Wall clock time and date at job start Tue Mar 31 2020 11:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32351 * 122.10272 * 2 1 4 4 S 1.75557 * 110.82988 * 179.97438 * 3 2 1 5 5 C 1.75773 * 91.50436 * 359.97438 * 4 3 2 6 6 C 1.39475 * 131.57345 * 179.97438 * 5 4 3 7 7 N 1.32039 * 119.16227 * 179.97438 * 6 5 4 8 8 C 1.32771 * 120.85147 * 0.02562 * 7 6 5 9 9 N 1.38642 * 118.86416 * 179.97438 * 8 7 6 10 10 C 1.46503 * 119.99847 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47164 * 90.00345 * 10 9 8 12 12 H 1.08003 * 120.00021 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00175 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00046 * 180.02562 * 13 11 10 15 15 Si 1.86790 * 119.99835 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47303 * 90.00210 * 15 13 11 17 17 H 1.48500 * 109.47310 * 210.00131 * 15 13 11 18 18 H 1.48503 * 109.47322 * 330.00273 * 15 13 11 19 19 C 1.46492 * 120.00282 * 0.02562 * 9 8 7 20 20 C 1.54263 * 110.03227 * 57.16335 * 19 9 8 21 21 C 1.54893 * 104.19625 * 217.10818 * 20 19 9 22 22 C 1.54889 * 102.74942 * 37.94077 * 21 20 19 23 23 C 1.53881 * 110.03265 * 299.99745 * 19 9 8 24 24 N 1.31612 * 122.26962 * 0.02562 * 8 7 6 25 25 C 1.35047 * 120.88219 * 359.68547 * 24 8 7 26 26 H 1.09002 * 109.47152 * 90.02440 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02540 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02521 * 1 2 3 29 29 H 1.08007 * 124.58557 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.41667 * 359.97438 * 6 5 4 31 31 H 1.08998 * 109.46903 * 210.00511 * 10 9 8 32 32 H 1.09006 * 109.47198 * 330.00180 * 10 9 8 33 33 H 0.96995 * 120.00123 * 179.97438 * 14 13 11 34 34 H 1.09001 * 110.01829 * 178.60607 * 19 9 8 35 35 H 1.08997 * 110.48825 * 335.78210 * 20 19 9 36 36 H 1.09003 * 110.48834 * 98.43042 * 20 19 9 37 37 H 1.09005 * 110.75605 * 279.62623 * 21 20 19 38 38 H 1.09001 * 110.91373 * 156.33303 * 21 20 19 39 39 H 1.09001 * 110.48343 * 203.37892 * 22 21 20 40 40 H 1.08996 * 110.48417 * 80.74146 * 22 21 20 41 41 H 1.09003 * 110.03088 * 238.56969 * 23 19 9 42 42 H 1.08997 * 110.03169 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2104 1.1211 0.0000 4 16 3.9321 0.7780 0.0007 5 6 3.6339 -0.9543 0.0018 6 6 4.5051 -2.0434 0.0023 7 7 4.0067 -3.2661 0.0037 8 6 2.6941 -3.4663 0.0040 9 7 2.2156 -4.7675 0.0048 10 6 0.7719 -5.0170 0.0047 11 6 0.2774 -5.1037 -1.4162 12 1 0.9691 -4.9845 -2.2370 13 6 -1.0584 -5.3343 -1.6683 14 7 -1.4900 -5.4105 -2.9083 15 14 -2.2549 -5.5399 -0.2487 16 1 -2.8101 -4.2146 0.1267 17 1 -3.3610 -6.4413 -0.6601 18 1 -1.5450 -6.1271 0.9160 19 6 3.1534 -5.8929 0.0060 20 6 4.0951 -5.7948 1.2239 21 6 5.4613 -6.2907 0.6885 22 6 5.4996 -5.7054 -0.7450 23 6 4.0464 -5.8361 -1.2459 24 7 1.8317 -2.4721 0.0025 25 6 2.2530 -1.1890 0.0070 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5142 29 1 1.7830 2.1130 -0.0004 30 1 5.5740 -1.8886 0.0017 31 1 0.5654 -5.9554 0.5192 32 1 0.2622 -4.2015 0.5177 33 1 -2.4296 -5.5730 -3.0857 34 1 2.6057 -6.8350 0.0314 35 1 4.1711 -4.7625 1.5652 36 1 3.7446 -6.4393 2.0300 37 1 5.4935 -7.3800 0.6621 38 1 6.2810 -5.8961 1.2890 39 1 6.1741 -6.2847 -1.3756 40 1 5.8025 -4.6587 -0.7216 41 1 3.9327 -6.7510 -1.8275 42 1 3.7817 -4.9714 -1.8544 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:14 Heat of formation + Delta-G solvation = 67.614506 kcal Electronic energy + Delta-G solvation = -24924.203321 eV Core-core repulsion = 21609.428114 eV Total energy + Delta-G solvation = -3314.775207 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07508 -39.72490 -37.66025 -36.40494 -34.57776 -33.63971 -31.84613 -30.21337 -29.51369 -28.90720 -27.68093 -25.61057 -25.02310 -23.06954 -21.76613 -21.39605 -20.19466 -19.07942 -19.00659 -18.42674 -17.58696 -16.86999 -16.38815 -16.25714 -16.05471 -15.54225 -15.17659 -14.95080 -14.66853 -14.48983 -14.44762 -13.99628 -13.91162 -13.68508 -13.57883 -13.01644 -12.85862 -12.53814 -12.44630 -12.29966 -12.14646 -11.98875 -11.89946 -11.82903 -11.78959 -11.70854 -11.67387 -11.40485 -11.18465 -10.81870 -10.28856 -9.94442 -9.28789 -8.33418 -8.23606 -6.36227 -0.46338 0.21399 0.57807 0.94274 1.29421 1.31005 1.34020 1.43036 1.95126 2.30255 2.97560 3.01429 3.17268 3.52969 3.59740 3.80693 3.85227 4.00427 4.12922 4.29325 4.42188 4.52960 4.57779 4.58765 4.64762 4.72690 4.76440 4.79013 4.85579 4.90286 4.97238 5.01914 5.12556 5.18310 5.27339 5.33473 5.37815 5.40928 5.42118 5.48021 5.67532 5.90624 6.05429 6.32805 6.62147 6.68778 7.24601 7.48586 8.84831 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.009490 B = 0.006613 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.654170 B = 4233.211482 C = 6581.704080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.132 4.132 3 C -0.141 4.141 4 S 0.173 5.827 5 C -0.344 4.344 6 C 0.236 3.764 7 N -0.538 5.538 8 C 0.562 3.438 9 N -0.570 5.570 10 C 0.243 3.757 11 C -0.520 4.520 12 H 0.018 0.982 13 C 0.014 3.986 14 N -0.947 5.947 15 Si 0.946 3.054 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.244 1.244 19 C 0.154 3.846 20 C -0.120 4.120 21 C -0.102 4.102 22 C -0.102 4.102 23 C -0.117 4.117 24 N -0.580 5.580 25 C 0.188 3.812 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.043 0.957 29 H 0.214 0.786 30 H 0.209 0.791 31 H 0.039 0.961 32 H 0.030 0.970 33 H 0.267 0.733 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.437 10.210 10.381 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.145 4.145 3 C -0.279 4.279 4 S 0.433 5.567 5 C -0.466 4.466 6 C 0.056 3.944 7 N -0.259 5.259 8 C 0.204 3.796 9 N -0.283 5.283 10 C 0.121 3.879 11 C -0.559 4.559 12 H 0.037 0.963 13 C -0.183 4.183 14 N -0.588 5.588 15 Si 0.769 3.231 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.168 1.168 19 C 0.051 3.949 20 C -0.159 4.159 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.156 4.156 24 N -0.305 5.305 25 C 0.044 3.956 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.063 0.937 29 H 0.230 0.770 30 H 0.226 0.774 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 15.055 9.856 10.279 20.724 hybrid contribution -2.322 -0.401 -0.425 2.394 sum 12.734 9.455 9.854 18.672 Atomic orbital electron populations 1.20410 0.88907 1.02933 1.02125 1.18562 0.98503 0.89972 1.07511 1.25704 0.96962 1.02603 1.02624 1.83433 1.03345 0.92742 1.77172 1.24226 0.98951 1.02499 1.20915 1.23100 1.00878 0.84291 0.86091 1.68360 1.12226 1.23948 1.21349 1.19197 0.84951 0.86646 0.88777 1.46661 1.06730 1.00458 1.74467 1.19315 0.77164 0.96162 0.95297 1.21432 0.93807 1.48639 0.91997 0.96326 1.25768 0.99909 0.94247 0.98411 1.70058 1.16152 1.51336 1.21241 0.85748 0.78665 0.78889 0.79839 1.19511 1.20230 1.16766 1.21826 0.89606 0.87181 0.96326 1.22681 0.95596 1.01717 0.95915 1.22301 0.95709 1.00312 0.95606 1.22196 0.93599 1.01763 0.96380 1.22327 0.97109 0.99606 0.96560 1.67936 1.39204 0.98845 1.24552 1.19320 0.90978 0.91341 0.93958 0.92205 0.88207 0.93747 0.76971 0.77418 0.94355 0.95183 0.92409 0.90079 0.91500 0.91484 0.90729 0.89974 0.91231 0.90838 0.92567 0.95517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.53 10.09 71.24 0.72 -1.82 16 2 C -0.13 -4.06 5.81 -20.43 -0.12 -4.18 16 3 C -0.14 -3.02 10.81 66.73 0.72 -2.29 16 4 S 0.17 3.53 23.29 -56.49 -1.32 2.21 16 5 C -0.34 -10.43 6.53 23.01 0.15 -10.28 16 6 C 0.24 6.78 11.33 84.96 0.96 7.74 16 7 N -0.54 -19.07 4.91 -197.69 -0.97 -20.04 16 8 C 0.56 24.57 7.06 261.63 1.85 26.42 16 9 N -0.57 -25.77 2.49 -687.39 -1.71 -27.48 16 10 C 0.24 12.41 4.21 85.63 0.36 12.77 16 11 C -0.52 -31.46 9.94 25.60 0.25 -31.21 16 12 H 0.02 1.28 8.06 -2.91 -0.02 1.26 16 13 C 0.01 0.85 5.47 84.66 0.46 1.32 16 14 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 15 Si 0.95 45.28 27.47 68.60 1.88 47.16 16 16 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.24 -10.72 6.54 99.48 0.65 -10.07 16 19 C 0.15 5.76 3.36 45.72 0.15 5.91 16 20 C -0.12 -3.54 6.03 31.67 0.19 -3.34 16 21 C -0.10 -2.32 6.91 31.89 0.22 -2.10 16 22 C -0.10 -2.68 6.33 31.67 0.20 -2.48 16 23 C -0.12 -4.19 5.77 31.32 0.18 -4.01 16 24 N -0.58 -26.76 9.12 -192.50 -1.75 -28.52 16 25 C 0.19 7.14 6.83 39.61 0.27 7.41 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.10 2.11 8.11 -2.39 -0.02 2.09 16 28 H 0.04 1.59 8.13 -2.38 -0.02 1.57 16 29 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.21 3.83 8.06 -2.91 -0.02 3.81 16 31 H 0.04 1.86 6.98 -2.39 -0.02 1.84 16 32 H 0.03 1.59 6.75 -2.38 -0.02 1.58 16 33 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 34 H 0.08 3.06 7.82 -2.39 -0.02 3.04 16 35 H 0.07 2.16 5.92 -2.39 -0.01 2.15 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.97 6.94 -2.39 -0.02 1.95 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.03 1.15 7.13 -2.39 -0.02 1.13 16 Total: -1.00 -77.16 347.58 3.98 -73.18 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.97 Total: 14.29 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 6.58 Total: -0.14 kcal Atomic # 7 Polarization: -132.57 SS G_CDS: -4.14 Total: -136.71 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.32 Total: 2.21 kcal Total: -77.16 3.98 -73.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.798 kcal (2) G-P(sol) polarization free energy of solvation -77.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds