Wall clock time and date at job start Tue Mar 31 2020 12:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00260 * 2 1 4 4 H 1.08995 * 109.87124 * 358.99759 * 3 2 1 5 5 O 1.43746 * 110.00358 * 237.90631 * 3 2 1 6 6 C 1.44379 * 106.97790 * 267.01959 * 5 3 2 7 7 C 1.55218 * 103.56549 * 320.01394 * 6 5 3 8 8 C 1.54102 * 109.87852 * 120.00404 * 3 2 1 9 9 H 1.09004 * 110.48325 * 358.73488 * 8 3 2 10 10 C 1.50698 * 110.48770 * 236.22335 * 8 3 2 11 11 O 1.21280 * 119.99692 * 1.84007 * 10 8 3 12 12 N 1.34777 * 119.99844 * 181.84405 * 10 8 3 13 13 C 1.46505 * 119.99641 * 179.97438 * 12 10 8 14 14 C 1.50704 * 109.46765 * 179.97438 * 13 12 10 15 15 C 1.38319 * 119.96323 * 270.01983 * 14 13 12 16 16 C 1.38286 * 120.13784 * 180.02562 * 15 14 13 17 17 C 1.38125 * 120.06529 * 359.74848 * 16 15 14 18 18 C 1.38860 * 119.92838 * 0.48341 * 17 16 15 19 19 O 1.35749 * 120.06624 * 179.79361 * 18 17 16 20 20 C 1.34833 * 117.00151 * 5.23519 * 19 18 17 21 21 H 1.07995 * 120.00021 * 354.92756 * 20 19 18 22 22 C 1.38660 * 120.00010 * 174.92297 * 20 19 18 23 23 N 1.31553 * 119.99927 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00099 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46747 * 269.99998 * 24 22 20 26 26 H 1.48497 * 109.47192 * 29.99915 * 24 22 20 27 27 H 1.48493 * 109.47045 * 149.99984 * 24 22 20 28 28 C 1.38075 * 119.96627 * 90.00040 * 14 13 12 29 29 H 1.08005 * 119.99780 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00345 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99955 * 180.02562 * 2 1 3 32 32 H 1.08998 * 110.61395 * 78.44230 * 6 5 3 33 33 H 1.08999 * 110.61562 * 201.28118 * 6 5 3 34 34 H 1.08999 * 110.89290 * 278.74724 * 7 6 5 35 35 H 1.09005 * 111.02090 * 155.07209 * 7 6 5 36 36 H 0.96996 * 119.99961 * 359.97438 * 12 10 8 37 37 H 1.09006 * 109.46663 * 60.00144 * 13 12 10 38 38 H 1.08993 * 109.47014 * 300.00142 * 13 12 10 39 39 H 1.07998 * 119.93779 * 0.03022 * 15 14 13 40 40 H 1.07995 * 119.96753 * 180.02562 * 16 15 14 41 41 H 1.07994 * 120.03473 * 180.25972 * 17 16 15 42 42 H 0.96999 * 120.00146 * 179.97438 * 23 22 20 43 43 H 1.08006 * 120.03104 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3612 2.1384 -0.0179 5 8 2.9309 1.3721 -1.1443 6 6 4.2194 0.8725 -0.7265 7 6 4.3956 1.4654 0.6972 8 6 2.9531 1.3965 1.2550 9 1 2.8267 0.5107 1.8775 10 6 2.6311 2.6418 2.0402 11 8 1.7477 3.3834 1.6655 12 7 3.3249 2.9313 3.1588 13 6 3.0122 4.1422 3.9218 14 6 3.9243 4.2316 5.1182 15 6 3.5478 3.6562 6.3184 16 6 4.3816 3.7364 7.4186 17 6 5.5959 4.3873 7.3206 18 6 5.9745 4.9701 6.1184 19 8 7.1655 5.6142 6.0201 20 6 7.9814 5.5593 7.0921 21 1 7.6434 5.0908 8.0045 22 6 9.2545 6.1044 7.0230 23 7 10.0508 6.0504 8.0688 24 14 9.8389 6.9154 5.4450 25 1 10.4957 5.9015 4.5813 26 1 8.6764 7.4982 4.7280 27 1 10.8092 7.9911 5.7713 28 6 5.1350 4.8873 5.0150 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 4.2149 -0.2168 -0.6889 33 1 5.0041 1.2291 -1.3937 34 1 4.7448 2.4967 0.6483 35 1 5.0730 0.8546 1.2940 36 1 4.0313 2.3380 3.4586 37 1 1.9759 4.1026 4.2575 38 1 3.1559 5.0178 3.2888 39 1 2.6007 3.1431 6.3965 40 1 4.0851 3.2858 8.3542 41 1 6.2486 4.4461 8.1790 42 1 10.9415 6.4314 8.0204 43 1 5.4283 5.3365 4.0776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117780196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:49 Heat of formation + Delta-G solvation = -84.033152 kcal Electronic energy + Delta-G solvation = -25482.405024 eV Core-core repulsion = 21686.008258 eV Total energy + Delta-G solvation = -3796.396766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.63912 -40.94116 -39.66550 -38.53620 -35.87076 -34.67308 -34.46329 -33.54038 -32.04177 -30.97528 -29.54218 -27.56409 -26.93552 -24.46357 -23.40286 -23.22897 -22.28120 -21.22440 -20.85748 -19.71873 -19.13074 -18.31712 -17.57159 -17.02132 -16.91687 -16.86215 -16.64333 -16.10292 -15.94201 -15.74114 -15.60928 -14.92917 -14.79889 -14.65622 -14.41564 -14.21020 -14.04987 -13.83682 -13.54705 -13.17496 -13.12676 -12.80027 -12.59877 -12.49460 -12.46637 -12.38918 -12.23544 -11.95342 -11.91104 -11.34043 -11.04601 -10.90929 -10.70085 -10.38614 -10.17615 -9.79928 -9.13523 -8.50802 -6.23611 0.33221 0.63622 1.24150 1.31692 1.34409 1.51169 1.52352 2.14516 2.26849 2.76996 3.01093 3.04951 3.10980 3.42919 3.60327 3.66250 3.74846 4.04628 4.12139 4.18909 4.22782 4.23840 4.26936 4.39247 4.48290 4.52712 4.64106 4.70403 4.77389 4.82311 4.88255 4.91314 5.01301 5.06269 5.17388 5.31922 5.37011 5.61524 5.61623 5.67719 5.74192 5.79373 5.88177 5.89688 6.18004 6.46707 6.83732 7.13305 7.57451 8.60537 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017340 B = 0.002717 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.388398 B =10301.430003 C =11359.098684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.184 4.184 3 C 0.109 3.891 4 H 0.090 0.910 5 O -0.390 6.390 6 C 0.040 3.960 7 C -0.143 4.143 8 C -0.130 4.130 9 H 0.140 0.860 10 C 0.522 3.478 11 O -0.579 6.579 12 N -0.709 5.709 13 C 0.173 3.827 14 C -0.061 4.061 15 C -0.158 4.158 16 C -0.073 4.073 17 C -0.228 4.228 18 C 0.120 3.880 19 O -0.245 6.245 20 C -0.398 4.398 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.922 5.922 24 Si 0.968 3.032 25 H -0.264 1.264 26 H -0.265 1.265 27 H -0.270 1.270 28 C -0.169 4.169 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.414 0.586 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.285 0.715 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.891 -14.557 -13.494 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.203 4.203 3 C 0.051 3.949 4 H 0.108 0.892 5 O -0.310 6.310 6 C -0.035 4.035 7 C -0.181 4.181 8 C -0.151 4.151 9 H 0.158 0.842 10 C 0.309 3.691 11 O -0.459 6.459 12 N -0.360 5.360 13 C 0.049 3.951 14 C -0.061 4.061 15 C -0.177 4.177 16 C -0.091 4.091 17 C -0.248 4.248 18 C 0.071 3.929 19 O -0.152 6.152 20 C -0.474 4.474 21 H 0.101 0.899 22 C -0.187 4.187 23 N -0.562 5.562 24 Si 0.790 3.210 25 H -0.189 1.189 26 H -0.189 1.189 27 H -0.195 1.195 28 C -0.189 4.189 29 H 0.108 0.892 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.251 0.749 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.128 0.872 42 H 0.094 0.906 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.276 -13.756 -14.044 24.897 hybrid contribution 1.103 0.401 0.526 1.286 sum -14.173 -13.356 -13.518 23.706 Atomic orbital electron populations 1.24100 0.95891 1.02837 0.97652 1.23327 0.96628 0.98069 1.02228 1.21824 0.92149 0.96917 0.83963 0.89180 1.88956 1.22850 1.85455 1.33735 1.23837 0.85344 0.99641 0.94719 1.23252 0.94050 1.03272 0.97502 1.22722 0.97602 0.97320 0.97501 0.84181 1.20704 0.80726 0.87206 0.80430 1.90678 1.33532 1.52277 1.69426 1.45967 1.38550 1.25913 1.25577 1.20067 0.97690 0.87852 0.89450 1.19440 0.93241 0.98009 0.95428 1.21031 1.01277 1.03538 0.91876 1.21146 0.91995 0.96291 0.99673 1.21408 1.00035 1.05498 0.97811 1.19567 0.86322 0.92192 0.94821 1.83523 1.25474 1.66031 1.40219 1.20701 0.95484 1.39966 0.91265 0.89851 1.25240 0.94570 0.97363 1.01538 1.69720 1.09361 1.45981 1.31182 0.85255 0.78416 0.78719 0.78585 1.18908 1.18914 1.19458 1.20262 0.95286 1.06533 0.96833 0.89154 0.85961 0.85158 0.89701 0.87767 0.91263 0.86167 0.74906 0.89536 0.91501 0.83291 0.83812 0.87203 0.90582 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 14.32 67.79 0.97 -1.45 16 2 C -0.18 -2.81 8.88 25.65 0.23 -2.59 16 3 C 0.11 2.17 3.44 30.22 0.10 2.28 16 4 H 0.09 2.32 6.11 -2.39 -0.01 2.31 16 5 O -0.39 -8.53 11.18 -148.98 -1.67 -10.19 16 6 C 0.04 0.56 7.67 72.74 0.56 1.12 16 7 C -0.14 -1.90 6.69 31.97 0.21 -1.68 16 8 C -0.13 -2.08 3.05 -10.55 -0.03 -2.11 16 9 H 0.14 1.46 7.69 -2.38 -0.02 1.45 16 10 C 0.52 11.65 7.03 87.66 0.62 12.27 16 11 O -0.58 -17.70 15.26 -3.03 -0.05 -17.75 16 12 N -0.71 -14.14 5.51 -466.78 -2.57 -16.71 16 13 C 0.17 4.02 5.80 85.63 0.50 4.51 16 14 C -0.06 -1.66 5.25 -19.88 -0.10 -1.76 16 15 C -0.16 -4.04 9.70 22.30 0.22 -3.82 16 16 C -0.07 -2.20 10.04 22.25 0.22 -1.98 16 17 C -0.23 -9.20 9.17 22.39 0.21 -8.99 16 18 C 0.12 5.23 6.65 22.58 0.15 5.38 16 19 O -0.24 -12.75 8.59 -22.76 -0.20 -12.95 16 20 C -0.40 -22.63 9.95 67.92 0.68 -21.95 16 21 H 0.08 4.94 5.43 -2.91 -0.02 4.93 16 22 C 0.01 0.65 5.49 84.84 0.47 1.12 16 23 N -0.92 -53.83 13.96 21.61 0.30 -53.53 16 24 Si 0.97 44.39 28.62 68.60 1.96 46.35 16 25 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 26 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C -0.17 -5.96 9.65 22.39 0.22 -5.74 16 29 H 0.09 1.48 7.85 -2.91 -0.02 1.45 16 30 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 31 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.16 7.86 -2.39 -0.02 1.14 16 35 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.41 6.72 8.46 -92.71 -0.78 5.93 16 37 H 0.09 1.89 8.08 -2.38 -0.02 1.87 16 38 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 39 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.11 4.94 5.64 -2.91 -0.02 4.92 16 42 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -70.69 365.44 3.23 -67.46 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.24 Total: 22.72 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 5.20 Total: -25.39 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: -2.27 Total: -70.24 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -1.91 Total: -40.89 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.96 Total: 46.35 kcal Total: -70.69 3.23 -67.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117780196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.576 kcal (2) G-P(sol) polarization free energy of solvation -70.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds