Wall clock time and date at job start Tue Mar 31 2020 11:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46539 * 2 1 4 4 C 1.31889 * 124.30397 * 90.00770 * 3 2 1 5 5 C 1.45071 * 114.81146 * 180.24572 * 4 3 2 6 6 C 1.39763 * 111.99710 * 359.50716 * 5 4 3 7 7 N 1.33894 * 119.10578 * 180.22560 * 6 5 4 8 8 C 1.31289 * 121.04172 * 0.28972 * 7 6 5 9 9 N 1.32077 * 122.17966 * 0.02562 * 8 7 6 10 10 C 1.32469 * 121.19286 * 359.97438 * 9 8 7 11 11 N 1.38331 * 120.53357 * 180.02562 * 10 9 8 12 12 C 1.46500 * 119.99471 * 359.97438 * 11 10 9 13 13 H 1.08994 * 109.42238 * 325.00496 * 12 11 10 14 14 C 1.52961 * 109.41010 * 84.86230 * 12 11 10 15 15 C 1.53241 * 109.39981 * 183.77020 * 14 12 11 16 16 C 1.51266 * 108.48197 * 305.26615 * 15 14 12 17 17 C 1.37878 * 120.85040 * 231.36342 * 16 15 14 18 18 N 1.31521 * 120.00123 * 180.02562 * 17 16 15 19 19 Si 1.86800 * 119.99950 * 0.02701 * 17 16 15 20 20 H 1.48497 * 109.47492 * 90.00028 * 19 17 16 21 21 H 1.48506 * 109.47228 * 210.00163 * 19 17 16 22 22 H 1.48496 * 109.46800 * 329.99611 * 19 17 16 23 23 C 1.51267 * 118.30379 * 51.38848 * 16 15 14 24 24 C 1.52959 * 109.41089 * 205.14056 * 12 11 10 25 25 S 1.75352 * 124.30369 * 269.97389 * 3 2 1 26 26 H 1.09000 * 109.47344 * 60.00234 * 1 2 3 27 27 H 1.09008 * 109.46534 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46656 * 299.99643 * 1 2 3 29 29 H 1.08996 * 109.46939 * 240.00673 * 2 1 3 30 30 H 1.09000 * 109.47344 * 119.99766 * 2 1 3 31 31 H 1.08002 * 122.59034 * 359.96935 * 4 3 2 32 32 H 1.08004 * 118.90470 * 179.97438 * 8 7 6 33 33 H 0.97000 * 120.00120 * 180.02562 * 11 10 9 34 34 H 1.08997 * 109.48672 * 303.68181 * 14 12 11 35 35 H 1.09003 * 109.48061 * 63.72245 * 14 12 11 36 36 H 1.09002 * 109.61895 * 185.58748 * 15 14 12 37 37 H 1.09002 * 109.84384 * 65.07783 * 15 14 12 38 38 H 0.96998 * 119.99840 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.63075 * 188.93641 * 23 16 15 40 40 H 1.09009 * 109.78344 * 68.45695 * 23 16 15 41 41 H 1.09001 * 109.48803 * 296.27771 * 24 12 11 42 42 H 1.09000 * 109.48301 * 56.31181 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2801 2.1217 1.0895 5 6 2.7515 3.4726 0.8502 6 6 2.8586 3.7558 -0.5142 7 7 3.2867 4.9654 -0.8967 8 6 3.6101 5.8801 -0.0121 9 7 3.5324 5.6599 1.2878 10 6 3.1199 4.4942 1.7629 11 7 3.0432 4.2786 3.1271 12 6 3.4205 5.3440 4.0593 13 1 4.2486 5.9157 3.6404 14 6 2.2245 6.2710 4.2828 15 6 2.6458 7.4374 5.1829 16 6 3.2406 6.8720 6.4536 17 6 2.7983 7.2933 7.6897 18 7 3.3276 6.7908 8.7838 19 14 1.4473 8.5776 7.8104 20 1 0.1247 7.9033 7.8431 21 1 1.6288 9.3719 9.0520 22 1 1.5145 9.4789 6.6321 23 6 4.3335 5.8331 6.3336 24 6 3.8515 4.7258 5.3903 25 16 2.3622 2.3524 -1.4485 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.1385 1.7222 2.0829 32 1 3.9517 6.8441 -0.3591 33 1 2.7405 3.4219 3.4665 34 1 1.8808 6.6588 3.3239 35 1 1.4178 5.7148 4.7604 36 1 1.7745 8.0457 5.4255 37 1 3.3888 8.0497 4.6717 38 1 3.0162 7.0869 9.6534 39 1 4.5465 5.4106 7.3155 40 1 5.2357 6.2918 5.9288 41 1 3.0055 4.2071 5.8412 42 1 4.6617 4.0176 5.2169 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157049715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:52 Heat of formation + Delta-G solvation = 27.339881 kcal Electronic energy + Delta-G solvation = -23747.181207 eV Core-core repulsion = 20430.659561 eV Total energy + Delta-G solvation = -3316.521646 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.96200 -39.28596 -37.79976 -36.43645 -34.34773 -34.09502 -32.54764 -31.47154 -29.95066 -28.63751 -26.02204 -25.21940 -23.68748 -23.44800 -23.18381 -21.63289 -21.19032 -19.50334 -18.47391 -18.07891 -17.38504 -16.77841 -16.43074 -16.26711 -16.03970 -15.46021 -15.14490 -15.07853 -14.71514 -14.62279 -14.31912 -14.11515 -13.98888 -13.76695 -13.51939 -13.07844 -12.77922 -12.62937 -12.54255 -12.46061 -12.28638 -12.24335 -11.93243 -11.84350 -11.68925 -11.62590 -11.42273 -10.91575 -10.66572 -10.54785 -10.23578 -10.13144 -9.48573 -8.73327 -8.17709 -6.11359 -0.45354 0.16216 0.17361 0.87318 1.20053 1.37223 1.41904 1.49858 2.02950 2.40562 2.81814 3.10781 3.29534 3.34856 3.57563 3.84994 3.93714 4.04943 4.19254 4.26100 4.44306 4.48080 4.51528 4.70233 4.74724 4.85886 4.88203 4.95946 5.01183 5.07127 5.08652 5.09132 5.21421 5.24561 5.31798 5.39172 5.41297 5.56836 5.61746 5.71571 5.75434 5.83208 6.07567 6.34212 6.54348 6.94635 7.28061 7.46954 8.92971 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.003175 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.015380 B = 8816.530689 C = 9415.922131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C -0.168 4.168 4 C -0.103 4.103 5 C -0.244 4.244 6 C 0.088 3.912 7 N -0.560 5.560 8 C 0.349 3.651 9 N -0.603 5.603 10 C 0.480 3.520 11 N -0.682 5.682 12 C 0.176 3.824 13 H 0.071 0.929 14 C -0.102 4.102 15 C -0.013 4.013 16 C -0.498 4.498 17 C 0.025 3.975 18 N -0.929 5.929 19 Si 0.937 3.063 20 H -0.274 1.274 21 H -0.292 1.292 22 H -0.257 1.257 23 C 0.011 3.989 24 C -0.103 4.103 25 S 0.168 5.832 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.163 0.837 32 H 0.226 0.774 33 H 0.417 0.583 34 H 0.043 0.957 35 H 0.047 0.953 36 H 0.029 0.971 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.032 0.968 40 H 0.000 1.000 41 H 0.054 0.946 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 -13.641 -18.625 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.284 4.284 4 C -0.132 4.132 5 C -0.262 4.262 6 C -0.160 4.160 7 N -0.282 5.282 8 C 0.057 3.943 9 N -0.331 5.331 10 C 0.227 3.773 11 N -0.312 5.312 12 C 0.072 3.928 13 H 0.089 0.911 14 C -0.141 4.141 15 C -0.051 4.051 16 C -0.517 4.517 17 C -0.173 4.173 18 N -0.569 5.569 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.219 1.219 22 H -0.182 1.182 23 C -0.027 4.027 24 C -0.141 4.141 25 S 0.427 5.573 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.180 0.820 32 H 0.242 0.758 33 H 0.255 0.745 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.018 0.982 41 H 0.072 0.928 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.127 -12.999 -20.160 24.340 hybrid contribution -0.669 0.424 2.531 2.652 sum -4.796 -12.576 -17.629 22.180 Atomic orbital electron populations 1.21809 0.93707 1.03049 1.02095 1.20281 0.96536 0.87271 1.04926 1.24308 1.07116 1.02137 0.94877 1.20597 1.01452 0.90298 1.00853 1.20241 1.14241 0.97811 0.93920 1.24047 0.99133 0.98351 0.94515 1.68071 1.20055 1.00788 1.39318 1.25177 0.88414 0.98156 0.82586 1.67955 1.25468 1.21360 1.18290 1.18648 0.85261 0.87789 0.85637 1.44940 1.67872 1.17530 1.00831 1.20726 0.96800 0.87292 0.87958 0.91072 1.21759 0.97136 0.97411 0.97781 1.19698 0.96296 0.94473 0.94628 1.20607 1.19009 1.21769 0.90356 1.25546 0.98580 0.97930 0.95265 1.69955 1.44108 1.44720 0.98090 0.85858 0.80158 0.80366 0.77231 1.19919 1.21899 1.18171 1.19270 0.94497 0.93544 0.95389 1.21727 0.99879 0.98310 0.94223 1.83933 1.67124 0.99688 1.06596 0.92888 0.90205 0.92847 0.89237 0.88164 0.81971 0.75793 0.74463 0.93799 0.93415 0.95255 0.96293 0.92781 0.94955 0.98168 0.92769 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.89 71.98 0.71 -0.85 16 2 C -0.05 -0.56 6.37 29.85 0.19 -0.37 16 3 C -0.17 -2.97 5.64 24.85 0.14 -2.83 16 4 C -0.10 -2.12 9.85 23.19 0.23 -1.89 16 5 C -0.24 -6.68 6.08 -20.26 -0.12 -6.81 16 6 C 0.09 2.48 7.69 84.75 0.65 3.14 16 7 N -0.56 -16.60 10.47 -196.05 -2.05 -18.66 16 8 C 0.35 9.91 12.27 180.95 2.22 12.13 16 9 N -0.60 -19.56 9.30 -196.42 -1.83 -21.38 16 10 C 0.48 14.78 7.55 133.95 1.01 15.79 16 11 N -0.68 -20.19 5.20 -322.78 -1.68 -21.87 16 12 C 0.18 6.34 2.38 44.96 0.11 6.45 16 13 H 0.07 2.81 7.56 -2.39 -0.02 2.79 16 14 C -0.10 -3.98 5.51 30.66 0.17 -3.81 16 15 C -0.01 -0.58 5.60 30.11 0.17 -0.41 16 16 C -0.50 -25.57 5.51 -16.17 -0.09 -25.66 16 17 C 0.03 1.36 5.46 84.65 0.46 1.82 16 18 N -0.93 -53.44 12.73 21.45 0.27 -53.16 16 19 Si 0.94 42.84 27.27 68.60 1.87 44.71 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.26 -11.26 6.46 99.48 0.64 -10.62 16 23 C 0.01 0.53 5.97 30.11 0.18 0.71 16 24 C -0.10 -3.96 5.40 30.66 0.17 -3.79 16 25 S 0.17 3.48 23.20 -56.49 -1.31 2.17 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.16 2.60 7.69 -2.91 -0.02 2.57 16 32 H 0.23 4.66 8.06 -2.91 -0.02 4.64 16 33 H 0.42 10.18 7.95 -92.71 -0.74 9.45 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.03 1.31 4.78 -2.39 -0.01 1.30 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.03 1.73 7.07 -2.39 -0.02 1.71 16 40 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -63.26 350.99 1.71 -61.55 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.24 Total: 13.03 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 6.19 Total: -6.38 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -5.28 Total: -115.08 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.87 Total: 44.71 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.31 Total: 2.17 kcal Total: -63.26 1.71 -61.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.886 kcal (2) G-P(sol) polarization free energy of solvation -63.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds