Wall clock time and date at job start Tue Mar 31 2020 11:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47679 * 2 1 4 4 N 1.46902 * 109.47038 * 120.00089 * 2 1 3 5 5 C 1.46905 * 110.99871 * 299.99890 * 4 2 1 6 6 C 1.53000 * 109.47123 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47398 * 59.99875 * 6 5 4 8 8 O 1.42903 * 109.46726 * 299.99631 * 6 5 4 9 9 C 1.50699 * 109.47083 * 179.97438 * 6 5 4 10 10 H 1.08000 * 119.99792 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.47256 * 90.00491 * 13 11 9 15 15 H 1.48506 * 109.46930 * 210.00332 * 13 11 9 16 16 H 1.48499 * 109.47104 * 330.00193 * 13 11 9 17 17 C 1.50700 * 109.47160 * 239.99541 * 2 1 3 18 18 C 1.38235 * 120.00081 * 239.72803 * 17 2 1 19 19 C 1.38239 * 119.99803 * 179.74665 * 18 17 2 20 20 C 1.38236 * 119.99914 * 0.54533 * 19 18 17 21 21 C 1.50704 * 119.99996 * 179.72445 * 20 19 18 22 22 F 1.39901 * 109.47206 * 269.98095 * 21 20 19 23 23 F 1.39898 * 109.46965 * 29.98357 * 21 20 19 24 24 F 1.39899 * 109.47117 * 149.98423 * 21 20 19 25 25 C 1.38235 * 119.99975 * 359.70944 * 20 19 18 26 26 C 1.38234 * 119.99793 * 60.00212 * 17 2 1 27 27 H 1.09003 * 109.46872 * 300.00242 * 1 2 3 28 28 H 1.08998 * 109.47177 * 59.99815 * 1 2 3 29 29 H 1.09001 * 109.47266 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47535 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46619 * 300.00004 * 3 2 1 32 32 H 1.09007 * 109.46919 * 59.99488 * 3 2 1 33 33 H 1.00896 * 111.00682 * 63.95050 * 4 2 1 34 34 H 1.08992 * 109.47078 * 59.99994 * 5 4 2 35 35 H 1.09004 * 109.46829 * 299.99640 * 5 4 2 36 36 H 0.96700 * 114.00234 * 300.00043 * 8 6 5 37 37 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 38 38 H 1.07993 * 120.00380 * 359.97438 * 18 17 2 39 39 H 1.08002 * 119.99947 * 180.28001 * 19 18 17 40 40 H 1.08003 * 120.00222 * 179.97438 * 25 20 19 41 41 H 1.08002 * 120.00089 * 0.02562 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5486 -0.0264 2.4211 6 6 2.0781 -0.7742 3.6464 7 1 3.1680 -0.7737 3.6294 8 8 1.6020 -2.1214 3.6246 9 6 1.5954 -0.0905 4.8996 10 1 0.9735 0.7897 4.8291 11 6 1.9478 -0.5886 6.1360 12 7 2.7055 -1.6601 6.2217 13 14 1.3488 0.2586 7.6894 14 1 0.0470 -0.3253 8.1012 15 1 2.3440 0.0641 8.7744 16 1 1.1794 1.7105 7.4276 17 6 2.0323 -0.7105 -1.2304 18 6 2.8317 -1.8311 -1.1035 19 6 3.2881 -2.4859 -2.2322 20 6 2.9545 -2.0134 -3.4877 21 6 3.4572 -2.7236 -4.7182 22 9 4.6895 -2.1815 -5.0988 23 9 3.6131 -4.0857 -4.4395 24 9 2.5359 -2.5629 -5.7586 25 6 2.1595 -0.8897 -3.6146 26 6 1.6984 -0.2383 -2.4859 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7502 -1.6648 1.1910 34 1 0.4588 -0.0265 2.4379 35 1 1.9122 1.0011 2.4379 36 1 0.6381 -2.1982 3.6380 37 1 2.9536 -2.0103 7.0916 38 1 3.0966 -2.1973 -0.1227 39 1 3.9089 -3.3641 -2.1330 40 1 1.8991 -0.5203 -4.5955 41 1 1.0778 0.6401 -2.5851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931693873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:28 Heat of formation + Delta-G solvation = -197.270471 kcal Electronic energy + Delta-G solvation = -26600.117600 eV Core-core repulsion = 22256.953755 eV Total energy + Delta-G solvation = -4343.163844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.17568 -48.69284 -48.64476 -41.04554 -38.82914 -37.17196 -34.24514 -33.33268 -32.18854 -31.21144 -29.41343 -28.19987 -27.16129 -26.03531 -23.69276 -23.42668 -22.22807 -20.38965 -19.52670 -19.46176 -19.36211 -18.90505 -17.70711 -16.64631 -16.42603 -16.18865 -16.07611 -15.73762 -15.50379 -15.48336 -15.13319 -15.09837 -15.02864 -14.87789 -14.80777 -14.60072 -14.41354 -14.16458 -14.02641 -13.71087 -13.39908 -13.13726 -12.93675 -12.82242 -12.75438 -12.60440 -12.39916 -12.11487 -12.01197 -11.92144 -11.61822 -10.98225 -10.69750 -10.14341 -10.00378 -9.99007 -9.19103 -8.11993 -6.37374 -0.06026 0.33481 1.41050 1.42141 1.52459 1.66045 2.39437 2.50479 2.72427 3.03101 3.13958 3.23598 3.42430 3.61942 3.89637 3.94337 4.12410 4.18756 4.32856 4.39455 4.46694 4.53543 4.61932 4.69219 4.75842 4.78174 4.92764 4.94817 4.99535 5.10139 5.20179 5.27220 5.34063 5.37487 5.54068 5.65219 5.77977 5.82103 6.06004 6.28638 6.55766 6.77294 7.35646 7.57674 8.92421 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.027101 B = 0.002637 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.936401 B =10615.216824 C =11213.269806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.141 3.859 3 C -0.134 4.134 4 N -0.682 5.682 5 C 0.055 3.945 6 C 0.232 3.768 7 H 0.020 0.980 8 O -0.578 6.578 9 C -0.585 4.585 10 H 0.060 0.940 11 C 0.025 3.975 12 N -0.899 5.899 13 Si 0.958 3.042 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.264 1.264 17 C -0.037 4.037 18 C -0.118 4.118 19 C -0.076 4.076 20 C -0.200 4.200 21 C 0.513 3.487 22 F -0.182 7.182 23 F -0.182 7.182 24 F -0.177 7.177 25 C -0.070 4.070 26 C -0.113 4.113 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.342 0.658 34 H 0.032 0.968 35 H 0.068 0.932 36 H 0.353 0.647 37 H 0.260 0.740 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.155 0.845 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 2.693 -22.352 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.050 3.950 3 C -0.192 4.192 4 N -0.314 5.314 5 C -0.074 4.074 6 C 0.175 3.825 7 H 0.038 0.962 8 O -0.381 6.381 9 C -0.623 4.623 10 H 0.078 0.922 11 C -0.177 4.177 12 N -0.536 5.536 13 Si 0.783 3.217 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.189 1.189 17 C -0.038 4.038 18 C -0.136 4.136 19 C -0.094 4.094 20 C -0.202 4.202 21 C 0.459 3.541 22 F -0.164 7.164 23 F -0.163 7.163 24 F -0.159 7.159 25 C -0.088 4.088 26 C -0.131 4.131 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.162 0.838 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.197 0.803 37 H 0.069 0.931 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.173 0.827 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.136 2.750 -22.287 22.557 hybrid contribution -1.252 -0.220 1.060 1.654 sum -3.388 2.531 -21.227 21.645 Atomic orbital electron populations 1.22498 0.94976 1.02291 1.03351 1.19925 0.93125 0.94446 0.87497 1.21892 1.01333 0.93177 1.02752 1.60664 1.63435 1.06419 1.00886 1.22479 0.96900 0.98424 0.89589 1.19234 0.93446 0.79462 0.90399 0.96227 1.86526 1.24388 1.30230 1.96986 1.22043 1.33904 1.13700 0.92674 0.92173 1.25890 0.94259 0.95028 1.02539 1.70221 1.35730 1.22751 1.24947 0.85591 0.78071 0.79241 0.78844 1.19857 1.21163 1.18853 1.20128 0.94790 0.94145 0.94701 1.21196 0.97666 0.95753 0.99013 1.21059 0.98030 0.99484 0.90854 1.20018 1.06908 1.01166 0.92088 1.18312 0.75216 0.76783 0.83802 1.93215 1.44975 1.85780 1.92383 1.93181 1.95589 1.33936 1.93638 1.93178 1.66302 1.95298 1.61084 1.21117 0.94274 0.92638 1.00741 1.21175 1.00683 1.01018 0.90225 0.92293 0.89722 0.92955 0.93003 0.89661 0.92494 0.83833 0.95000 0.91395 0.80297 0.93105 0.84870 0.84284 0.82689 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 8.04 71.98 0.58 -3.08 16 2 C 0.14 3.41 0.79 2.78 0.00 3.42 16 3 C -0.13 -3.04 8.05 71.98 0.58 -2.46 16 4 N -0.68 -21.76 5.09 -473.90 -2.41 -24.17 16 5 C 0.06 2.07 4.54 86.30 0.39 2.46 16 6 C 0.23 11.45 3.10 29.85 0.09 11.55 16 7 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 8 O -0.58 -28.57 12.07 -148.98 -1.80 -30.37 16 9 C -0.58 -31.24 8.76 25.60 0.22 -31.01 16 10 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 11 C 0.03 1.39 5.40 84.65 0.46 1.85 16 12 N -0.90 -53.40 12.84 21.45 0.28 -53.12 16 13 Si 0.96 42.65 29.54 68.60 2.03 44.68 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 C -0.04 -0.83 4.77 -19.87 -0.09 -0.92 16 18 C -0.12 -2.90 9.14 22.27 0.20 -2.70 16 19 C -0.08 -1.69 9.40 22.27 0.21 -1.48 16 20 C -0.20 -4.06 5.45 -19.86 -0.11 -4.17 16 21 C 0.51 10.28 3.36 71.24 0.24 10.52 16 22 F -0.18 -3.87 17.30 44.97 0.78 -3.09 16 23 F -0.18 -3.89 16.46 44.97 0.74 -3.15 16 24 F -0.18 -3.39 16.46 44.97 0.74 -2.65 16 25 C -0.07 -1.19 9.40 22.27 0.21 -0.98 16 26 C -0.11 -1.95 8.71 22.27 0.19 -1.75 16 27 H 0.06 1.38 6.40 -2.39 -0.02 1.36 16 28 H 0.08 1.34 7.39 -2.39 -0.02 1.33 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.40 7.39 -2.39 -0.02 1.38 16 32 H 0.06 1.40 6.40 -2.38 -0.02 1.38 16 33 H 0.34 11.25 6.96 -89.70 -0.62 10.62 16 34 H 0.03 1.14 6.30 -2.39 -0.02 1.13 16 35 H 0.07 2.56 6.30 -2.39 -0.02 2.55 16 36 H 0.35 15.30 9.04 -74.06 -0.67 14.63 16 37 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.13 3.69 6.41 -2.91 -0.02 3.67 16 39 H 0.14 2.80 7.60 -2.91 -0.02 2.78 16 40 H 0.16 1.90 7.61 -2.91 -0.02 1.87 16 41 H 0.16 1.85 7.10 -2.91 -0.02 1.83 16 Total: -1.00 -62.55 345.41 3.33 -59.22 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.20 Total: 31.43 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 3.18 Total: -18.77 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -2.14 Total: -77.30 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.80 Total: -30.37 kcal Atomic # 9 Polarization: -11.15 SS G_CDS: 2.26 Total: -8.89 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -62.55 3.33 -59.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931693873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.048 kcal (2) G-P(sol) polarization free energy of solvation -62.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds