Wall clock time and date at job start Tue Mar 31 2020 12:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 C 1.53002 * 109.47033 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46800 * 180.02562 * 4 3 2 6 6 C 1.37104 * 119.99824 * 264.53910 * 5 4 3 7 7 H 1.08004 * 119.99914 * 146.01252 * 6 5 4 8 8 C 1.38948 * 120.00133 * 326.01258 * 6 5 4 9 9 N 1.31409 * 120.00051 * 337.81548 * 8 6 5 10 10 Si 1.86798 * 119.99736 * 157.80840 * 8 6 5 11 11 H 1.48505 * 109.47040 * 60.00637 * 10 8 6 12 12 H 1.48503 * 109.47190 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47448 * 300.00030 * 10 8 6 14 14 C 1.34776 * 120.00147 * 84.54148 * 5 4 3 15 15 O 1.21293 * 119.99680 * 359.97438 * 14 5 4 16 16 C 1.50700 * 120.00231 * 179.97438 * 14 5 4 17 17 C 1.50691 * 109.47223 * 179.97438 * 16 14 5 18 18 C 1.33960 * 126.90284 * 264.97234 * 17 16 14 19 19 O 1.34514 * 110.15059 * 179.97438 * 18 17 16 20 20 C 1.34812 * 110.88771 * 0.02562 * 19 18 17 21 21 C 1.38899 * 133.43599 * 180.28574 * 20 19 18 22 22 C 1.38308 * 119.77454 * 180.11962 * 21 20 19 23 23 O 1.35926 * 119.72056 * 179.75707 * 22 21 20 24 24 C 1.39214 * 120.56344 * 359.55918 * 22 21 20 25 25 C 1.36658 * 120.36411 * 0.21903 * 24 22 21 26 26 C 1.39433 * 119.78743 * 0.02562 * 25 24 22 27 27 H 1.08997 * 109.46924 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46963 * 300.00126 * 1 2 3 29 29 H 1.09006 * 109.46619 * 60.00084 * 1 2 3 30 30 H 1.08999 * 109.46963 * 239.99874 * 2 1 3 31 31 H 1.08995 * 109.47059 * 120.00498 * 2 1 3 32 32 H 1.08999 * 109.47213 * 60.00027 * 3 2 1 33 33 H 1.09000 * 109.47028 * 300.00249 * 3 2 1 34 34 H 1.09002 * 109.46959 * 60.00619 * 4 3 2 35 35 H 1.08998 * 109.47237 * 299.99795 * 4 3 2 36 36 H 0.96998 * 119.99922 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.46770 * 59.99548 * 16 14 5 38 38 H 1.08998 * 109.47073 * 300.00498 * 16 14 5 39 39 H 1.07994 * 124.92360 * 0.02562 * 18 17 16 40 40 H 1.08000 * 120.11166 * 0.02562 * 21 20 19 41 41 H 0.96703 * 114.00072 * 269.80583 * 23 22 21 42 42 H 1.08001 * 119.81371 * 180.19607 * 24 22 21 43 43 H 1.07994 * 120.10901 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.3939 3.4326 -1.1804 7 1 4.2243 4.4914 -1.3095 8 6 4.9522 2.6876 -2.2119 9 7 5.5558 1.5503 -1.9490 10 14 4.8445 3.3027 -3.9724 11 1 5.5178 4.6222 -4.0778 12 1 5.5116 2.3325 -4.8774 13 1 3.4183 3.4422 -4.3618 14 6 4.1779 3.4957 1.1634 15 8 3.8806 2.9570 2.2087 16 6 4.6807 4.9163 1.1641 17 6 4.7195 5.4347 2.5785 18 6 3.7712 6.1484 3.1998 19 8 4.1547 6.4330 4.4573 20 6 5.3735 5.9181 4.7163 21 6 6.1945 5.9245 5.8366 22 6 7.4243 5.2932 5.7906 23 8 8.2290 5.3044 6.8860 24 6 7.8432 4.6429 4.6331 25 6 7.0450 4.6238 3.5241 26 6 5.8045 5.2598 3.5524 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.9285 -0.8892 35 1 3.9330 0.9287 0.8908 36 1 5.9452 1.0301 -2.6691 37 1 4.0133 5.5382 0.5676 38 1 5.6835 4.9470 0.7378 39 1 2.8343 6.4507 2.7558 40 1 5.8744 6.4221 6.7402 41 1 8.8378 6.0550 6.9191 42 1 8.8045 4.1511 4.6116 43 1 7.3742 4.1184 2.6283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149596913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:35 Heat of formation + Delta-G solvation = -58.939151 kcal Electronic energy + Delta-G solvation = -26291.516720 eV Core-core repulsion = 22496.208112 eV Total energy + Delta-G solvation = -3795.308608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.17563 -38.92055 -38.58230 -35.97196 -35.40807 -33.94986 -33.15932 -31.52747 -30.44458 -29.22806 -28.35492 -26.90730 -24.90563 -23.24247 -22.78046 -22.11927 -20.57913 -19.97302 -19.03665 -18.25636 -17.21961 -16.69922 -16.50897 -16.01618 -15.66539 -15.28242 -14.80744 -14.61138 -14.28753 -14.20096 -14.12576 -13.88326 -13.49189 -13.12668 -12.65646 -12.32117 -12.27029 -12.06341 -11.78041 -11.74998 -11.62466 -11.44200 -11.26302 -11.05277 -10.81784 -10.60265 -10.49784 -10.47544 -10.36313 -10.21735 -9.73404 -9.63093 -9.10224 -8.49674 -8.37855 -7.77345 -7.54735 -6.42562 -4.09424 1.03685 1.48285 2.62026 2.96356 3.07835 3.17441 3.18991 3.75923 3.88817 4.06950 4.27328 4.72333 4.77176 4.92660 4.97619 5.15606 5.22218 5.48742 5.52578 5.56143 5.58540 5.66642 5.75434 5.86585 6.06986 6.16150 6.21982 6.24688 6.29004 6.37993 6.40259 6.43384 6.46475 6.55742 6.58323 6.65253 6.74239 6.82015 6.84592 7.13455 7.32593 7.35119 7.47140 7.60686 7.89157 8.33340 9.03613 9.50466 9.93972 10.58397 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.003709 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.941655 B = 7547.874717 C = 8465.399166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.116 3.884 5 N -0.438 5.438 6 C -0.343 4.343 7 H 0.090 0.910 8 C 0.045 3.955 9 N -0.856 5.856 10 Si 0.911 3.089 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.469 3.531 15 O -0.597 6.597 16 C -0.056 4.056 17 C -0.127 4.127 18 C -0.004 4.004 19 O -0.196 6.196 20 C 0.065 3.935 21 C -0.140 4.140 22 C 0.122 3.878 23 O -0.495 6.495 24 C -0.163 4.163 25 C -0.042 4.042 26 C -0.115 4.115 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.270 0.730 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.205 0.795 40 H 0.133 0.867 41 H 0.388 0.612 42 H 0.132 0.868 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 7.004 6.268 9.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.008 4.008 5 N -0.156 5.156 6 C -0.471 4.471 7 H 0.107 0.893 8 C -0.161 4.161 9 N -0.492 5.492 10 Si 0.738 3.262 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.257 3.743 15 O -0.483 6.483 16 C -0.095 4.095 17 C -0.128 4.128 18 C -0.068 4.068 19 O -0.098 6.098 20 C 0.017 3.983 21 C -0.159 4.159 22 C 0.078 3.922 23 O -0.304 6.304 24 C -0.182 4.182 25 C -0.060 4.060 26 C -0.116 4.116 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.222 0.778 40 H 0.151 0.849 41 H 0.244 0.756 42 H 0.150 0.850 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.092 6.186 6.987 9.332 hybrid contribution 0.218 0.533 -1.296 1.418 sum 0.310 6.719 5.691 8.811 Atomic orbital electron populations 1.21757 0.96668 1.00667 1.01444 1.21426 0.94949 0.97800 1.01571 1.21903 0.98019 0.95464 1.01245 1.21413 0.90997 0.84896 1.03470 1.43465 1.55316 1.11995 1.04852 1.19390 1.41611 0.95382 0.90729 0.89251 1.25302 0.94156 0.96319 1.00332 1.69936 1.31080 1.14900 1.33274 0.86253 0.78763 0.78794 0.82419 1.19693 1.20906 1.19812 1.20215 0.81910 0.88341 0.83799 1.90557 1.55403 1.70559 1.31767 1.19827 1.03938 0.95526 0.90258 1.20813 0.93643 1.01345 0.97032 1.23608 0.99800 1.01870 0.81561 1.83968 1.30013 1.64974 1.30796 1.19233 0.85467 0.98082 0.95528 1.19892 0.94238 1.05251 0.96532 1.17876 0.90093 0.97889 0.86363 1.84845 1.52944 1.51066 1.41583 1.20946 1.01575 1.03420 0.92264 1.20233 0.91558 0.95711 0.98516 1.19836 0.96247 1.01637 0.93887 0.93432 0.93095 0.93066 0.92288 0.92433 0.92891 0.92440 0.87595 0.93192 0.91931 0.89158 0.88401 0.77832 0.84903 0.75614 0.84989 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.13 -2.59 5.50 -26.73 -0.15 -2.74 16 4 C 0.12 2.73 4.90 -4.04 -0.02 2.71 16 5 N -0.44 -10.67 2.56 -114.81 -0.29 -10.97 16 6 C -0.34 -8.27 8.70 -14.93 -0.13 -8.40 16 7 H 0.09 2.02 6.97 -52.48 -0.37 1.65 16 8 C 0.05 1.09 4.92 -17.47 -0.09 1.01 16 9 N -0.86 -21.82 11.34 55.50 0.63 -21.19 16 10 Si 0.91 18.62 29.61 -169.99 -5.03 13.59 16 11 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 14 C 0.47 11.11 7.59 -10.99 -0.08 11.02 16 15 O -0.60 -15.75 15.70 5.55 0.09 -15.66 16 16 C -0.06 -1.07 4.91 -29.04 -0.14 -1.22 16 17 C -0.13 -2.32 4.85 -102.65 -0.50 -2.82 16 18 C 0.00 -0.07 11.89 29.23 0.35 0.28 16 19 O -0.20 -3.28 10.58 3.72 0.04 -3.24 16 20 C 0.06 1.10 7.41 -38.49 -0.29 0.81 16 21 C -0.14 -2.04 10.00 -39.31 -0.39 -2.43 16 22 C 0.12 1.69 6.69 -39.19 -0.26 1.42 16 23 O -0.49 -5.59 13.49 -19.51 -0.26 -5.85 16 24 C -0.16 -2.35 9.91 -39.79 -0.39 -2.75 16 25 C -0.04 -0.70 10.04 -39.71 -0.40 -1.10 16 26 C -0.12 -2.10 6.38 -105.12 -0.67 -2.77 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.11 2.64 5.35 -51.93 -0.28 2.36 16 35 H 0.05 1.25 7.59 -51.93 -0.39 0.85 16 36 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 37 H 0.09 1.54 7.64 -51.93 -0.40 1.15 16 38 H 0.10 1.88 8.10 -51.93 -0.42 1.46 16 39 H 0.21 2.50 8.06 -52.49 -0.42 2.08 16 40 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.39 2.27 9.06 45.56 0.41 2.68 16 42 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -30.96 366.39 -7.49 -38.45 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.23 Total: 10.25 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.95 Total: -10.91 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.34 Total: -32.16 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.14 Total: -24.75 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.96 -7.49 -38.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149596913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.485 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds