Wall clock time and date at job start Tue Mar 31 2020 11:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42900 * 113.38137 * 290.10784 * 3 2 1 5 5 C 1.53513 * 114.16991 * 157.03365 * 3 2 1 6 6 N 1.47484 * 87.92818 * 220.32684 * 5 3 2 7 7 C 1.46902 * 111.00290 * 138.70124 * 6 5 3 8 8 C 1.52996 * 109.47355 * 169.99549 * 7 6 5 9 9 H 1.09002 * 109.47263 * 305.00277 * 8 7 6 10 10 O 1.42903 * 109.46932 * 65.00349 * 8 7 6 11 11 C 1.53002 * 109.47239 * 184.99856 * 8 7 6 12 12 O 1.42892 * 109.47028 * 174.99976 * 11 8 7 13 13 C 1.35675 * 116.99847 * 180.02562 * 12 11 8 14 14 C 1.39312 * 119.82063 * 359.72847 * 13 12 11 15 15 C 1.36431 * 120.18745 * 179.75763 * 14 13 12 16 16 C 1.40831 * 119.81474 * 0.51483 * 15 14 13 17 17 C 1.41209 * 120.18296 * 179.71897 * 16 15 14 18 18 H 1.07999 * 120.00351 * 24.56992 * 17 16 15 19 19 C 1.39894 * 120.00104 * 204.57319 * 17 16 15 20 20 N 1.30886 * 120.00111 * 17.93184 * 19 17 16 21 21 Si 1.86799 * 120.00255 * 197.93275 * 19 17 16 22 22 H 1.48503 * 109.46969 * 59.99512 * 21 19 17 23 23 H 1.48498 * 109.47349 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46943 * 299.99760 * 21 19 17 25 25 C 1.40836 * 119.63671 * 359.74048 * 16 15 14 26 26 C 1.36433 * 119.81619 * 0.02562 * 25 16 15 27 27 C 1.47476 * 87.83895 * 27.00599 * 6 5 3 28 28 H 4.46041 * 5.10379 * 179.97438 * 4 1 2 29 29 H 0.96700 * 114.00140 * 46.92233 * 4 3 2 30 30 H 1.08995 * 113.47783 * 105.56271 * 5 3 2 31 31 H 1.08996 * 113.53157 * 335.09846 * 5 3 2 32 32 H 1.09003 * 109.46723 * 49.99901 * 7 6 5 33 33 H 1.08998 * 109.46913 * 290.00214 * 7 6 5 34 34 H 0.96694 * 114.00109 * 59.99613 * 10 8 7 35 35 H 1.08994 * 109.46880 * 295.00653 * 11 8 7 36 36 H 1.09010 * 109.46522 * 55.00631 * 11 8 7 37 37 H 1.08003 * 119.90354 * 0.02562 * 14 13 12 38 38 H 1.08008 * 120.09593 * 180.25207 * 15 14 13 39 39 H 0.96989 * 120.00124 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.09237 * 179.97438 * 25 16 15 41 41 H 1.07993 * 119.91178 * 179.97438 * 26 25 16 42 42 H 1.09006 * 113.47426 * 87.75457 * 27 6 5 43 43 H 1.08999 * 113.48397 * 218.22380 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2133 -0.4500 1.2317 5 6 3.2740 1.2905 -0.5465 6 7 4.2776 0.4504 -1.2262 7 6 4.5487 0.9468 -2.5820 8 6 5.7606 0.2139 -3.1607 9 1 6.6070 0.3191 -2.4820 10 8 5.4477 -1.1712 -3.3209 11 6 6.1193 0.8162 -4.5207 12 8 7.3189 0.2116 -5.0078 13 6 7.7780 0.6370 -6.2116 14 6 7.0791 1.6172 -6.9127 15 6 7.5368 2.0540 -8.1214 16 6 8.7134 1.5034 -8.6652 17 6 9.1909 1.9455 -9.9184 18 1 8.9291 2.9290 -10.2797 19 6 10.0030 1.1095 -10.6921 20 7 10.0398 -0.1759 -10.4479 21 14 11.0349 1.8275 -12.0738 22 1 11.9788 2.8297 -11.5172 23 1 11.8007 0.7410 -12.7358 24 1 10.1458 2.4827 -13.0665 25 6 9.4111 0.5091 -7.9524 26 6 8.9426 0.0867 -6.7426 27 6 3.2749 -0.6308 -1.2499 28 1 -1.0500 0.0001 0.0001 29 1 2.8159 -1.2626 1.5737 30 1 3.6962 1.9301 0.2285 31 1 2.6249 1.8333 -1.2336 32 1 4.7556 2.0163 -2.5426 33 1 3.6795 0.7680 -3.2149 34 1 4.7024 -1.3402 -3.9133 35 1 5.3078 0.6325 -5.2247 36 1 6.2714 1.8903 -4.4135 37 1 6.1747 2.0355 -6.4961 38 1 6.9959 2.8168 -8.6619 39 1 10.6031 -0.7555 -10.9841 40 1 10.3141 0.0815 -8.3627 41 1 9.4762 -0.6759 -6.1949 42 1 2.6254 -0.6015 -2.1248 43 1 3.6978 -1.6194 -1.0710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934441076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:44 Heat of formation + Delta-G solvation = -39.220741 kcal Electronic energy + Delta-G solvation = -25003.766145 eV Core-core repulsion = 21209.312592 eV Total energy + Delta-G solvation = -3794.453554 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.70897 -40.58480 -38.79727 -37.66017 -36.56072 -35.18269 -33.89776 -32.47640 -31.59704 -30.92154 -29.16932 -27.13848 -26.75756 -25.54334 -23.37261 -22.51003 -22.21308 -21.60236 -20.18007 -19.25643 -18.69124 -17.71829 -17.49465 -17.41015 -17.04889 -16.65180 -16.51242 -16.09369 -15.74023 -15.54592 -15.31428 -14.77843 -14.55828 -14.39042 -14.07240 -13.92704 -13.90046 -13.49233 -13.20772 -13.09873 -12.78689 -12.76397 -12.64133 -12.40775 -12.24528 -11.94009 -11.79840 -11.72049 -11.65681 -11.58141 -11.22985 -10.98879 -10.87042 -10.73863 -9.94635 -9.56754 -8.92901 -8.59613 -6.22859 0.95115 1.02334 1.39667 1.50724 1.54840 1.62133 1.66002 2.22571 2.33130 2.72458 2.82101 3.02027 3.32119 3.43728 3.62375 3.69885 3.82957 3.87375 3.97574 4.14151 4.20373 4.27057 4.29058 4.36226 4.44921 4.54378 4.59398 4.69219 4.80969 4.86045 4.96349 5.00573 5.06912 5.20984 5.23386 5.28175 5.58513 5.64023 5.87956 5.88244 6.05445 6.25940 6.51803 6.56286 6.66031 6.77628 6.82775 6.94776 7.10223 8.36839 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.043321 B = 0.001919 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.175693 B =14585.617679 C =14813.608494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.257 4.257 3 C 0.210 3.790 4 O -0.535 6.535 5 C 0.017 3.983 6 N -0.472 5.472 7 C -0.002 4.002 8 C 0.130 3.870 9 H 0.093 0.907 10 O -0.563 6.563 11 C 0.031 3.969 12 O -0.332 6.332 13 C 0.000 4.000 14 C -0.164 4.164 15 C -0.207 4.207 16 C 0.054 3.946 17 C -0.499 4.499 18 H 0.077 0.923 19 C 0.032 3.968 20 N -0.831 5.831 21 Si 0.983 3.017 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.259 1.259 25 C -0.153 4.153 26 C -0.135 4.135 27 C -0.005 4.005 28 H 0.254 0.746 29 H 0.397 0.603 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.381 0.619 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.287 0.713 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.155 0.821 16.747 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.258 4.258 3 C 0.168 3.832 4 O -0.343 6.343 5 C -0.111 4.111 6 N -0.193 5.193 7 C -0.131 4.131 8 C 0.070 3.930 9 H 0.111 0.889 10 O -0.370 6.370 11 C -0.046 4.046 12 O -0.248 6.248 13 C -0.044 4.044 14 C -0.183 4.183 15 C -0.227 4.227 16 C 0.052 3.948 17 C -0.529 4.529 18 H 0.095 0.905 19 C -0.182 4.182 20 N -0.458 5.458 21 Si 0.803 3.197 22 H -0.186 1.186 23 H -0.194 1.194 24 H -0.183 1.183 25 C -0.173 4.173 26 C -0.154 4.154 27 C -0.134 4.134 28 H 0.270 0.730 29 H 0.248 0.752 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.148 0.852 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.110 0.890 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.408 0.817 17.385 23.919 hybrid contribution -1.095 -0.040 -1.541 1.891 sum -17.503 0.776 15.844 23.622 Atomic orbital electron populations 1.25912 0.96646 0.97025 0.96217 1.23436 0.94648 1.03676 1.04005 1.18682 0.81642 0.97221 0.85641 1.86579 1.62926 1.47673 1.37141 1.24080 0.93244 0.95148 0.98640 1.68858 1.30079 1.05787 1.14620 1.23257 0.97912 1.01020 0.90932 1.21713 0.97368 0.81169 0.92769 0.88903 1.86638 1.55950 1.24177 1.70200 1.23498 0.86558 0.98172 0.96326 1.85885 1.42191 1.63467 1.33277 1.18696 0.97662 1.00469 0.87566 1.20698 1.01006 0.99727 0.96833 1.20810 0.97977 1.05791 0.98126 1.17963 0.91116 0.92269 0.93491 1.19687 1.28757 1.02106 1.02309 0.90458 1.26762 0.96158 0.94352 1.00899 1.69888 1.32610 1.05131 1.38200 0.85246 0.78377 0.78817 0.77212 1.18591 1.19392 1.18280 1.20900 1.00997 1.01700 0.93678 1.20013 0.96559 1.02010 0.96842 1.24590 0.93029 0.98449 0.97313 0.72982 0.75195 0.88674 0.88043 0.88138 0.90824 0.77067 0.91566 0.91054 0.85160 0.87462 0.90212 0.87294 0.87721 0.89029 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 19.25 74.32 1.43 0.05 16 2 C -0.26 -3.62 12.75 31.13 0.40 -3.22 16 3 C 0.21 3.40 1.91 -12.26 -0.02 3.37 16 4 O -0.54 -9.52 13.53 -148.98 -2.02 -11.54 16 5 C 0.02 0.27 7.08 83.58 0.59 0.87 16 6 N -0.47 -9.05 6.31 -928.24 -5.85 -14.90 16 7 C 0.00 -0.04 4.53 86.30 0.39 0.35 16 8 C 0.13 3.14 3.49 30.59 0.11 3.25 16 9 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 10 O -0.56 -14.63 12.64 -144.34 -1.82 -16.45 16 11 C 0.03 0.87 4.36 71.98 0.31 1.18 16 12 O -0.33 -13.42 10.09 -85.28 -0.86 -14.28 16 13 C 0.00 0.00 6.71 22.79 0.15 0.15 16 14 C -0.16 -7.15 8.96 22.11 0.20 -6.95 16 15 C -0.21 -10.14 9.74 22.48 0.22 -9.92 16 16 C 0.05 2.95 5.57 -21.28 -0.12 2.84 16 17 C -0.50 -27.13 9.04 23.40 0.21 -26.92 16 18 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 19 C 0.03 1.65 5.13 85.23 0.44 2.08 16 20 N -0.83 -44.39 10.96 21.82 0.24 -44.15 16 21 Si 0.98 38.61 29.60 68.60 2.03 40.64 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 25 C -0.15 -8.38 8.64 22.48 0.19 -8.18 16 26 C -0.14 -6.82 9.92 22.11 0.22 -6.60 16 27 C 0.00 -0.08 6.48 83.58 0.54 0.46 16 28 H 0.25 0.40 7.80 -4.42 -0.03 0.37 16 29 H 0.40 3.92 9.01 -74.06 -0.67 3.25 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 1.22 7.86 -2.39 -0.02 1.20 16 32 H 0.10 1.50 8.08 -2.39 -0.02 1.48 16 33 H 0.07 0.97 7.30 -2.39 -0.02 0.95 16 34 H 0.38 7.05 9.04 -74.06 -0.67 6.38 16 35 H 0.07 1.69 7.64 -2.39 -0.02 1.67 16 36 H 0.07 1.85 7.66 -2.38 -0.02 1.83 16 37 H 0.13 4.58 6.27 -2.91 -0.02 4.56 16 38 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 39 H 0.29 13.92 8.30 -92.72 -0.77 13.15 16 40 H 0.11 6.19 6.16 -2.91 -0.02 6.17 16 41 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 42 H 0.09 1.21 7.37 -2.38 -0.02 1.19 16 43 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -70.55 368.96 -3.32 -73.86 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -0.29 Total: 34.01 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 5.26 Total: -47.20 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -5.62 Total: -59.06 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -4.70 Total: -42.27 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -70.55 -3.32 -73.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934441076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.644 kcal (2) G-P(sol) polarization free energy of solvation -70.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds