Wall clock time and date at job start Tue Mar 31 2020 11:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46539 * 2 1 4 4 C 1.31889 * 124.30397 * 90.00770 * 3 2 1 5 5 C 1.45071 * 114.81146 * 180.24572 * 4 3 2 6 6 C 1.39763 * 111.99710 * 359.50716 * 5 4 3 7 7 N 1.33894 * 119.10578 * 180.22560 * 6 5 4 8 8 C 1.31289 * 121.04172 * 0.28972 * 7 6 5 9 9 N 1.32077 * 122.17966 * 0.02562 * 8 7 6 10 10 C 1.32469 * 121.19286 * 359.97438 * 9 8 7 11 11 N 1.38331 * 120.53357 * 180.02562 * 10 9 8 12 12 C 1.46500 * 119.99471 * 359.97438 * 11 10 9 13 13 H 1.08994 * 109.42238 * 325.00496 * 12 11 10 14 14 C 1.52961 * 109.41010 * 84.86230 * 12 11 10 15 15 C 1.53241 * 109.39981 * 183.77020 * 14 12 11 16 16 C 1.51266 * 108.48197 * 305.26615 * 15 14 12 17 17 C 1.37878 * 120.85040 * 231.36342 * 16 15 14 18 18 N 1.31521 * 120.00123 * 180.02562 * 17 16 15 19 19 Si 1.86800 * 119.99950 * 0.02701 * 17 16 15 20 20 H 1.48497 * 109.47492 * 90.00028 * 19 17 16 21 21 H 1.48506 * 109.47228 * 210.00163 * 19 17 16 22 22 H 1.48496 * 109.46800 * 329.99611 * 19 17 16 23 23 C 1.51267 * 118.30379 * 51.38848 * 16 15 14 24 24 C 1.52959 * 109.41089 * 205.14056 * 12 11 10 25 25 S 1.75352 * 124.30369 * 269.97389 * 3 2 1 26 26 H 1.09000 * 109.47344 * 60.00234 * 1 2 3 27 27 H 1.09008 * 109.46534 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46656 * 299.99643 * 1 2 3 29 29 H 1.08996 * 109.46939 * 240.00673 * 2 1 3 30 30 H 1.09000 * 109.47344 * 119.99766 * 2 1 3 31 31 H 1.08002 * 122.59034 * 359.96935 * 4 3 2 32 32 H 1.08004 * 118.90470 * 179.97438 * 8 7 6 33 33 H 0.97000 * 120.00120 * 180.02562 * 11 10 9 34 34 H 1.08997 * 109.48672 * 303.68181 * 14 12 11 35 35 H 1.09003 * 109.48061 * 63.72245 * 14 12 11 36 36 H 1.09002 * 109.61895 * 185.58748 * 15 14 12 37 37 H 1.09002 * 109.84384 * 65.07783 * 15 14 12 38 38 H 0.96998 * 119.99840 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.63075 * 188.93641 * 23 16 15 40 40 H 1.09009 * 109.78344 * 68.45695 * 23 16 15 41 41 H 1.09001 * 109.48803 * 296.27771 * 24 12 11 42 42 H 1.09000 * 109.48301 * 56.31181 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2801 2.1217 1.0895 5 6 2.7515 3.4726 0.8502 6 6 2.8586 3.7558 -0.5142 7 7 3.2867 4.9654 -0.8967 8 6 3.6101 5.8801 -0.0121 9 7 3.5324 5.6599 1.2878 10 6 3.1199 4.4942 1.7629 11 7 3.0432 4.2786 3.1271 12 6 3.4205 5.3440 4.0593 13 1 4.2486 5.9157 3.6404 14 6 2.2245 6.2710 4.2828 15 6 2.6458 7.4374 5.1829 16 6 3.2406 6.8720 6.4536 17 6 2.7983 7.2933 7.6897 18 7 3.3276 6.7908 8.7838 19 14 1.4473 8.5776 7.8104 20 1 0.1247 7.9033 7.8431 21 1 1.6288 9.3719 9.0520 22 1 1.5145 9.4789 6.6321 23 6 4.3335 5.8331 6.3336 24 6 3.8515 4.7258 5.3903 25 16 2.3622 2.3524 -1.4485 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.1385 1.7222 2.0829 32 1 3.9517 6.8441 -0.3591 33 1 2.7405 3.4219 3.4665 34 1 1.8808 6.6588 3.3239 35 1 1.4178 5.7148 4.7604 36 1 1.7745 8.0457 5.4255 37 1 3.3888 8.0497 4.6717 38 1 3.0162 7.0869 9.6534 39 1 4.5465 5.4106 7.3155 40 1 5.2357 6.2918 5.9288 41 1 3.0055 4.2071 5.8412 42 1 4.6617 4.0176 5.2169 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157049715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:52 Heat of formation + Delta-G solvation = 41.472468 kcal Electronic energy + Delta-G solvation = -23746.568372 eV Core-core repulsion = 20430.659561 eV Total energy + Delta-G solvation = -3315.908811 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85797 -37.76505 -36.93276 -34.93882 -33.51365 -32.45774 -31.15832 -29.74881 -28.82998 -27.10576 -25.07197 -24.03823 -22.69507 -21.84104 -21.50650 -20.71916 -19.56733 -18.38700 -17.29601 -16.57525 -16.21901 -15.60220 -15.18755 -14.76939 -14.52033 -14.46624 -14.20291 -14.05506 -13.44021 -13.34056 -12.92843 -12.87136 -12.54229 -12.18252 -11.94457 -11.84513 -11.68151 -11.55964 -11.42004 -11.02909 -10.92104 -10.80799 -10.76196 -10.65489 -10.16478 -10.03696 -9.66790 -9.28163 -9.11406 -8.93473 -8.72737 -8.51707 -8.45201 -7.62225 -6.15526 -4.06413 0.56137 1.11653 1.31660 1.77888 2.13229 3.21174 3.27060 3.33261 3.35457 3.94114 4.24078 4.33853 4.34709 4.63428 4.74514 4.84223 4.90318 4.98691 5.13266 5.28872 5.45608 5.49546 5.59612 5.61710 5.78523 5.81290 5.88898 6.11291 6.12633 6.18953 6.40698 6.51220 6.63597 6.79391 6.80493 6.87074 6.96951 7.07222 7.36514 7.39136 7.57491 7.62902 7.69329 7.78464 8.32096 8.40321 8.90879 9.49655 10.93991 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.003175 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.015380 B = 8816.530689 C = 9415.922131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C -0.185 4.185 4 C -0.085 4.085 5 C -0.243 4.243 6 C 0.123 3.877 7 N -0.550 5.550 8 C 0.360 3.640 9 N -0.579 5.579 10 C 0.494 3.506 11 N -0.687 5.687 12 C 0.158 3.842 13 H 0.086 0.914 14 C -0.111 4.111 15 C -0.012 4.012 16 C -0.490 4.490 17 C 0.076 3.924 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.266 1.266 23 C 0.015 3.985 24 C -0.116 4.116 25 S 0.142 5.858 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.142 0.858 32 H 0.199 0.801 33 H 0.405 0.595 34 H 0.037 0.963 35 H 0.048 0.952 36 H 0.030 0.970 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.061 0.939 40 H 0.007 0.993 41 H 0.054 0.946 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 -11.954 -16.753 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.301 4.301 4 C -0.115 4.115 5 C -0.261 4.261 6 C -0.127 4.127 7 N -0.273 5.273 8 C 0.066 3.934 9 N -0.306 5.306 10 C 0.240 3.760 11 N -0.313 5.313 12 C 0.055 3.945 13 H 0.104 0.896 14 C -0.150 4.150 15 C -0.050 4.050 16 C -0.509 4.509 17 C -0.126 4.126 18 N -0.527 5.527 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.191 1.191 23 C -0.023 4.023 24 C -0.155 4.155 25 S 0.400 5.600 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.160 0.840 32 H 0.216 0.784 33 H 0.241 0.759 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.985 -11.292 -18.231 21.651 hybrid contribution -1.054 -0.005 2.090 2.340 sum -4.038 -11.297 -16.141 20.111 Atomic orbital electron populations 1.21809 0.94234 1.02009 1.02677 1.20107 0.96239 0.89228 1.03387 1.23835 1.09277 1.01128 0.95850 1.20420 1.00395 0.91342 0.99350 1.20033 1.14819 0.96952 0.94335 1.23510 0.98259 0.97565 0.93367 1.68016 1.20010 1.00293 1.38997 1.24636 0.88483 0.97139 0.83101 1.67960 1.24750 1.20642 1.17240 1.18494 0.84695 0.87220 0.85572 1.45354 1.66960 1.17768 1.01255 1.21219 0.98075 0.87002 0.88155 0.89592 1.21910 0.96590 0.98184 0.98342 1.19701 0.96578 0.93471 0.95223 1.20041 1.19296 1.22104 0.89474 1.24842 0.96427 0.96075 0.95283 1.69831 1.42315 1.42883 0.97708 0.86659 0.82268 0.82196 0.77253 1.20476 1.21612 1.19114 1.19319 0.94812 0.92406 0.95759 1.21971 0.99308 0.99553 0.94629 1.84007 1.68192 1.01272 1.06494 0.92356 0.91988 0.92182 0.90646 0.89827 0.84040 0.78445 0.75867 0.94376 0.93277 0.95139 0.96065 0.92550 0.92076 0.97483 0.92749 0.94601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.05 -0.37 6.37 -27.88 -0.18 -0.55 16 3 C -0.18 -1.90 5.64 -36.21 -0.20 -2.10 16 4 C -0.08 -0.98 9.85 -38.78 -0.38 -1.36 16 5 C -0.24 -3.52 6.08 -105.24 -0.64 -4.16 16 6 C 0.12 1.81 7.69 -16.08 -0.12 1.68 16 7 N -0.55 -8.41 10.47 -13.32 -0.14 -8.55 16 8 C 0.36 5.24 12.27 -92.34 -1.13 4.10 16 9 N -0.58 -9.60 9.30 -13.44 -0.12 -9.72 16 10 C 0.49 7.89 7.55 -154.56 -1.17 6.73 16 11 N -0.69 -10.67 5.20 -53.38 -0.28 -10.95 16 12 C 0.16 2.92 2.38 -67.97 -0.16 2.76 16 13 H 0.09 1.72 7.56 -51.93 -0.39 1.33 16 14 C -0.11 -2.24 5.51 -26.63 -0.15 -2.38 16 15 C -0.01 -0.26 5.60 -27.48 -0.15 -0.42 16 16 C -0.49 -12.50 5.51 -98.92 -0.55 -13.04 16 17 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 18 N -0.89 -24.98 12.73 55.43 0.71 -24.28 16 19 Si 0.89 20.82 27.27 -169.99 -4.64 16.19 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.10 6.46 56.52 0.37 -5.73 16 23 C 0.01 0.36 5.97 -27.48 -0.16 0.19 16 24 C -0.12 -2.28 5.40 -26.63 -0.14 -2.42 16 25 S 0.14 1.63 23.20 -107.50 -2.49 -0.87 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.14 1.35 7.69 -52.49 -0.40 0.95 16 32 H 0.20 2.15 8.06 -52.48 -0.42 1.73 16 33 H 0.41 5.36 7.95 -40.82 -0.32 5.04 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.03 0.70 4.78 -51.93 -0.25 0.45 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.06 1.59 7.07 -51.93 -0.37 1.23 16 40 H 0.01 0.16 8.14 -51.92 -0.42 -0.26 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -29.16 350.99 -12.53 -41.68 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.98 Total: 0.89 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -4.87 Total: -9.69 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.16 Total: -53.49 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.64 Total: 16.19 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.49 Total: -0.87 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.16 -12.53 -41.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.157 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds