Wall clock time and date at job start Tue Mar 31 2020 12:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 C 1.53002 * 109.47033 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46800 * 180.02562 * 4 3 2 6 6 C 1.37104 * 119.99824 * 264.53910 * 5 4 3 7 7 H 1.08004 * 119.99914 * 146.01252 * 6 5 4 8 8 C 1.38948 * 120.00133 * 326.01258 * 6 5 4 9 9 N 1.31409 * 120.00051 * 337.81548 * 8 6 5 10 10 Si 1.86798 * 119.99736 * 157.80840 * 8 6 5 11 11 H 1.48505 * 109.47040 * 60.00637 * 10 8 6 12 12 H 1.48503 * 109.47190 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47448 * 300.00030 * 10 8 6 14 14 C 1.34776 * 120.00147 * 84.54148 * 5 4 3 15 15 O 1.21293 * 119.99680 * 359.97438 * 14 5 4 16 16 C 1.50700 * 120.00231 * 179.97438 * 14 5 4 17 17 C 1.50691 * 109.47223 * 179.97438 * 16 14 5 18 18 C 1.33960 * 126.90284 * 264.97234 * 17 16 14 19 19 O 1.34514 * 110.15059 * 179.97438 * 18 17 16 20 20 C 1.34812 * 110.88771 * 0.02562 * 19 18 17 21 21 C 1.38899 * 133.43599 * 180.28574 * 20 19 18 22 22 C 1.38308 * 119.77454 * 180.11962 * 21 20 19 23 23 O 1.35926 * 119.72056 * 179.75707 * 22 21 20 24 24 C 1.39214 * 120.56344 * 359.55918 * 22 21 20 25 25 C 1.36658 * 120.36411 * 0.21903 * 24 22 21 26 26 C 1.39433 * 119.78743 * 0.02562 * 25 24 22 27 27 H 1.08997 * 109.46924 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46963 * 300.00126 * 1 2 3 29 29 H 1.09006 * 109.46619 * 60.00084 * 1 2 3 30 30 H 1.08999 * 109.46963 * 239.99874 * 2 1 3 31 31 H 1.08995 * 109.47059 * 120.00498 * 2 1 3 32 32 H 1.08999 * 109.47213 * 60.00027 * 3 2 1 33 33 H 1.09000 * 109.47028 * 300.00249 * 3 2 1 34 34 H 1.09002 * 109.46959 * 60.00619 * 4 3 2 35 35 H 1.08998 * 109.47237 * 299.99795 * 4 3 2 36 36 H 0.96998 * 119.99922 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.46770 * 59.99548 * 16 14 5 38 38 H 1.08998 * 109.47073 * 300.00498 * 16 14 5 39 39 H 1.07994 * 124.92360 * 0.02562 * 18 17 16 40 40 H 1.08000 * 120.11166 * 0.02562 * 21 20 19 41 41 H 0.96703 * 114.00072 * 269.80583 * 23 22 21 42 42 H 1.08001 * 119.81371 * 180.19607 * 24 22 21 43 43 H 1.07994 * 120.10901 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.3939 3.4326 -1.1804 7 1 4.2243 4.4914 -1.3095 8 6 4.9522 2.6876 -2.2119 9 7 5.5558 1.5503 -1.9490 10 14 4.8445 3.3027 -3.9724 11 1 5.5178 4.6222 -4.0778 12 1 5.5116 2.3325 -4.8774 13 1 3.4183 3.4422 -4.3618 14 6 4.1779 3.4957 1.1634 15 8 3.8806 2.9570 2.2087 16 6 4.6807 4.9163 1.1641 17 6 4.7195 5.4347 2.5785 18 6 3.7712 6.1484 3.1998 19 8 4.1547 6.4330 4.4573 20 6 5.3735 5.9181 4.7163 21 6 6.1945 5.9245 5.8366 22 6 7.4243 5.2932 5.7906 23 8 8.2290 5.3044 6.8860 24 6 7.8432 4.6429 4.6331 25 6 7.0450 4.6238 3.5241 26 6 5.8045 5.2598 3.5524 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.9285 -0.8892 35 1 3.9330 0.9287 0.8908 36 1 5.9452 1.0301 -2.6691 37 1 4.0133 5.5382 0.5676 38 1 5.6835 4.9470 0.7378 39 1 2.8343 6.4507 2.7558 40 1 5.8744 6.4221 6.7402 41 1 8.8378 6.0550 6.9191 42 1 8.8045 4.1511 4.6116 43 1 7.3742 4.1184 2.6283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149596913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:35 Heat of formation + Delta-G solvation = -77.201617 kcal Electronic energy + Delta-G solvation = -26292.308640 eV Core-core repulsion = 22496.208112 eV Total energy + Delta-G solvation = -3796.100528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.42756 -40.43879 -39.97790 -37.24711 -36.98902 -35.57260 -34.54643 -33.39570 -31.65023 -30.68313 -29.68019 -28.36207 -26.74463 -24.51219 -24.29676 -23.28060 -22.06326 -21.46995 -20.77057 -19.36497 -18.72250 -18.05934 -17.89453 -17.63189 -17.04969 -16.61961 -16.35989 -16.13698 -15.87691 -15.80608 -15.42055 -15.11408 -14.78190 -14.45495 -14.39276 -13.83191 -13.76336 -13.44984 -13.27480 -13.07367 -12.96548 -12.93656 -12.82968 -12.60836 -12.29773 -12.15438 -12.04402 -11.95226 -11.79876 -11.57108 -11.43432 -11.01996 -10.88082 -10.28992 -9.64178 -9.46635 -9.01358 -8.28024 -6.01227 -0.14245 0.27373 1.32681 1.45367 1.51946 1.59551 1.76680 2.06510 2.34439 2.56065 3.01920 3.16432 3.26927 3.52288 3.68951 3.95381 4.04015 4.06571 4.14945 4.28176 4.30327 4.38505 4.45412 4.50205 4.66409 4.67089 4.75009 4.83847 4.88254 4.97294 4.99916 5.07204 5.14480 5.17638 5.24456 5.34049 5.35472 5.40663 5.44100 5.49703 5.55211 5.59036 6.03104 6.11331 6.45208 6.82415 7.15594 7.63530 8.07452 8.74165 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.003709 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.941655 B = 7547.874717 C = 8465.399166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.114 4.114 4 C 0.117 3.883 5 N -0.450 5.450 6 C -0.357 4.357 7 H 0.105 0.895 8 C 0.005 3.995 9 N -0.891 5.891 10 Si 0.980 3.020 11 H -0.261 1.261 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.457 3.543 15 O -0.631 6.631 16 C -0.040 4.040 17 C -0.164 4.164 18 C 0.012 3.988 19 O -0.197 6.197 20 C 0.046 3.954 21 C -0.140 4.140 22 C 0.135 3.865 23 O -0.495 6.495 24 C -0.158 4.158 25 C -0.067 4.067 26 C -0.145 4.145 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.022 0.978 36 H 0.271 0.729 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.241 0.759 40 H 0.158 0.842 41 H 0.416 0.584 42 H 0.154 0.846 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 8.292 6.370 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.152 4.152 4 C -0.007 4.007 5 N -0.167 5.167 6 C -0.484 4.484 7 H 0.122 0.878 8 C -0.198 4.198 9 N -0.529 5.529 10 Si 0.804 3.196 11 H -0.186 1.186 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.247 3.753 15 O -0.519 6.519 16 C -0.080 4.080 17 C -0.166 4.166 18 C -0.052 4.052 19 O -0.099 6.099 20 C -0.001 4.001 21 C -0.159 4.159 22 C 0.090 3.910 23 O -0.309 6.309 24 C -0.176 4.176 25 C -0.086 4.086 26 C -0.145 4.145 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.110 0.890 39 H 0.257 0.743 40 H 0.175 0.825 41 H 0.276 0.724 42 H 0.172 0.828 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.371 7.505 7.095 10.334 hybrid contribution 0.483 0.107 -1.197 1.295 sum 0.113 7.611 5.898 9.630 Atomic orbital electron populations 1.21707 0.94042 1.02349 1.01814 1.21413 0.97211 0.95300 1.01549 1.21756 0.95442 0.97675 1.00350 1.21355 0.93198 0.84804 1.01300 1.43745 1.55373 1.12140 1.05471 1.19799 1.41686 0.96232 0.90693 0.87770 1.26146 0.93402 0.96334 1.03964 1.70050 1.32110 1.16292 1.34417 0.85192 0.78807 0.78414 0.77226 1.18552 1.21267 1.19247 1.20980 0.81226 0.90021 0.83033 1.90515 1.56817 1.71769 1.32828 1.19651 1.03659 0.92916 0.91773 1.20859 0.95188 1.03603 0.96961 1.24236 1.00067 0.99935 0.80990 1.83968 1.30030 1.64949 1.30944 1.19558 0.85827 0.98684 0.96023 1.20222 0.94026 1.04978 0.96632 1.17853 0.90141 0.96577 0.86463 1.84788 1.53183 1.52759 1.40133 1.21206 1.01935 1.02716 0.91735 1.20294 0.92105 0.96898 0.99272 1.20119 0.96945 1.02777 0.94709 0.91116 0.93037 0.92395 0.92005 0.92816 0.94295 0.92492 0.88905 0.95939 0.91900 0.86903 0.88996 0.74345 0.82472 0.72428 0.82805 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.91 71.98 0.71 -3.10 16 2 C -0.12 -3.95 5.93 30.59 0.18 -3.77 16 3 C -0.11 -4.71 5.50 30.59 0.17 -4.54 16 4 C 0.12 5.77 4.90 86.38 0.42 6.19 16 5 N -0.45 -22.55 2.56 -635.53 -1.63 -24.17 16 6 C -0.36 -17.29 8.70 84.04 0.73 -16.56 16 7 H 0.10 4.63 6.97 -2.91 -0.02 4.61 16 8 C 0.00 0.23 4.92 84.93 0.42 0.64 16 9 N -0.89 -46.46 11.34 21.66 0.25 -46.21 16 10 Si 0.98 37.78 29.61 68.60 2.03 39.81 16 11 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 12 H -0.29 -11.14 7.11 99.48 0.71 -10.44 16 13 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 14 C 0.46 22.37 7.59 87.66 0.67 23.03 16 15 O -0.63 -34.65 15.70 -3.07 -0.05 -34.69 16 16 C -0.04 -1.59 4.91 29.10 0.14 -1.45 16 17 C -0.16 -6.11 4.85 -18.59 -0.09 -6.20 16 18 C 0.01 0.37 11.89 66.85 0.79 1.16 16 19 O -0.20 -6.44 10.58 -9.60 -0.10 -6.54 16 20 C 0.05 1.56 7.41 22.98 0.17 1.73 16 21 C -0.14 -3.85 10.00 22.45 0.22 -3.62 16 22 C 0.13 3.46 6.69 22.52 0.15 3.61 16 23 O -0.49 -9.68 13.49 -92.72 -1.25 -10.93 16 24 C -0.16 -4.42 9.91 22.13 0.22 -4.20 16 25 C -0.07 -2.33 10.04 22.19 0.22 -2.10 16 26 C -0.14 -5.37 6.38 -20.19 -0.13 -5.50 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 34 H 0.09 4.82 5.35 -2.39 -0.01 4.80 16 35 H 0.02 1.19 7.59 -2.39 -0.02 1.17 16 36 H 0.27 13.38 8.31 -92.71 -0.77 12.60 16 37 H 0.11 3.80 7.64 -2.39 -0.02 3.78 16 38 H 0.09 3.66 8.10 -2.39 -0.02 3.64 16 39 H 0.24 5.38 8.06 -2.91 -0.02 5.36 16 40 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.42 3.37 9.06 -74.06 -0.67 2.70 16 42 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 43 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -68.62 366.39 4.62 -64.00 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.36 Total: 33.42 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 5.01 Total: -14.67 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -1.38 Total: -70.39 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -1.40 Total: -52.17 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -68.62 4.62 -64.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149596913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.201 kcal (2) G-P(sol) polarization free energy of solvation -68.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds