Wall clock time and date at job start Tue Mar 31 2020 11:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42900 * 113.38137 * 290.10784 * 3 2 1 5 5 C 1.53513 * 114.16991 * 157.03365 * 3 2 1 6 6 N 1.47484 * 87.92818 * 220.32684 * 5 3 2 7 7 C 1.46902 * 111.00290 * 138.70124 * 6 5 3 8 8 C 1.52996 * 109.47355 * 169.99549 * 7 6 5 9 9 H 1.09002 * 109.47263 * 305.00277 * 8 7 6 10 10 O 1.42903 * 109.46932 * 65.00349 * 8 7 6 11 11 C 1.53002 * 109.47239 * 184.99856 * 8 7 6 12 12 O 1.42892 * 109.47028 * 174.99976 * 11 8 7 13 13 C 1.35675 * 116.99847 * 180.02562 * 12 11 8 14 14 C 1.39312 * 119.82063 * 359.72847 * 13 12 11 15 15 C 1.36431 * 120.18745 * 179.75763 * 14 13 12 16 16 C 1.40831 * 119.81474 * 0.51483 * 15 14 13 17 17 C 1.41209 * 120.18296 * 179.71897 * 16 15 14 18 18 H 1.07999 * 120.00351 * 24.56992 * 17 16 15 19 19 C 1.39894 * 120.00104 * 204.57319 * 17 16 15 20 20 N 1.30886 * 120.00111 * 17.93184 * 19 17 16 21 21 Si 1.86799 * 120.00255 * 197.93275 * 19 17 16 22 22 H 1.48503 * 109.46969 * 59.99512 * 21 19 17 23 23 H 1.48498 * 109.47349 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46943 * 299.99760 * 21 19 17 25 25 C 1.40836 * 119.63671 * 359.74048 * 16 15 14 26 26 C 1.36433 * 119.81619 * 0.02562 * 25 16 15 27 27 C 1.47476 * 87.83895 * 27.00599 * 6 5 3 28 28 H 4.46041 * 5.10379 * 179.97438 * 4 1 2 29 29 H 0.96700 * 114.00140 * 46.92233 * 4 3 2 30 30 H 1.08995 * 113.47783 * 105.56271 * 5 3 2 31 31 H 1.08996 * 113.53157 * 335.09846 * 5 3 2 32 32 H 1.09003 * 109.46723 * 49.99901 * 7 6 5 33 33 H 1.08998 * 109.46913 * 290.00214 * 7 6 5 34 34 H 0.96694 * 114.00109 * 59.99613 * 10 8 7 35 35 H 1.08994 * 109.46880 * 295.00653 * 11 8 7 36 36 H 1.09010 * 109.46522 * 55.00631 * 11 8 7 37 37 H 1.08003 * 119.90354 * 0.02562 * 14 13 12 38 38 H 1.08008 * 120.09593 * 180.25207 * 15 14 13 39 39 H 0.96989 * 120.00124 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.09237 * 179.97438 * 25 16 15 41 41 H 1.07993 * 119.91178 * 179.97438 * 26 25 16 42 42 H 1.09006 * 113.47426 * 87.75457 * 27 6 5 43 43 H 1.08999 * 113.48397 * 218.22380 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2133 -0.4500 1.2317 5 6 3.2740 1.2905 -0.5465 6 7 4.2776 0.4504 -1.2262 7 6 4.5487 0.9468 -2.5820 8 6 5.7606 0.2139 -3.1607 9 1 6.6070 0.3191 -2.4820 10 8 5.4477 -1.1712 -3.3209 11 6 6.1193 0.8162 -4.5207 12 8 7.3189 0.2116 -5.0078 13 6 7.7780 0.6370 -6.2116 14 6 7.0791 1.6172 -6.9127 15 6 7.5368 2.0540 -8.1214 16 6 8.7134 1.5034 -8.6652 17 6 9.1909 1.9455 -9.9184 18 1 8.9291 2.9290 -10.2797 19 6 10.0030 1.1095 -10.6921 20 7 10.0398 -0.1759 -10.4479 21 14 11.0349 1.8275 -12.0738 22 1 11.9788 2.8297 -11.5172 23 1 11.8007 0.7410 -12.7358 24 1 10.1458 2.4827 -13.0665 25 6 9.4111 0.5091 -7.9524 26 6 8.9426 0.0867 -6.7426 27 6 3.2749 -0.6308 -1.2499 28 1 -1.0500 0.0001 0.0001 29 1 2.8159 -1.2626 1.5737 30 1 3.6962 1.9301 0.2285 31 1 2.6249 1.8333 -1.2336 32 1 4.7556 2.0163 -2.5426 33 1 3.6795 0.7680 -3.2149 34 1 4.7024 -1.3402 -3.9133 35 1 5.3078 0.6325 -5.2247 36 1 6.2714 1.8903 -4.4135 37 1 6.1747 2.0355 -6.4961 38 1 6.9959 2.8168 -8.6619 39 1 10.6031 -0.7555 -10.9841 40 1 10.3141 0.0815 -8.3627 41 1 9.4762 -0.6759 -6.1949 42 1 2.6254 -0.6015 -2.1248 43 1 3.6978 -1.6194 -1.0710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934441076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:45 Heat of formation + Delta-G solvation = -13.327446 kcal Electronic energy + Delta-G solvation = -25002.643328 eV Core-core repulsion = 21209.312592 eV Total energy + Delta-G solvation = -3793.330736 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.02440 -38.97694 -37.49595 -36.23530 -35.69561 -33.36228 -33.31423 -31.46005 -29.83191 -29.07828 -28.10209 -26.48874 -25.14975 -24.34030 -22.13095 -21.04166 -20.69634 -20.50478 -19.56513 -17.36252 -17.16985 -16.87921 -16.62716 -16.42556 -15.94306 -15.61504 -15.26458 -14.84302 -14.42444 -14.06015 -13.93757 -13.70129 -13.63035 -13.11331 -12.87786 -12.47316 -12.28643 -12.17431 -12.11580 -11.78826 -11.58926 -11.37987 -11.21317 -11.12699 -11.11384 -10.99416 -10.81403 -10.59129 -10.19767 -10.00210 -9.94592 -9.82760 -9.33152 -9.24555 -9.01524 -7.64266 -7.02981 -6.72041 -4.25386 2.13072 2.16247 2.79176 2.95172 3.08054 3.10359 3.22516 3.25923 3.50289 3.71805 3.95142 4.10341 4.19627 4.41786 4.53074 4.61837 4.72533 4.84064 4.98865 5.11749 5.20516 5.26036 5.33692 5.35306 5.37342 5.52394 5.60614 5.67485 5.85788 6.05350 6.07341 6.23360 6.56310 6.73460 6.97739 6.99484 7.11242 7.12634 7.18683 7.46430 7.55735 7.66141 7.79162 8.00525 8.20671 8.45587 8.65492 8.89931 8.98961 10.22387 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.043321 B = 0.001919 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.175693 B =14585.617679 C =14813.608494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.217 4.217 3 C 0.209 3.791 4 O -0.515 6.515 5 C 0.016 3.984 6 N -0.446 5.446 7 C -0.012 4.012 8 C 0.121 3.879 9 H 0.115 0.885 10 O -0.545 6.545 11 C 0.039 3.961 12 O -0.316 6.316 13 C -0.009 4.009 14 C -0.168 4.168 15 C -0.199 4.199 16 C 0.088 3.912 17 C -0.464 4.464 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.798 5.798 21 Si 0.908 3.092 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.133 4.133 26 C -0.119 4.119 27 C -0.008 4.008 28 H 0.222 0.778 29 H 0.384 0.616 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.366 0.634 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.281 0.719 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.001 -0.071 16.541 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.218 4.218 3 C 0.167 3.833 4 O -0.320 6.320 5 C -0.112 4.112 6 N -0.168 5.168 7 C -0.141 4.141 8 C 0.061 3.939 9 H 0.132 0.868 10 O -0.349 6.349 11 C -0.039 4.039 12 O -0.232 6.232 13 C -0.052 4.052 14 C -0.187 4.187 15 C -0.219 4.219 16 C 0.086 3.914 17 C -0.494 4.494 18 H 0.094 0.906 19 C -0.142 4.142 20 N -0.424 5.424 21 Si 0.732 3.268 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.153 4.153 26 C -0.138 4.138 27 C -0.137 4.137 28 H 0.239 0.761 29 H 0.232 0.768 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.212 0.788 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.144 0.856 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.222 -0.064 17.154 22.283 hybrid contribution -1.613 0.300 -1.667 2.339 sum -15.835 0.236 15.487 22.151 Atomic orbital electron populations 1.25107 0.95915 0.98994 0.98177 1.23393 0.94412 1.01845 1.02164 1.18784 0.80920 0.97523 0.86098 1.86630 1.62115 1.46614 1.36659 1.24035 0.93459 0.95117 0.98614 1.68925 1.28815 1.04768 1.14269 1.23370 0.98856 1.01043 0.90822 1.21832 0.96487 0.81107 0.94472 0.86769 1.86673 1.54943 1.23666 1.69597 1.23111 0.88328 0.97402 0.95039 1.85893 1.39808 1.62826 1.34655 1.18629 0.98447 1.01304 0.86839 1.20383 1.00063 1.00517 0.97759 1.20547 0.98499 1.05615 0.97230 1.17593 0.89844 0.91324 0.92687 1.19420 1.26789 1.01574 1.01613 0.90609 1.25883 0.95627 0.94266 0.98441 1.69825 1.31900 1.03882 1.36843 0.86378 0.80262 0.79562 0.80556 1.18884 1.20380 1.19126 1.20987 1.00908 1.00689 0.92686 1.19850 0.95435 1.01462 0.97008 1.24600 0.93230 0.99386 0.96485 0.76082 0.76781 0.88017 0.89751 0.89239 0.92884 0.78779 0.93138 0.92421 0.89021 0.88798 0.90846 0.85647 0.88395 0.90377 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 19.25 29.55 0.57 -0.47 16 2 C -0.22 -1.74 12.75 -37.12 -0.47 -2.21 16 3 C 0.21 1.81 1.91 -92.88 -0.18 1.63 16 4 O -0.51 -4.68 13.53 -35.23 -0.48 -5.16 16 5 C 0.02 0.14 7.08 -7.54 -0.05 0.09 16 6 N -0.45 -4.59 6.31 -244.62 -1.54 -6.13 16 7 C -0.01 -0.12 4.53 -3.83 -0.02 -0.13 16 8 C 0.12 1.56 3.49 -26.73 -0.09 1.46 16 9 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 10 O -0.55 -7.42 12.64 -40.09 -0.51 -7.93 16 11 C 0.04 0.59 4.36 37.16 0.16 0.75 16 12 O -0.32 -6.57 10.09 -23.58 -0.24 -6.81 16 13 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 14 C -0.17 -3.81 8.96 -39.83 -0.36 -4.17 16 15 C -0.20 -4.91 9.74 -39.25 -0.38 -5.29 16 16 C 0.09 2.36 5.57 -106.81 -0.60 1.77 16 17 C -0.46 -12.36 9.04 -37.83 -0.34 -12.70 16 18 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 19 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 20 N -0.80 -20.80 10.96 55.55 0.61 -20.19 16 21 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 26 C -0.12 -2.93 9.92 -39.83 -0.40 -3.33 16 27 C -0.01 -0.07 6.48 -7.54 -0.05 -0.12 16 28 H 0.22 0.60 7.80 -54.09 -0.42 0.18 16 29 H 0.38 1.94 9.01 45.56 0.41 2.35 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 32 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.05 0.44 7.30 -51.93 -0.38 0.06 16 34 H 0.37 3.73 9.04 45.56 0.41 4.15 16 35 H 0.05 0.73 7.64 -51.93 -0.40 0.33 16 36 H 0.06 0.84 7.66 -51.92 -0.40 0.44 16 37 H 0.09 1.77 6.27 -52.48 -0.33 1.44 16 38 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.13 3.38 6.16 -52.48 -0.32 3.06 16 41 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 42 H 0.08 0.60 7.37 -51.93 -0.38 0.22 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -32.15 368.96 -8.82 -40.97 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -4.30 Total: 11.23 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -2.89 Total: -25.25 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: -0.93 Total: -26.32 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -1.22 Total: -19.90 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.15 -8.82 -40.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934441076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.640 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds