Wall clock time and date at job start Tue Mar 31 2020 11:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47145 * 2 1 4 4 N 1.31283 * 118.91037 * 269.98284 * 3 2 1 5 5 C 1.33904 * 121.03627 * 180.02562 * 4 3 2 6 6 S 1.75752 * 131.27808 * 179.97438 * 5 4 3 7 7 C 1.75349 * 92.18570 * 180.02562 * 6 5 4 8 8 C 1.31890 * 111.39493 * 359.97438 * 7 6 5 9 9 C 1.39751 * 119.10890 * 359.74159 * 5 4 3 10 10 C 1.41851 * 117.54080 * 0.48998 * 9 5 4 11 11 N 1.38323 * 120.53059 * 179.78655 * 10 9 5 12 12 C 1.46501 * 120.00148 * 179.72318 * 11 10 9 13 13 H 1.09000 * 109.41075 * 324.99935 * 12 11 10 14 14 C 1.52959 * 109.41416 * 84.85415 * 12 11 10 15 15 C 1.53085 * 109.47638 * 183.71137 * 14 12 11 16 16 C 1.51272 * 108.49827 * 305.32114 * 15 14 12 17 17 C 1.37882 * 120.85161 * 231.33732 * 16 15 14 18 18 N 1.31518 * 119.99640 * 348.87494 * 17 16 15 19 19 Si 1.86798 * 120.00063 * 168.87802 * 17 16 15 20 20 H 1.48495 * 109.47104 * 354.65763 * 19 17 16 21 21 H 1.48507 * 109.47011 * 114.65672 * 19 17 16 22 22 H 1.48503 * 109.46921 * 234.65582 * 19 17 16 23 23 C 1.51266 * 118.29888 * 51.35157 * 16 15 14 24 24 C 1.52955 * 109.41522 * 205.14140 * 12 11 10 25 25 N 1.32079 * 118.90912 * 90.00224 * 3 2 1 26 26 H 1.09009 * 109.46781 * 299.99595 * 1 2 3 27 27 H 1.09000 * 109.47775 * 59.99374 * 1 2 3 28 28 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46656 * 240.00755 * 2 1 3 30 30 H 1.08994 * 109.47142 * 120.00420 * 2 1 3 31 31 H 1.07996 * 124.30171 * 180.02562 * 7 6 5 32 32 H 1.07999 * 122.59388 * 180.02562 * 8 7 6 33 33 H 0.97009 * 119.99931 * 359.71980 * 11 10 9 34 34 H 1.08994 * 109.48301 * 303.61780 * 14 12 11 35 35 H 1.09005 * 109.47934 * 63.66012 * 14 12 11 36 36 H 1.09006 * 109.64164 * 185.62395 * 15 14 12 37 37 H 1.08998 * 109.81130 * 65.12192 * 15 14 12 38 38 H 0.97002 * 119.99775 * 180.02562 * 18 17 16 39 39 H 1.09000 * 109.62612 * 188.93690 * 23 16 15 40 40 H 1.08997 * 109.78171 * 68.46493 * 23 16 15 41 41 H 1.09005 * 109.48307 * 296.34756 * 24 12 11 42 42 H 1.08998 * 109.48244 * 56.38168 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2442 2.0191 -1.1492 5 6 2.6908 3.2805 -1.1989 6 16 3.0617 4.3263 -2.5618 7 6 3.5295 5.6470 -1.5073 8 6 3.4104 5.3136 -0.2368 9 6 2.9273 3.9655 -0.0040 10 6 2.6869 3.2706 1.2091 11 7 2.9048 3.8879 2.4276 12 6 2.6469 3.1614 3.6733 13 1 1.7886 2.5033 3.5379 14 6 3.8752 2.3261 4.0383 15 6 3.5745 1.4954 5.2885 16 6 3.1090 2.4286 6.3843 17 6 3.6886 2.3953 7.6350 18 7 4.4983 1.4107 7.9584 19 14 3.3235 3.7484 8.8700 20 1 2.4943 4.7974 8.2242 21 1 2.5872 3.1776 10.0264 22 1 4.5989 4.3458 9.3411 23 6 1.9914 3.3992 6.0730 24 6 2.3499 4.1606 4.7926 25 7 2.2452 2.0228 1.1562 26 1 -0.3633 0.5138 0.8901 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8932 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8708 6.6111 -1.8542 32 1 3.6503 5.9928 0.5678 33 1 3.2284 4.8020 2.4573 34 1 4.1204 1.6596 3.2115 35 1 4.7192 2.9874 4.2350 36 1 4.4775 0.9758 5.6092 37 1 2.7921 0.7686 5.0698 38 1 4.9057 1.3870 8.8384 39 1 1.8771 4.1028 6.8976 40 1 1.0594 2.8535 5.9256 41 1 3.2300 4.7785 4.9714 42 1 1.5132 4.7953 4.5007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157054912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:59 Heat of formation + Delta-G solvation = 31.756226 kcal Electronic energy + Delta-G solvation = -24106.138461 eV Core-core repulsion = 20789.808322 eV Total energy + Delta-G solvation = -3316.330139 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.06594 -39.33061 -37.44497 -36.44505 -34.24798 -34.03002 -32.72317 -31.49115 -30.18975 -28.66304 -26.13647 -25.20648 -23.68648 -23.52214 -22.81572 -21.86531 -21.23010 -19.65959 -18.54336 -18.12512 -17.19675 -16.62469 -16.38220 -16.36685 -16.06247 -15.33318 -15.09292 -14.92567 -14.78454 -14.76690 -14.22101 -14.07070 -14.03555 -13.65980 -13.46205 -13.27277 -12.79170 -12.69324 -12.59778 -12.50828 -12.20423 -12.02362 -11.97693 -11.92416 -11.83110 -11.65795 -11.21892 -10.91394 -10.68897 -10.47744 -10.25798 -10.13788 -9.48394 -8.75306 -8.16329 -6.10029 -0.45808 0.18402 0.19006 0.94515 1.24346 1.40977 1.44656 1.53338 2.01583 2.43130 2.74022 3.02703 3.11590 3.41720 3.54955 3.82177 3.99806 4.12975 4.22444 4.32159 4.38391 4.48652 4.52168 4.68066 4.70626 4.89921 4.95134 4.99465 5.00219 5.01541 5.05296 5.13141 5.18428 5.22446 5.27816 5.29556 5.42535 5.57643 5.59684 5.73457 5.78804 5.83193 6.07161 6.34899 6.57078 6.95503 7.29266 7.47728 8.95005 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.003578 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.905428 B = 7823.021286 C = 8864.903878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 C 0.368 3.632 4 N -0.555 5.555 5 C 0.088 3.912 6 S 0.167 5.833 7 C -0.200 4.200 8 C -0.098 4.098 9 C -0.256 4.256 10 C 0.480 3.520 11 N -0.681 5.681 12 C 0.177 3.823 13 H 0.067 0.933 14 C -0.097 4.097 15 C 0.015 3.985 16 C -0.499 4.499 17 C 0.020 3.980 18 N -0.932 5.932 19 Si 0.937 3.063 20 H -0.228 1.228 21 H -0.287 1.287 22 H -0.290 1.290 23 C -0.022 4.022 24 C -0.107 4.107 25 N -0.600 5.600 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.212 0.788 32 H 0.170 0.830 33 H 0.419 0.581 34 H 0.029 0.971 35 H 0.042 0.958 36 H 0.017 0.983 37 H -0.007 1.007 38 H 0.262 0.738 39 H 0.050 0.950 40 H 0.019 0.981 41 H 0.062 0.938 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 9.112 -19.088 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 C 0.095 3.905 4 N -0.278 5.278 5 C -0.161 4.161 6 S 0.424 5.576 7 C -0.334 4.334 8 C -0.127 4.127 9 C -0.275 4.275 10 C 0.227 3.773 11 N -0.311 5.311 12 C 0.073 3.927 13 H 0.086 0.914 14 C -0.136 4.136 15 C -0.023 4.023 16 C -0.518 4.518 17 C -0.178 4.178 18 N -0.572 5.572 19 Si 0.763 3.237 20 H -0.152 1.152 21 H -0.213 1.213 22 H -0.216 1.216 23 C -0.060 4.060 24 C -0.145 4.145 25 N -0.328 5.328 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.228 0.772 32 H 0.187 0.813 33 H 0.258 0.742 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.036 0.964 37 H 0.011 0.989 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.679 7.956 -20.373 22.367 hybrid contribution 0.801 1.205 2.617 2.990 sum -3.878 9.161 -17.756 20.353 Atomic orbital electron populations 1.21608 0.92460 1.03592 1.01419 1.20454 0.97611 0.86550 1.04610 1.23341 0.88207 0.97268 0.81654 1.67891 1.21484 1.08588 1.29868 1.24185 0.98546 0.95240 0.98095 1.83991 1.67244 1.02213 1.04126 1.25494 1.08130 1.04195 0.95534 1.20746 1.00648 0.92739 0.98594 1.20382 1.15098 0.98732 0.93287 1.18670 0.85262 0.87809 0.85598 1.44904 1.67844 1.16478 1.01883 1.20716 0.97215 0.93362 0.81445 0.91445 1.21707 0.97086 0.97876 0.96909 1.19202 0.95982 0.94534 0.92608 1.20609 1.17540 1.17748 0.95932 1.25703 0.95091 0.97529 0.99518 1.70062 1.33271 1.32305 1.21542 0.85830 0.77971 0.81252 0.78677 1.15203 1.21300 1.21615 1.19888 0.95573 0.95452 0.95073 1.21764 1.00948 0.96936 0.94901 1.67770 1.24295 1.09774 1.30970 0.93751 0.92694 0.89139 0.87923 0.89305 0.77173 0.81304 0.74232 0.95241 0.93963 0.96399 0.98853 0.92912 0.93129 0.96281 0.91902 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.89 71.98 0.71 -2.19 16 2 C -0.05 -1.34 6.36 29.85 0.19 -1.15 16 3 C 0.37 11.85 6.89 138.82 0.96 12.81 16 4 N -0.56 -17.73 10.36 -183.88 -1.90 -19.63 16 5 C 0.09 2.57 7.69 84.74 0.65 3.22 16 6 S 0.17 3.36 23.23 -56.49 -1.31 2.05 16 7 C -0.20 -3.08 11.02 66.99 0.74 -2.34 16 8 C -0.10 -1.89 10.03 23.19 0.23 -1.66 16 9 C -0.26 -7.19 6.08 -20.26 -0.12 -7.32 16 10 C 0.48 15.50 7.55 133.95 1.01 16.51 16 11 N -0.68 -20.37 5.20 -322.79 -1.68 -22.05 16 12 C 0.18 6.43 2.38 44.96 0.11 6.53 16 13 H 0.07 2.73 7.56 -2.39 -0.02 2.71 16 14 C -0.10 -4.13 5.50 30.61 0.17 -3.97 16 15 C 0.01 0.76 5.92 30.06 0.18 0.94 16 16 C -0.50 -25.65 5.48 -16.17 -0.09 -25.73 16 17 C 0.02 1.07 5.44 84.66 0.46 1.53 16 18 N -0.93 -54.80 12.82 21.45 0.28 -54.53 16 19 Si 0.94 41.08 27.95 68.60 1.92 43.00 16 20 H -0.23 -8.89 5.58 99.48 0.56 -8.34 16 21 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 C -0.02 -0.94 5.65 30.10 0.17 -0.77 16 24 C -0.11 -3.74 5.40 30.65 0.17 -3.58 16 25 N -0.60 -21.21 9.19 -184.27 -1.69 -22.91 16 26 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.17 2.32 7.69 -2.91 -0.02 2.30 16 33 H 0.42 9.87 7.95 -92.70 -0.74 9.13 16 34 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.02 1.01 7.19 -2.38 -0.02 0.99 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.05 2.08 4.36 -2.39 -0.01 2.06 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -66.55 350.53 1.29 -65.26 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.16 Total: 15.98 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 5.53 Total: -7.16 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -5.00 Total: -119.12 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.92 Total: 43.00 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.31 Total: 2.05 kcal Total: -66.55 1.29 -65.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157054912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.017 kcal (2) G-P(sol) polarization free energy of solvation -66.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds