Wall clock time and date at job start Tue Mar 31 2020 13:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42893 * 109.47415 * 2 1 4 4 C 1.35968 * 117.00286 * 180.02562 * 3 2 1 5 5 C 1.38265 * 120.11612 * 359.97438 * 4 3 2 6 6 C 1.38777 * 120.67453 * 180.02562 * 5 4 3 7 7 C 1.36629 * 120.49230 * 0.02562 * 6 5 4 8 8 C 1.39768 * 119.81696 * 359.96339 * 7 6 5 9 9 C 1.46255 * 134.15590 * 180.02562 * 8 7 6 10 10 C 1.35807 * 106.09268 * 180.02562 * 9 8 7 11 11 C 1.46991 * 125.13997 * 180.02562 * 10 9 8 12 12 O 1.21654 * 120.00390 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99885 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00090 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47140 * 34.99611 * 14 13 11 16 16 C 1.50701 * 109.47419 * 155.00130 * 14 13 11 17 17 H 1.07998 * 119.99913 * 359.97438 * 16 14 13 18 18 C 1.37876 * 120.00322 * 179.97438 * 16 14 13 19 19 N 1.31521 * 119.99853 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00422 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46950 * 59.99502 * 20 18 16 22 22 H 1.48490 * 109.47393 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46997 * 300.00331 * 20 18 16 24 24 C 1.53008 * 109.46862 * 274.99537 * 14 13 11 25 25 C 1.53003 * 109.46423 * 65.00011 * 24 14 13 26 26 O 1.34926 * 109.71776 * 0.02562 * 10 9 8 27 27 C 1.34767 * 110.84487 * 0.02562 * 26 10 9 28 28 H 1.08996 * 109.46928 * 59.99882 * 1 2 3 29 29 H 1.08999 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46699 * 300.00221 * 1 2 3 31 31 H 1.09000 * 109.46854 * 239.99505 * 2 1 3 32 32 H 1.09001 * 109.47167 * 120.00494 * 2 1 3 33 33 H 1.07994 * 119.66176 * 359.74751 * 5 4 3 34 34 H 1.07999 * 119.75055 * 179.97438 * 6 5 4 35 35 H 1.08004 * 120.08790 * 180.02562 * 7 6 5 36 36 H 1.08006 * 126.95446 * 0.06710 * 9 8 7 37 37 H 0.97005 * 120.00312 * 359.97438 * 13 11 10 38 38 H 0.96998 * 119.99675 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.46850 * 184.99497 * 24 14 13 40 40 H 1.08990 * 109.47225 * 305.00467 * 24 14 13 41 41 H 1.09007 * 109.46872 * 179.97438 * 25 24 14 42 42 H 1.08993 * 109.47627 * 299.99488 * 25 24 14 43 43 H 1.09004 * 109.46946 * 60.00234 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3543 1.5253 -0.0005 5 6 4.1988 0.4305 -0.0005 6 6 5.5763 0.5989 -0.0005 7 6 6.1216 1.8517 0.0000 8 6 5.2871 2.9729 -0.0003 9 6 5.5205 4.4167 -0.0004 10 6 4.2924 4.9966 -0.0001 11 6 4.0406 6.4448 -0.0006 12 8 4.9743 7.2246 -0.0018 13 7 2.7752 6.9087 -0.0007 14 6 2.5242 8.3520 -0.0018 15 1 3.2912 8.8538 -0.5917 16 6 1.1693 8.6259 -0.6022 17 1 0.5567 7.8068 -0.9487 18 6 0.7119 9.9221 -0.7091 19 7 1.4577 10.9196 -0.2866 20 14 -0.9672 10.2617 -1.4539 21 1 -2.0124 9.5774 -0.6511 22 1 -1.2222 11.7245 -1.4538 23 1 -1.0021 9.7527 -2.8486 24 6 2.5608 8.8771 1.4349 25 6 3.9722 8.7120 2.0022 26 8 3.3385 4.0424 0.0008 27 6 3.8901 2.8128 0.0016 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.7822 -0.5658 0.0041 34 1 6.2221 -0.2667 -0.0001 35 1 7.1946 1.9752 -0.0005 36 1 6.4761 4.9200 -0.0013 37 1 2.0306 6.2869 -0.0008 38 1 1.1357 11.8315 -0.3615 39 1 2.2870 9.9320 1.4432 40 1 1.8556 8.3137 2.0457 41 1 3.9985 9.0865 3.0256 42 1 4.2461 7.6571 1.9939 43 1 4.6775 9.2754 1.3913 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150530996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:06 Heat of formation + Delta-G solvation = -70.389600 kcal Electronic energy + Delta-G solvation = -26114.198797 eV Core-core repulsion = 22318.393660 eV Total energy + Delta-G solvation = -3795.805137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.61066 -40.89218 -40.37409 -38.03498 -37.10911 -34.42023 -33.67930 -32.95726 -32.63173 -30.87836 -30.16687 -29.00372 -25.94333 -24.87943 -24.23069 -23.55331 -22.35634 -21.95143 -21.30028 -19.86026 -18.94100 -18.49850 -17.89966 -17.72657 -17.31034 -16.89264 -16.55125 -16.21192 -16.10855 -16.02017 -15.23100 -14.67569 -14.50719 -14.42811 -14.15707 -14.08335 -13.89523 -13.54114 -13.39756 -13.20984 -13.08600 -12.96666 -12.90558 -12.68776 -12.43346 -12.23367 -12.13409 -12.09915 -11.80758 -11.65033 -11.24085 -11.12659 -10.89159 -10.57352 -9.90724 -9.66251 -8.91489 -8.19627 -6.37301 -0.49826 0.28356 0.77931 1.36347 1.43584 1.45243 1.53305 2.10426 2.11048 2.25918 2.46815 2.63355 3.09540 3.40945 3.64874 3.81624 3.94522 4.07051 4.08229 4.20895 4.25375 4.31242 4.40289 4.45971 4.53190 4.57654 4.70361 4.78128 4.93452 4.98430 5.01886 5.06235 5.19778 5.23917 5.27179 5.36463 5.39527 5.41871 5.51925 5.56033 5.70616 5.76383 5.86649 6.09797 6.37838 6.65444 6.74051 7.13911 7.35529 8.85723 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013670 B = 0.003463 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.776580 B = 8082.904317 C = 9696.418131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.044 3.956 3 O -0.340 6.340 4 C 0.124 3.876 5 C -0.172 4.172 6 C -0.087 4.087 7 C -0.102 4.102 8 C -0.116 4.116 9 C -0.119 4.119 10 C -0.032 4.032 11 C 0.583 3.417 12 O -0.551 6.551 13 N -0.690 5.690 14 C 0.277 3.723 15 H 0.011 0.989 16 C -0.556 4.556 17 H 0.066 0.934 18 C 0.021 3.979 19 N -0.910 5.910 20 Si 0.970 3.030 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.272 1.272 24 C -0.122 4.122 25 C -0.126 4.126 26 O -0.193 6.193 27 C 0.005 3.995 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.160 0.840 36 H 0.184 0.816 37 H 0.403 0.597 38 H 0.268 0.732 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -26.632 1.690 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 O -0.256 6.256 4 C 0.078 3.922 5 C -0.190 4.190 6 C -0.105 4.105 7 C -0.120 4.120 8 C -0.117 4.117 9 C -0.140 4.140 10 C -0.082 4.082 11 C 0.368 3.632 12 O -0.432 6.432 13 N -0.337 5.337 14 C 0.174 3.826 15 H 0.029 0.971 16 C -0.594 4.594 17 H 0.084 0.916 18 C -0.180 4.180 19 N -0.548 5.548 20 Si 0.795 3.205 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.198 1.198 24 C -0.161 4.161 25 C -0.184 4.184 26 O -0.096 6.096 27 C -0.042 4.042 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.192 0.808 34 H 0.194 0.806 35 H 0.177 0.823 36 H 0.202 0.798 37 H 0.237 0.763 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.568 -25.643 1.708 26.103 hybrid contribution -1.121 0.542 -0.395 1.307 sum 3.447 -25.101 1.312 25.371 Atomic orbital electron populations 1.21839 0.92163 1.04313 1.02757 1.23183 0.96580 0.80036 1.03172 1.86171 1.18222 1.32389 1.88775 1.18035 0.83998 0.88849 1.01277 1.21476 0.94189 0.97363 1.05991 1.21061 0.94166 0.97863 0.97363 1.20677 1.00736 0.89808 1.00778 1.19952 0.91871 0.93982 1.05859 1.22959 0.97961 0.91642 1.01438 1.22124 0.88361 0.88543 1.09197 1.16973 0.84221 0.84277 0.77727 1.90822 1.43923 1.55469 1.52977 1.46346 1.06407 1.10467 1.70467 1.18575 0.95484 0.74826 0.93695 0.97143 1.21493 1.02264 0.93556 1.42094 0.91572 1.25718 1.01458 0.95508 0.95296 1.70016 1.38715 0.99742 1.46349 0.85424 0.79059 0.77139 0.78893 1.19132 1.20626 1.19763 1.21807 0.95029 1.03007 0.96222 1.21707 0.97329 1.00104 0.99229 1.84044 1.35604 1.13383 1.76550 1.19518 0.92333 0.83831 1.08556 0.92555 0.87405 0.92495 0.89963 0.89903 0.80780 0.80559 0.82283 0.79835 0.76261 0.92315 0.90221 0.94304 0.93091 0.94313 0.94726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.04 0.62 5.46 71.98 0.39 1.01 16 3 O -0.34 -8.60 10.14 -93.19 -0.95 -9.54 16 4 C 0.12 3.11 6.70 22.57 0.15 3.26 16 5 C -0.17 -2.71 9.03 22.41 0.20 -2.51 16 6 C -0.09 -1.16 9.97 22.02 0.22 -0.94 16 7 C -0.10 -1.86 10.05 22.26 0.22 -1.64 16 8 C -0.12 -3.17 6.38 -20.24 -0.13 -3.30 16 9 C -0.12 -3.77 10.81 23.79 0.26 -3.51 16 10 C -0.03 -1.21 7.07 24.00 0.17 -1.04 16 11 C 0.58 25.87 6.36 86.54 0.55 26.42 16 12 O -0.55 -26.92 13.96 -4.20 -0.06 -26.97 16 13 N -0.69 -31.95 5.02 -449.77 -2.26 -34.21 16 14 C 0.28 14.76 2.24 44.25 0.10 14.86 16 15 H 0.01 0.66 7.58 -2.39 -0.02 0.64 16 16 C -0.56 -30.62 8.73 25.60 0.22 -30.40 16 17 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 18 C 0.02 1.15 5.29 84.65 0.45 1.60 16 19 N -0.91 -52.25 11.29 21.45 0.24 -52.01 16 20 Si 0.97 42.97 29.54 68.60 2.03 45.00 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 C -0.12 -6.18 5.45 30.60 0.17 -6.01 16 25 C -0.13 -5.81 8.51 71.98 0.61 -5.20 16 26 O -0.19 -7.22 10.28 -13.30 -0.14 -7.35 16 27 C 0.01 0.17 7.35 23.14 0.17 0.34 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.08 0.82 7.66 -2.39 -0.02 0.80 16 32 H 0.08 0.81 7.66 -2.39 -0.02 0.79 16 33 H 0.17 1.42 6.26 -2.91 -0.02 1.40 16 34 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 35 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.18 5.08 8.06 -2.91 -0.02 5.06 16 37 H 0.40 17.31 8.25 -92.70 -0.77 16.55 16 38 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.08 4.43 5.95 -2.39 -0.01 4.41 16 40 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.04 1.74 5.64 -2.39 -0.01 1.73 16 43 H 0.03 1.67 7.84 -2.39 -0.02 1.66 16 Total: -1.00 -70.96 359.02 3.64 -67.32 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.28 Total: 26.05 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 4.50 Total: -8.28 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -2.01 Total: -86.21 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -1.14 Total: -43.87 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -70.96 3.64 -67.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150530996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.074 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds