Wall clock time and date at job start Tue Mar 31 2020 13:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42893 * 109.47415 * 2 1 4 4 C 1.35968 * 117.00286 * 180.02562 * 3 2 1 5 5 C 1.38265 * 120.11612 * 359.97438 * 4 3 2 6 6 C 1.38777 * 120.67453 * 180.02562 * 5 4 3 7 7 C 1.36629 * 120.49230 * 0.02562 * 6 5 4 8 8 C 1.39768 * 119.81696 * 359.96339 * 7 6 5 9 9 C 1.46255 * 134.15590 * 180.02562 * 8 7 6 10 10 C 1.35807 * 106.09268 * 180.02562 * 9 8 7 11 11 C 1.46991 * 125.13997 * 180.02562 * 10 9 8 12 12 O 1.21654 * 120.00390 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99885 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00090 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47140 * 34.99611 * 14 13 11 16 16 C 1.50701 * 109.47419 * 155.00130 * 14 13 11 17 17 H 1.07998 * 119.99913 * 359.97438 * 16 14 13 18 18 C 1.37876 * 120.00322 * 179.97438 * 16 14 13 19 19 N 1.31521 * 119.99853 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00422 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46950 * 59.99502 * 20 18 16 22 22 H 1.48490 * 109.47393 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46997 * 300.00331 * 20 18 16 24 24 C 1.53008 * 109.46862 * 274.99537 * 14 13 11 25 25 C 1.53003 * 109.46423 * 65.00011 * 24 14 13 26 26 O 1.34926 * 109.71776 * 0.02562 * 10 9 8 27 27 C 1.34767 * 110.84487 * 0.02562 * 26 10 9 28 28 H 1.08996 * 109.46928 * 59.99882 * 1 2 3 29 29 H 1.08999 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46699 * 300.00221 * 1 2 3 31 31 H 1.09000 * 109.46854 * 239.99505 * 2 1 3 32 32 H 1.09001 * 109.47167 * 120.00494 * 2 1 3 33 33 H 1.07994 * 119.66176 * 359.74751 * 5 4 3 34 34 H 1.07999 * 119.75055 * 179.97438 * 6 5 4 35 35 H 1.08004 * 120.08790 * 180.02562 * 7 6 5 36 36 H 1.08006 * 126.95446 * 0.06710 * 9 8 7 37 37 H 0.97005 * 120.00312 * 359.97438 * 13 11 10 38 38 H 0.96998 * 119.99675 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.46850 * 184.99497 * 24 14 13 40 40 H 1.08990 * 109.47225 * 305.00467 * 24 14 13 41 41 H 1.09007 * 109.46872 * 179.97438 * 25 24 14 42 42 H 1.08993 * 109.47627 * 299.99488 * 25 24 14 43 43 H 1.09004 * 109.46946 * 60.00234 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3543 1.5253 -0.0005 5 6 4.1988 0.4305 -0.0005 6 6 5.5763 0.5989 -0.0005 7 6 6.1216 1.8517 0.0000 8 6 5.2871 2.9729 -0.0003 9 6 5.5205 4.4167 -0.0004 10 6 4.2924 4.9966 -0.0001 11 6 4.0406 6.4448 -0.0006 12 8 4.9743 7.2246 -0.0018 13 7 2.7752 6.9087 -0.0007 14 6 2.5242 8.3520 -0.0018 15 1 3.2912 8.8538 -0.5917 16 6 1.1693 8.6259 -0.6022 17 1 0.5567 7.8068 -0.9487 18 6 0.7119 9.9221 -0.7091 19 7 1.4577 10.9196 -0.2866 20 14 -0.9672 10.2617 -1.4539 21 1 -2.0124 9.5774 -0.6511 22 1 -1.2222 11.7245 -1.4538 23 1 -1.0021 9.7527 -2.8486 24 6 2.5608 8.8771 1.4349 25 6 3.9722 8.7120 2.0022 26 8 3.3385 4.0424 0.0008 27 6 3.8901 2.8128 0.0016 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.7822 -0.5658 0.0041 34 1 6.2221 -0.2667 -0.0001 35 1 7.1946 1.9752 -0.0005 36 1 6.4761 4.9200 -0.0013 37 1 2.0306 6.2869 -0.0008 38 1 1.1357 11.8315 -0.3615 39 1 2.2870 9.9320 1.4432 40 1 1.8556 8.3137 2.0457 41 1 3.9985 9.0865 3.0256 42 1 4.2461 7.6571 1.9939 43 1 4.6775 9.2754 1.3913 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150530996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:07 Heat of formation + Delta-G solvation = -51.510882 kcal Electronic energy + Delta-G solvation = -26113.380154 eV Core-core repulsion = 22318.393660 eV Total energy + Delta-G solvation = -3794.986494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46942 -39.80550 -38.88012 -37.13939 -35.21441 -32.68368 -32.47557 -31.83232 -31.10459 -29.76186 -29.21968 -27.09534 -24.66677 -23.59709 -22.91466 -22.40340 -21.37429 -20.39319 -19.49667 -18.53022 -17.74136 -17.46156 -16.66958 -16.16585 -15.94812 -15.56216 -15.36540 -15.17554 -14.44912 -14.42330 -13.80630 -13.54226 -13.35097 -13.18691 -12.97331 -12.86024 -12.67392 -12.33849 -12.15158 -12.02909 -11.57636 -11.56013 -11.43191 -11.26241 -11.12207 -11.02151 -10.83749 -10.37524 -10.22924 -9.84201 -9.70021 -9.46450 -9.09800 -8.68204 -8.52756 -8.04116 -7.88553 -6.13935 -4.23503 0.61252 1.19997 1.95286 2.53505 2.88445 3.26624 3.31472 3.33192 3.50915 3.69885 3.80877 4.33682 4.51815 4.60732 4.61600 4.69550 4.77038 4.88906 4.96351 5.10819 5.17308 5.17733 5.38778 5.45805 5.50564 5.56895 5.77240 5.92893 6.01166 6.20275 6.28875 6.36879 6.41815 6.43204 6.61723 6.76110 7.01416 7.13493 7.21980 7.26989 7.33940 7.58493 7.69190 7.85036 8.13016 8.51787 8.68412 8.92936 9.43101 10.91479 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013670 B = 0.003463 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.776580 B = 8082.904317 C = 9696.418131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 O -0.309 6.309 4 C 0.148 3.852 5 C -0.193 4.193 6 C -0.099 4.099 7 C -0.103 4.103 8 C -0.098 4.098 9 C -0.143 4.143 10 C 0.007 3.993 11 C 0.579 3.421 12 O -0.520 6.520 13 N -0.687 5.687 14 C 0.268 3.732 15 H 0.054 0.946 16 C -0.537 4.537 17 H 0.062 0.938 18 C 0.068 3.932 19 N -0.882 5.882 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.276 1.276 24 C -0.129 4.129 25 C -0.140 4.140 26 O -0.171 6.171 27 C 0.037 3.963 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.171 0.829 37 H 0.396 0.604 38 H 0.266 0.734 39 H 0.102 0.898 40 H 0.033 0.967 41 H 0.025 0.975 42 H 0.037 0.963 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 -22.740 1.587 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.223 6.223 4 C 0.102 3.898 5 C -0.212 4.212 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.099 4.099 9 C -0.164 4.164 10 C -0.045 4.045 11 C 0.362 3.638 12 O -0.400 6.400 13 N -0.333 5.333 14 C 0.167 3.833 15 H 0.072 0.928 16 C -0.575 4.575 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.519 5.519 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.167 4.167 25 C -0.197 4.197 26 O -0.072 6.072 27 C -0.012 4.012 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.189 0.811 37 H 0.230 0.770 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.056 0.944 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.159 -21.712 1.600 22.165 hybrid contribution -1.074 -0.409 -0.355 1.203 sum 3.085 -22.121 1.245 22.370 Atomic orbital electron populations 1.21786 0.92497 1.02812 1.03980 1.22829 0.96186 0.81681 1.01374 1.86198 1.18114 1.29504 1.88529 1.17694 0.83160 0.88995 0.99905 1.20924 0.94006 0.96850 1.09450 1.20490 0.93999 0.97137 1.00115 1.20230 0.99563 0.90315 1.02070 1.19756 0.91817 0.94030 1.04302 1.22650 0.98487 0.90421 1.04855 1.22826 0.87240 0.89836 1.04550 1.16730 0.85164 0.82834 0.79107 1.90861 1.43395 1.53923 1.51785 1.46567 1.05472 1.11735 1.69556 1.18950 0.97250 0.73175 0.93904 0.92817 1.21179 1.01680 0.93020 1.41617 0.91941 1.24869 0.97772 0.95822 0.95067 1.69879 1.37021 0.99410 1.45625 0.86483 0.83571 0.77208 0.79727 1.20101 1.21093 1.20125 1.21957 0.93714 1.04580 0.96485 1.21863 0.99225 1.00215 0.98397 1.84130 1.35266 1.12457 1.75367 1.18864 0.91176 0.83817 1.07357 0.91279 0.90327 0.91300 0.91879 0.91893 0.84438 0.85078 0.85090 0.81117 0.77034 0.92426 0.87941 0.94779 0.95540 0.94441 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.31 -4.02 10.14 -19.64 -0.20 -4.22 16 4 C 0.15 1.97 6.70 -39.12 -0.26 1.71 16 5 C -0.19 -1.94 9.03 -39.37 -0.36 -2.29 16 6 C -0.10 -0.92 9.97 -39.96 -0.40 -1.32 16 7 C -0.10 -1.13 10.05 -39.59 -0.40 -1.53 16 8 C -0.10 -1.40 6.38 -105.21 -0.67 -2.07 16 9 C -0.14 -2.24 10.81 -37.23 -0.40 -2.65 16 10 C 0.01 0.12 7.07 -36.91 -0.26 -0.14 16 11 C 0.58 12.13 6.36 -12.71 -0.08 12.05 16 12 O -0.52 -12.04 13.96 5.23 0.07 -11.96 16 13 N -0.69 -14.99 5.02 -56.14 -0.28 -15.27 16 14 C 0.27 6.78 2.24 -69.08 -0.15 6.63 16 15 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 16 C -0.54 -14.27 8.73 -34.44 -0.30 -14.57 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 19 N -0.88 -24.52 11.29 55.43 0.63 -23.90 16 20 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 25 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 26 O -0.17 -3.04 10.28 2.69 0.03 -3.01 16 27 C 0.04 0.57 7.35 -38.24 -0.28 0.29 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 32 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 33 H 0.14 0.96 6.26 -52.49 -0.33 0.63 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.17 2.38 8.06 -52.48 -0.42 1.96 16 37 H 0.40 7.99 8.25 -40.82 -0.34 7.66 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.10 2.73 5.95 -51.93 -0.31 2.42 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 43 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 LS Contribution 359.02 15.07 5.41 5.41 Total: -1.00 -30.55 359.02 -8.06 -38.60 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.79 Total: 6.99 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.90 Total: -8.29 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.34 Total: -39.17 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.10 Total: -19.19 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.55 -8.06 -38.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150530996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.909 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds