Wall clock time and date at job start Tue Mar 31 2020 12:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00260 * 2 1 4 4 H 1.08995 * 109.87124 * 358.99759 * 3 2 1 5 5 O 1.43746 * 110.00358 * 237.90631 * 3 2 1 6 6 C 1.44379 * 106.97790 * 267.01959 * 5 3 2 7 7 C 1.55218 * 103.56549 * 320.01394 * 6 5 3 8 8 C 1.54102 * 109.87852 * 120.00404 * 3 2 1 9 9 H 1.09004 * 110.48325 * 358.73488 * 8 3 2 10 10 C 1.50698 * 110.48770 * 236.22335 * 8 3 2 11 11 O 1.21280 * 119.99692 * 1.84007 * 10 8 3 12 12 N 1.34777 * 119.99844 * 181.84405 * 10 8 3 13 13 C 1.46505 * 119.99641 * 179.97438 * 12 10 8 14 14 C 1.50704 * 109.46765 * 179.97438 * 13 12 10 15 15 C 1.38319 * 119.96323 * 270.01983 * 14 13 12 16 16 C 1.38286 * 120.13784 * 180.02562 * 15 14 13 17 17 C 1.38125 * 120.06529 * 359.74848 * 16 15 14 18 18 C 1.38860 * 119.92838 * 0.48341 * 17 16 15 19 19 O 1.35749 * 120.06624 * 179.79361 * 18 17 16 20 20 C 1.34833 * 117.00151 * 5.23519 * 19 18 17 21 21 H 1.07995 * 120.00021 * 354.92756 * 20 19 18 22 22 C 1.38660 * 120.00010 * 174.92297 * 20 19 18 23 23 N 1.31553 * 119.99927 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00099 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46747 * 269.99998 * 24 22 20 26 26 H 1.48497 * 109.47192 * 29.99915 * 24 22 20 27 27 H 1.48493 * 109.47045 * 149.99984 * 24 22 20 28 28 C 1.38075 * 119.96627 * 90.00040 * 14 13 12 29 29 H 1.08005 * 119.99780 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00345 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99955 * 180.02562 * 2 1 3 32 32 H 1.08998 * 110.61395 * 78.44230 * 6 5 3 33 33 H 1.08999 * 110.61562 * 201.28118 * 6 5 3 34 34 H 1.08999 * 110.89290 * 278.74724 * 7 6 5 35 35 H 1.09005 * 111.02090 * 155.07209 * 7 6 5 36 36 H 0.96996 * 119.99961 * 359.97438 * 12 10 8 37 37 H 1.09006 * 109.46663 * 60.00144 * 13 12 10 38 38 H 1.08993 * 109.47014 * 300.00142 * 13 12 10 39 39 H 1.07998 * 119.93779 * 0.03022 * 15 14 13 40 40 H 1.07995 * 119.96753 * 180.02562 * 16 15 14 41 41 H 1.07994 * 120.03473 * 180.25972 * 17 16 15 42 42 H 0.96999 * 120.00146 * 179.97438 * 23 22 20 43 43 H 1.08006 * 120.03104 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3612 2.1384 -0.0179 5 8 2.9309 1.3721 -1.1443 6 6 4.2194 0.8725 -0.7265 7 6 4.3956 1.4654 0.6972 8 6 2.9531 1.3965 1.2550 9 1 2.8267 0.5107 1.8775 10 6 2.6311 2.6418 2.0402 11 8 1.7477 3.3834 1.6655 12 7 3.3249 2.9313 3.1588 13 6 3.0122 4.1422 3.9218 14 6 3.9243 4.2316 5.1182 15 6 3.5478 3.6562 6.3184 16 6 4.3816 3.7364 7.4186 17 6 5.5959 4.3873 7.3206 18 6 5.9745 4.9701 6.1184 19 8 7.1655 5.6142 6.0201 20 6 7.9814 5.5593 7.0921 21 1 7.6434 5.0908 8.0045 22 6 9.2545 6.1044 7.0230 23 7 10.0508 6.0504 8.0688 24 14 9.8389 6.9154 5.4450 25 1 10.4957 5.9015 4.5813 26 1 8.6764 7.4982 4.7280 27 1 10.8092 7.9911 5.7713 28 6 5.1350 4.8873 5.0150 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 4.2149 -0.2168 -0.6889 33 1 5.0041 1.2291 -1.3937 34 1 4.7448 2.4967 0.6483 35 1 5.0730 0.8546 1.2940 36 1 4.0313 2.3380 3.4586 37 1 1.9759 4.1026 4.2575 38 1 3.1559 5.0178 3.2888 39 1 2.6007 3.1431 6.3965 40 1 4.0851 3.2858 8.3542 41 1 6.2486 4.4461 8.1790 42 1 10.9415 6.4314 8.0204 43 1 5.4283 5.3365 4.0776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117780196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:50 Heat of formation + Delta-G solvation = -64.097632 kcal Electronic energy + Delta-G solvation = -25481.540555 eV Core-core repulsion = 21686.008258 eV Total energy + Delta-G solvation = -3795.532297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.76179 -39.43886 -38.67420 -37.01948 -34.72937 -34.00332 -32.72212 -32.47856 -30.79200 -29.47717 -28.83004 -26.21463 -25.21257 -23.62310 -22.59521 -21.88646 -20.79018 -20.33803 -20.12954 -18.04583 -17.71603 -17.11573 -16.78769 -16.20475 -15.84821 -15.51398 -15.31141 -15.03213 -14.79331 -14.16539 -14.05000 -13.91318 -13.79161 -13.49124 -13.34663 -12.86382 -12.63261 -12.47376 -12.28376 -12.21125 -11.98509 -11.77115 -11.60561 -11.52474 -11.25851 -10.99918 -10.89187 -10.85844 -10.25191 -10.06162 -10.00683 -9.69887 -9.51261 -9.15292 -8.97549 -8.39580 -7.54001 -6.50832 -4.18398 1.73537 1.87790 2.09149 2.46574 3.12769 3.16754 3.19923 3.33950 3.72912 4.13195 4.15604 4.29068 4.34671 4.44287 4.59944 4.76022 4.81956 4.84969 4.92215 4.99736 5.08043 5.14063 5.34921 5.38076 5.40284 5.50556 5.57118 5.63423 5.68840 5.74041 5.77847 5.95402 6.09008 6.24267 6.31747 6.35980 6.42320 6.57872 6.61448 6.93562 7.04875 7.14778 7.37478 7.45984 7.68086 7.92614 8.06641 8.83886 9.44459 10.56484 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017340 B = 0.002717 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.388398 B =10301.430003 C =11359.098684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.179 4.179 3 C 0.113 3.887 4 H 0.121 0.879 5 O -0.362 6.362 6 C 0.045 3.955 7 C -0.147 4.147 8 C -0.138 4.138 9 H 0.112 0.888 10 C 0.522 3.478 11 O -0.540 6.540 12 N -0.717 5.717 13 C 0.167 3.833 14 C -0.076 4.076 15 C -0.187 4.187 16 C -0.077 4.077 17 C -0.212 4.212 18 C 0.157 3.843 19 O -0.215 6.215 20 C -0.392 4.392 21 H 0.107 0.893 22 C 0.065 3.935 23 N -0.877 5.877 24 Si 0.905 3.095 25 H -0.273 1.273 26 H -0.259 1.259 27 H -0.281 1.281 28 C -0.171 4.171 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.404 0.596 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.281 0.719 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.115 -12.325 -12.307 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.055 3.945 4 H 0.139 0.861 5 O -0.281 6.281 6 C -0.031 4.031 7 C -0.185 4.185 8 C -0.160 4.160 9 H 0.130 0.870 10 C 0.308 3.692 11 O -0.417 6.417 12 N -0.368 5.368 13 C 0.044 3.956 14 C -0.076 4.076 15 C -0.206 4.206 16 C -0.095 4.095 17 C -0.232 4.232 18 C 0.104 3.896 19 O -0.120 6.120 20 C -0.467 4.467 21 H 0.124 0.876 22 C -0.139 4.139 23 N -0.514 5.514 24 Si 0.731 3.269 25 H -0.198 1.198 26 H -0.183 1.183 27 H -0.207 1.207 28 C -0.191 4.191 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.239 0.761 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.152 0.848 42 H 0.091 0.909 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.476 -11.490 -12.859 21.886 hybrid contribution 0.909 -0.153 0.193 0.942 sum -12.567 -11.644 -12.666 21.306 Atomic orbital electron populations 1.23933 0.95819 1.02296 0.98351 1.23286 0.96479 0.98319 1.01608 1.21888 0.92243 0.96860 0.83534 0.86141 1.88990 1.21354 1.84819 1.32920 1.23616 0.86531 0.98349 0.94646 1.23225 0.94510 1.03633 0.97096 1.22702 0.97157 0.98023 0.98084 0.86981 1.20212 0.81578 0.86765 0.80652 1.90683 1.31747 1.50791 1.68528 1.46099 1.38417 1.26429 1.25846 1.20183 0.97815 0.87215 0.90346 1.19251 0.94421 0.99714 0.94262 1.20548 1.00733 1.06127 0.93213 1.20811 0.93584 0.97468 0.97656 1.21373 0.98578 1.04302 0.98905 1.19056 0.86650 0.90818 0.93057 1.83577 1.24016 1.63360 1.41020 1.20761 0.94738 1.40084 0.91149 0.87578 1.24473 0.94433 0.96508 0.98503 1.69638 1.08675 1.43766 1.29325 0.86182 0.79104 0.79327 0.82314 1.19841 1.18327 1.20692 1.20076 0.94828 1.06560 0.97647 0.88054 0.88073 0.87191 0.91905 0.88494 0.89595 0.88941 0.76114 0.90761 0.90761 0.87301 0.86950 0.84804 0.90928 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 14.32 29.02 0.42 -0.94 16 2 C -0.18 -1.57 8.88 -36.02 -0.32 -1.89 16 3 C 0.11 1.19 3.44 -27.31 -0.09 1.10 16 4 H 0.12 1.53 6.11 -51.93 -0.32 1.21 16 5 O -0.36 -4.16 11.18 -35.23 -0.39 -4.55 16 6 C 0.05 0.37 7.67 38.33 0.29 0.66 16 7 C -0.15 -1.17 6.69 -24.60 -0.16 -1.34 16 8 C -0.14 -1.28 3.05 -90.24 -0.28 -1.55 16 9 H 0.11 0.82 7.69 -51.93 -0.40 0.42 16 10 C 0.52 6.36 7.03 -10.99 -0.08 6.29 16 11 O -0.54 -8.48 15.26 5.56 0.08 -8.40 16 12 N -0.72 -8.23 5.51 -61.47 -0.34 -8.57 16 13 C 0.17 2.20 5.80 -5.19 -0.03 2.17 16 14 C -0.08 -1.15 5.25 -104.65 -0.55 -1.70 16 15 C -0.19 -2.79 9.70 -39.53 -0.38 -3.18 16 16 C -0.08 -1.27 10.04 -39.61 -0.40 -1.66 16 17 C -0.21 -4.25 9.17 -39.39 -0.36 -4.61 16 18 C 0.16 3.37 6.65 -39.11 -0.26 3.11 16 19 O -0.21 -5.40 8.59 0.04 0.00 -5.40 16 20 C -0.39 -10.61 9.95 30.89 0.31 -10.30 16 21 H 0.11 2.93 5.43 -52.49 -0.29 2.64 16 22 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 23 N -0.88 -24.60 13.96 55.48 0.77 -23.82 16 24 Si 0.91 21.01 28.62 -169.99 -4.86 16.15 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C -0.17 -3.11 9.65 -39.40 -0.38 -3.49 16 29 H 0.10 0.85 7.85 -52.48 -0.41 0.44 16 30 H 0.10 0.64 8.06 -52.49 -0.42 0.21 16 31 H 0.11 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.79 7.86 -51.93 -0.41 0.39 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.40 4.03 8.46 -40.82 -0.35 3.68 16 37 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 42 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -30.63 365.44 -7.42 -38.05 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.82 Total: 6.72 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -2.37 Total: -15.68 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.44 Total: -32.39 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.31 Total: -18.35 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.86 Total: 16.15 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.63 -7.42 -38.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117780196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.049 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds