Wall clock time and date at job start Tue Mar 31 2020 11:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32351 * 122.10272 * 2 1 4 4 S 1.75557 * 110.82988 * 179.97438 * 3 2 1 5 5 C 1.75773 * 91.50436 * 359.97438 * 4 3 2 6 6 C 1.39475 * 131.57345 * 179.97438 * 5 4 3 7 7 N 1.32039 * 119.16227 * 179.97438 * 6 5 4 8 8 C 1.32771 * 120.85147 * 0.02562 * 7 6 5 9 9 N 1.38642 * 118.86416 * 179.97438 * 8 7 6 10 10 C 1.46503 * 119.99847 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47164 * 90.00345 * 10 9 8 12 12 H 1.08003 * 120.00021 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00175 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00046 * 180.02562 * 13 11 10 15 15 Si 1.86790 * 119.99835 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47303 * 90.00210 * 15 13 11 17 17 H 1.48500 * 109.47310 * 210.00131 * 15 13 11 18 18 H 1.48503 * 109.47322 * 330.00273 * 15 13 11 19 19 C 1.46492 * 120.00282 * 0.02562 * 9 8 7 20 20 C 1.54263 * 110.03227 * 57.16335 * 19 9 8 21 21 C 1.54893 * 104.19625 * 217.10818 * 20 19 9 22 22 C 1.54889 * 102.74942 * 37.94077 * 21 20 19 23 23 C 1.53881 * 110.03265 * 299.99745 * 19 9 8 24 24 N 1.31612 * 122.26962 * 0.02562 * 8 7 6 25 25 C 1.35047 * 120.88219 * 359.68547 * 24 8 7 26 26 H 1.09002 * 109.47152 * 90.02440 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02540 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02521 * 1 2 3 29 29 H 1.08007 * 124.58557 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.41667 * 359.97438 * 6 5 4 31 31 H 1.08998 * 109.46903 * 210.00511 * 10 9 8 32 32 H 1.09006 * 109.47198 * 330.00180 * 10 9 8 33 33 H 0.96995 * 120.00123 * 179.97438 * 14 13 11 34 34 H 1.09001 * 110.01829 * 178.60607 * 19 9 8 35 35 H 1.08997 * 110.48825 * 335.78210 * 20 19 9 36 36 H 1.09003 * 110.48834 * 98.43042 * 20 19 9 37 37 H 1.09005 * 110.75605 * 279.62623 * 21 20 19 38 38 H 1.09001 * 110.91373 * 156.33303 * 21 20 19 39 39 H 1.09001 * 110.48343 * 203.37892 * 22 21 20 40 40 H 1.08996 * 110.48417 * 80.74146 * 22 21 20 41 41 H 1.09003 * 110.03088 * 238.56969 * 23 19 9 42 42 H 1.08997 * 110.03169 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2104 1.1211 0.0000 4 16 3.9321 0.7780 0.0007 5 6 3.6339 -0.9543 0.0018 6 6 4.5051 -2.0434 0.0023 7 7 4.0067 -3.2661 0.0037 8 6 2.6941 -3.4663 0.0040 9 7 2.2156 -4.7675 0.0048 10 6 0.7719 -5.0170 0.0047 11 6 0.2774 -5.1037 -1.4162 12 1 0.9691 -4.9845 -2.2370 13 6 -1.0584 -5.3343 -1.6683 14 7 -1.4900 -5.4105 -2.9083 15 14 -2.2549 -5.5399 -0.2487 16 1 -2.8101 -4.2146 0.1267 17 1 -3.3610 -6.4413 -0.6601 18 1 -1.5450 -6.1271 0.9160 19 6 3.1534 -5.8929 0.0060 20 6 4.0951 -5.7948 1.2239 21 6 5.4613 -6.2907 0.6885 22 6 5.4996 -5.7054 -0.7450 23 6 4.0464 -5.8361 -1.2459 24 7 1.8317 -2.4721 0.0025 25 6 2.2530 -1.1890 0.0070 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5142 29 1 1.7830 2.1130 -0.0004 30 1 5.5740 -1.8886 0.0017 31 1 0.5654 -5.9554 0.5192 32 1 0.2622 -4.2015 0.5177 33 1 -2.4296 -5.5730 -3.0857 34 1 2.6057 -6.8350 0.0314 35 1 4.1711 -4.7625 1.5652 36 1 3.7446 -6.4393 2.0300 37 1 5.4935 -7.3800 0.6621 38 1 6.2810 -5.8961 1.2890 39 1 6.1741 -6.2847 -1.3756 40 1 5.8025 -4.6587 -0.7216 41 1 3.9327 -6.7510 -1.8275 42 1 3.7817 -4.9714 -1.8544 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:15 Heat of formation + Delta-G solvation = 83.753209 kcal Electronic energy + Delta-G solvation = -24923.503494 eV Core-core repulsion = 21609.428114 eV Total energy + Delta-G solvation = -3314.075381 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.74931 -38.41058 -36.46959 -34.86161 -32.57000 -32.20770 -30.46926 -28.49834 -28.27413 -27.74605 -26.17893 -24.35021 -23.40313 -21.34206 -20.53734 -20.24156 -18.90088 -17.83922 -17.08975 -16.85816 -16.17766 -15.51467 -14.98494 -14.86689 -14.42791 -14.15501 -13.80843 -13.71234 -13.38751 -13.25513 -12.74530 -12.69836 -12.45547 -12.10001 -11.90815 -11.72009 -11.34582 -11.23074 -11.04765 -10.76580 -10.68354 -10.67486 -10.62751 -10.47365 -10.41718 -10.11854 -10.09080 -9.99275 -9.51803 -9.00246 -8.62446 -8.52538 -8.05553 -6.86638 -6.07972 -4.05907 0.73241 1.52456 1.66916 2.07276 2.50524 3.27033 3.32009 3.34934 3.43196 4.35114 4.38769 4.39851 4.70241 4.86574 5.01940 5.06463 5.20419 5.25308 5.33966 5.38577 5.55069 5.64520 5.78930 5.85432 5.94220 5.94582 5.98679 6.02907 6.04615 6.12537 6.24797 6.29950 6.42119 6.51922 6.58948 6.64417 6.69131 6.77150 6.80883 6.95721 7.31292 7.59603 7.64772 8.15280 8.49501 8.86354 8.98301 9.52033 11.05509 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.009490 B = 0.006613 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.654170 B = 4233.211482 C = 6581.704080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.087 4.087 3 C -0.167 4.167 4 S 0.088 5.912 5 C -0.326 4.326 6 C 0.235 3.765 7 N -0.539 5.539 8 C 0.579 3.421 9 N -0.552 5.552 10 C 0.227 3.773 11 C -0.521 4.521 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.898 5.898 15 Si 0.873 3.127 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.164 3.836 20 C -0.130 4.130 21 C -0.114 4.114 22 C -0.111 4.111 23 C -0.120 4.120 24 N -0.527 5.527 25 C 0.223 3.777 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.171 0.829 30 H 0.163 0.837 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.191 8.338 8.099 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.305 4.305 4 S 0.347 5.653 5 C -0.449 4.449 6 C 0.055 3.945 7 N -0.260 5.260 8 C 0.222 3.778 9 N -0.264 5.264 10 C 0.106 3.894 11 C -0.560 4.560 12 H 0.091 0.909 13 C -0.128 4.128 14 N -0.537 5.537 15 Si 0.700 3.300 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.192 1.192 19 C 0.059 3.941 20 C -0.169 4.169 21 C -0.152 4.152 22 C -0.149 4.149 23 C -0.159 4.159 24 N -0.251 5.251 25 C 0.076 3.924 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.188 0.812 30 H 0.180 0.820 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.747 7.932 7.986 17.005 hybrid contribution -1.773 -0.075 0.401 1.820 sum 10.974 7.857 8.387 15.890 Atomic orbital electron populations 1.20501 0.88750 1.02838 1.02998 1.18425 0.98058 0.89803 1.03782 1.25129 0.96463 1.01855 1.07028 1.83694 1.04695 0.97201 1.79711 1.23774 0.99763 0.99366 1.22022 1.22277 0.98970 0.85194 0.88050 1.68328 1.14057 1.22576 1.21043 1.19058 0.83712 0.87071 0.87992 1.46776 1.07716 0.99063 1.72827 1.19756 0.74756 0.96465 0.98423 1.21305 0.94361 1.49147 0.91152 0.90883 1.24815 0.97880 0.94754 0.95393 1.69895 1.15470 1.49704 1.18589 0.86904 0.81372 0.78626 0.83082 1.19899 1.21164 1.19152 1.21582 0.89561 0.88460 0.94458 1.22774 0.94940 1.02087 0.97091 1.22326 0.96714 0.99398 0.96739 1.22255 0.96118 1.01326 0.95223 1.22381 0.94521 1.01735 0.97241 1.68060 1.37502 0.97083 1.22466 1.18765 0.88951 0.91633 0.93035 0.90767 0.91891 0.90346 0.81156 0.81967 0.95312 0.94078 0.92646 0.89136 0.90238 0.92592 0.92280 0.92237 0.93125 0.90636 0.92169 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 10.09 36.01 0.36 -0.98 16 2 C -0.09 -1.36 5.81 -105.75 -0.61 -1.97 16 3 C -0.17 -2.07 10.81 28.81 0.31 -1.76 16 4 S 0.09 1.07 23.29 -107.50 -2.50 -1.43 16 5 C -0.33 -5.17 6.53 -38.43 -0.25 -5.42 16 6 C 0.24 3.55 11.33 -17.00 -0.19 3.36 16 7 N -0.54 -9.46 4.91 -13.84 -0.07 -9.53 16 8 C 0.58 12.05 7.06 -323.23 -2.28 9.77 16 9 N -0.55 -11.80 2.49 -168.62 -0.42 -12.22 16 10 C 0.23 5.49 4.21 -5.20 -0.02 5.47 16 11 C -0.52 -14.72 9.94 -34.44 -0.34 -15.06 16 12 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 13 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 15 Si 0.87 21.25 27.47 -169.99 -4.67 16.58 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 19 C 0.16 2.95 3.36 -66.81 -0.22 2.72 16 20 C -0.13 -1.96 6.03 -25.07 -0.15 -2.12 16 21 C -0.11 -1.45 6.91 -24.74 -0.17 -1.62 16 22 C -0.11 -1.54 6.33 -25.07 -0.16 -1.70 16 23 C -0.12 -2.06 5.77 -25.61 -0.15 -2.20 16 24 N -0.53 -11.48 9.12 -12.20 -0.11 -11.59 16 25 C 0.22 4.14 6.83 -84.96 -0.58 3.56 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 28 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 29 H 0.17 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.03 0.68 6.98 -51.93 -0.36 0.32 16 32 H 0.04 1.03 6.75 -51.93 -0.35 0.68 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.09 1.63 7.82 -51.93 -0.41 1.22 16 35 H 0.08 1.31 5.92 -51.93 -0.31 1.00 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.07 6.94 -51.93 -0.36 0.71 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.35 7.13 -51.93 -0.37 0.98 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -31.72 347.58 -12.29 -44.01 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.97 Total: 1.53 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -4.56 Total: -5.94 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.17 Total: -60.00 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.50 Total: -1.43 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.72 -12.29 -44.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.767 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds