6.16768 6.27922 6.38087 6.39882 6.47222 6.68445 6.86651 7.44109 7.71454 7.76671 7.92504 8.17997 8.81000 9.33466 9.54732 11.00369 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.027101 B = 0.002637 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.936401 B =10615.216824 C =11213.269806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.141 3.859 3 C -0.135 4.135 4 N -0.675 5.675 5 C 0.032 3.968 6 C 0.232 3.768 7 H 0.063 0.937 8 O -0.565 6.565 9 C -0.574 4.574 10 H 0.054 0.946 11 C 0.080 3.920 12 N -0.857 5.857 13 Si 0.889 3.111 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.029 4.029 18 C -0.102 4.102 19 C -0.071 4.071 20 C -0.195 4.195 21 C 0.509 3.491 22 F -0.179 7.179 23 F -0.178 7.178 24 F -0.180 7.180 25 C -0.074 4.074 26 C -0.119 4.119 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.345 0.655 34 H 0.023 0.977 35 H 0.069 0.931 36 H 0.341 0.659 37 H 0.260 0.740 38 H 0.151 0.849 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.007 1.253 -20.886 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.049 3.951 3 C -0.193 4.193 4 N -0.307 5.307 5 C -0.097 4.097 6 C 0.174 3.826 7 H 0.081 0.919 8 O -0.367 6.367 9 C -0.612 4.612 10 H 0.072 0.928 11 C -0.126 4.126 12 N -0.493 5.493 13 Si 0.716 3.284 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.030 4.030 18 C -0.120 4.120 19 C -0.089 4.089 20 C -0.196 4.196 21 C 0.455 3.545 22 F -0.160 7.160 23 F -0.160 7.160 24 F -0.162 7.162 25 C -0.092 4.092 26 C -0.138 4.138 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.165 0.835 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.184 0.816 37 H 0.070 0.930 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.615 1.297 -20.803 20.853 hybrid contribution -1.748 0.261 0.694 1.899 sum -2.363 1.558 -20.109 20.307 Atomic orbital electron populations 1.22558 0.96215 1.02302 1.02555 1.19854 0.92198 0.94416 0.88654 1.21882 1.02189 0.93470 1.01733 1.60764 1.62844 1.06496 1.00621 1.22957 0.96854 0.99428 0.90438 1.19425 0.95682 0.79098 0.88382 0.91899 1.86591 1.23283 1.30045 1.96822 1.21610 1.34415 1.13637 0.91538 0.92750 1.25027 0.94131 0.94427 0.99056 1.70076 1.34013 1.20916 1.24272 0.86683 0.78632 0.80010 0.83087 1.20592 1.21090 1.19860 1.20164 0.94345 0.94147 0.94312 1.21289 0.96503 0.94827 0.99398 1.21003 0.97854 0.99214 0.90796 1.19913 1.06619 1.00660 0.92411 1.18367 0.75338 0.77006 0.83799 1.93220 1.44699 1.85751 1.92349 1.93187 1.95571 1.33594 1.93601 1.93173 1.66460 1.95332 1.61221 1.20810 0.95364 0.93448 0.99616 1.20943 1.01017 1.00527 0.91281 0.91279 0.92396 0.92526 0.91627 0.92679 0.91531 0.83531 0.95847 0.91237 0.81633 0.92972 0.83142 0.84806 0.85088 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 8.04 37.16 0.30 -1.79 16 2 C 0.14 1.80 0.79 -132.76 -0.11 1.69 16 3 C -0.14 -1.66 8.05 37.16 0.30 -1.36 16 4 N -0.67 -10.69 5.09 -101.14 -0.52 -11.21 16 5 C 0.03 0.59 4.54 -3.82 -0.02 0.57 16 6 C 0.23 5.56 3.10 -27.88 -0.09 5.47 16 7 H 0.06 1.72 8.14 -51.93 -0.42 1.29 16 8 O -0.57 -13.63 12.07 -35.23 -0.43 -14.05 16 9 C -0.57 -15.19 8.76 -34.44 -0.30 -15.49 16 10 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 11 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 12 N -0.86 -24.88 12.84 55.43 0.71 -24.17 16 13 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 17 C -0.03 -0.35 4.77 -104.62 -0.50 -0.85 16 18 C -0.10 -1.26 9.14 -39.58 -0.36 -1.62 16 19 C -0.07 -0.80 9.40 -39.58 -0.37 -1.17 16 20 C -0.19 -2.14 5.45 -104.62 -0.57 -2.71 16 21 C 0.51 5.50 3.36 36.01 0.12 5.62 16 22 F -0.18 -2.02 17.30 2.25 0.04 -1.99 16 23 F -0.18 -1.99 16.46 2.25 0.04 -1.96 16 24 F -0.18 -1.92 16.46 2.25 0.04 -1.88 16 25 C -0.07 -0.74 9.40 -39.58 -0.37 -1.12 16 26 C -0.12 -1.22 8.71 -39.58 -0.34 -1.57 16 27 H 0.07 0.88 6.40 -51.93 -0.33 0.55 16 28 H 0.06 0.57 7.39 -51.93 -0.38 0.19 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.55 7.39 -51.93 -0.38 0.16 16 32 H 0.07 0.86 6.40 -51.93 -0.33 0.53 16 33 H 0.34 5.55 6.96 -39.29 -0.27 5.27 16 34 H 0.02 0.43 6.30 -51.93 -0.33 0.10 16 35 H 0.07 1.31 6.30 -51.93 -0.33 0.98 16 36 H 0.34 7.29 9.04 45.56 0.41 7.70 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.15 1.98 6.41 -52.49 -0.34 1.65 16 39 H 0.13 1.34 7.60 -52.49 -0.40 0.94 16 40 H 0.13 1.06 7.61 -52.48 -0.40 0.66 16 41 H 0.13 1.08 7.10 -52.49 -0.37 0.71 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -28.85 345.41 -6.61 -35.46 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.27 Total: 11.10 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.41 Total: -12.22 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.20 Total: -35.38 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.43 Total: -14.05 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.11 Total: -5.82 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.85 -6.61 -35.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931693873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.753 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds