Wall clock time and date at job start Tue Mar 31 2020 11:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31883 * 122.59249 * 2 1 4 4 S 1.75356 * 111.38698 * 180.24569 * 3 2 1 5 5 C 1.75754 * 92.18329 * 359.64428 * 4 3 2 6 6 N 1.33922 * 131.27744 * 180.02562 * 5 4 3 7 7 C 1.31263 * 121.04360 * 180.31838 * 6 5 4 8 8 N 1.32107 * 122.17798 * 0.03582 * 7 6 5 9 9 C 1.32453 * 121.19301 * 359.97438 * 8 7 6 10 10 N 1.38325 * 120.53167 * 179.97438 * 9 8 7 11 11 C 1.46900 * 110.99891 * 58.91933 * 10 9 8 12 12 C 1.50698 * 109.47512 * 75.55411 * 11 10 9 13 13 H 1.08000 * 119.99904 * 4.61342 * 12 11 10 14 14 C 1.37881 * 119.99782 * 184.61584 * 12 11 10 15 15 N 1.31509 * 120.00257 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99486 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47193 * 90.00101 * 16 14 12 18 18 H 1.48500 * 109.46833 * 209.99527 * 16 14 12 19 19 H 1.48499 * 109.47288 * 329.99872 * 16 14 12 20 20 C 1.46896 * 111.00015 * 294.95986 * 10 9 8 21 21 C 1.54265 * 110.03448 * 306.85825 * 20 10 9 22 22 C 1.54891 * 104.19257 * 217.10644 * 21 20 10 23 23 C 1.54888 * 102.75206 * 37.93720 * 22 21 20 24 24 C 1.53873 * 110.03384 * 189.68387 * 20 10 9 25 25 C 1.39731 * 109.61519 * 0.34843 * 5 4 3 26 26 H 1.08997 * 109.47242 * 93.47192 * 1 2 3 27 27 H 1.09009 * 109.47305 * 213.47052 * 1 2 3 28 28 H 1.09000 * 109.47540 * 333.46681 * 1 2 3 29 29 H 1.07999 * 124.30770 * 359.97438 * 3 2 1 30 30 H 1.07994 * 118.91165 * 180.02562 * 7 6 5 31 31 H 1.09005 * 109.46986 * 195.55872 * 11 10 9 32 32 H 1.09000 * 109.47091 * 315.55087 * 11 10 9 33 33 H 0.96996 * 120.00225 * 180.02562 * 15 14 12 34 34 H 1.09006 * 110.01206 * 68.29860 * 20 10 9 35 35 H 1.09007 * 110.48291 * 335.77763 * 21 20 10 36 36 H 1.08994 * 110.48663 * 98.42570 * 21 20 10 37 37 H 1.09005 * 110.75212 * 279.62017 * 22 21 20 38 38 H 1.09004 * 110.91358 * 156.33282 * 22 21 20 39 39 H 1.08996 * 110.48764 * 203.37959 * 23 22 21 40 40 H 1.09003 * 110.48017 * 80.73721 * 23 22 21 41 41 H 1.08993 * 110.03883 * 238.57117 * 24 20 10 42 42 H 1.08998 * 110.02986 * 359.95723 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1111 0.0000 4 16 3.9375 0.7704 -0.0070 5 6 3.6619 -0.9654 0.0009 6 7 4.5174 -1.9958 0.0011 7 6 4.0845 -3.2350 0.0015 8 7 2.7969 -3.5304 0.0010 9 6 1.8749 -2.5795 0.0006 10 7 0.5304 -2.9044 -0.0004 11 6 0.1841 -3.7165 1.1737 12 6 0.1254 -2.8351 2.3946 13 1 0.2515 -1.7670 2.2962 14 6 -0.0893 -3.3923 3.6374 15 7 -0.2434 -4.6928 3.7573 16 14 -0.1614 -2.2997 5.1509 17 1 -1.5620 -1.8625 5.3795 18 1 0.3192 -3.0593 6.3330 19 1 0.7013 -1.1090 4.9434 20 6 0.1555 -3.5902 -1.2441 21 6 0.5940 -2.7521 -2.4627 22 6 -0.5468 -2.9517 -3.4913 23 6 -1.8130 -2.9641 -2.5994 24 6 -1.3749 -3.7251 -1.3310 25 6 2.2885 -1.2223 0.0005 26 1 -0.3633 -0.0622 -1.0257 27 1 -0.3634 -0.8573 0.5668 28 1 -0.3634 0.9194 0.4591 29 1 1.7937 2.1045 -0.0004 30 1 4.8048 -4.0396 0.0021 31 1 -0.7872 -4.1858 1.0172 32 1 0.9410 -4.4875 1.3182 33 1 -0.3948 -5.0848 4.6315 34 1 0.6198 -4.5757 -1.2813 35 1 0.6823 -1.7003 -2.1904 36 1 1.5373 -3.1243 -2.8622 37 1 -0.4334 -3.9012 -4.0144 38 1 -0.5812 -2.1239 -4.1997 39 1 -2.6261 -3.4910 -3.0986 40 1 -2.1133 -1.9466 -2.3492 41 1 -1.6532 -4.7759 -1.4113 42 1 -1.8393 -3.2824 -0.4500 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:08 Heat of formation + Delta-G solvation = 68.411069 kcal Electronic energy + Delta-G solvation = -25498.962794 eV Core-core repulsion = 22184.222128 eV Total energy + Delta-G solvation = -3314.740666 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87564 -38.43145 -36.42332 -35.39953 -32.86288 -31.91360 -30.09682 -28.65328 -27.92473 -27.48637 -25.92966 -24.19138 -23.42960 -21.78456 -20.38206 -19.67047 -19.25669 -18.16981 -17.12377 -16.29448 -16.05484 -15.56242 -15.31000 -14.74940 -14.47258 -14.44604 -13.80166 -13.61511 -13.33731 -13.16212 -12.87555 -12.60670 -12.30719 -11.83703 -11.66214 -11.48429 -11.31167 -10.98049 -10.93512 -10.92558 -10.79094 -10.68658 -10.64026 -10.57001 -10.47761 -10.31618 -10.17892 -9.80455 -9.38241 -8.89474 -8.61243 -8.50840 -7.81924 -7.66936 -6.10987 -4.13439 0.80149 1.32619 1.42482 2.11715 2.50171 3.26304 3.33221 3.37053 4.07657 4.11399 4.39754 4.53829 4.80263 4.85371 4.87208 4.91160 5.10769 5.24465 5.27100 5.50259 5.68802 5.71737 5.75234 5.78613 5.85113 5.87117 5.97504 6.06631 6.09338 6.15559 6.25709 6.28616 6.39667 6.46945 6.50549 6.55924 6.68839 6.99856 7.05290 7.21291 7.36368 7.63989 7.95008 7.98726 8.28638 8.46101 8.93293 9.51197 10.99050 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.007458 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.202672 B = 3753.375537 C = 5235.410678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.027 4.027 3 C -0.231 4.231 4 S 0.122 5.878 5 C 0.093 3.907 6 N -0.513 5.513 7 C 0.322 3.678 8 N -0.553 5.553 9 C 0.455 3.545 10 N -0.486 5.486 11 C 0.192 3.808 12 C -0.515 4.515 13 H 0.064 0.936 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.893 3.107 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.090 3.910 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.154 4.154 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.056 0.944 29 H 0.170 0.830 30 H 0.195 0.805 31 H 0.042 0.958 32 H 0.020 0.980 33 H 0.262 0.738 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 7.276 -12.235 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.039 4.039 3 C -0.364 4.364 4 S 0.380 5.620 5 C -0.158 4.158 6 N -0.231 5.231 7 C 0.028 3.972 8 N -0.272 5.272 9 C 0.210 3.790 10 N -0.211 5.211 11 C 0.069 3.931 12 C -0.553 4.553 13 H 0.082 0.918 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.720 3.280 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.018 4.018 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.170 4.170 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.075 0.925 29 H 0.188 0.812 30 H 0.211 0.789 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.221 7.788 -12.063 14.715 hybrid contribution -1.176 -0.541 1.135 1.722 sum 2.045 7.247 -10.927 13.271 Atomic orbital electron populations 1.20823 0.88376 1.04469 1.02769 1.19496 0.97881 0.89308 0.97177 1.24876 0.95702 1.02336 1.13497 1.83873 1.05307 0.94015 1.78831 1.23763 0.92005 0.99497 1.00546 1.67987 1.38158 0.99216 1.17726 1.24638 0.90756 0.91629 0.90132 1.68503 1.03060 1.38432 1.17157 1.20019 0.90305 0.86689 0.81971 1.60528 1.08467 1.47278 1.04825 1.20003 0.97136 0.91825 0.84170 1.21134 1.49489 0.94015 0.90699 0.91780 1.24920 0.95263 0.94954 0.98922 1.69941 1.48910 1.09978 1.24241 0.86574 0.78409 0.80570 0.82430 1.20398 1.21223 1.19874 1.22259 0.96037 0.95525 0.87956 1.22552 0.97706 1.00998 0.95072 1.22416 0.95129 1.01070 0.97125 1.22313 0.96883 1.00657 0.95762 1.22194 0.94190 1.00099 0.98852 1.20333 0.93005 0.95220 1.08397 0.91439 0.86863 0.92481 0.81246 0.78855 0.94015 0.96193 0.92797 0.93069 0.90672 0.92800 0.91872 0.91952 0.92138 0.91497 0.91988 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.49 36.01 0.34 -1.28 16 2 C -0.03 -0.44 5.93 -103.82 -0.62 -1.06 16 3 C -0.23 -3.28 10.75 28.83 0.31 -2.97 16 4 S 0.12 1.80 23.23 -107.50 -2.50 -0.70 16 5 C 0.09 1.72 7.69 -16.08 -0.12 1.60 16 6 N -0.51 -9.56 10.47 -13.32 -0.14 -9.70 16 7 C 0.32 5.81 12.27 -92.34 -1.13 4.67 16 8 N -0.55 -11.31 9.54 -13.43 -0.13 -11.44 16 9 C 0.46 9.30 3.82 -154.57 -0.59 8.71 16 10 N -0.49 -9.74 2.07 -165.02 -0.34 -10.08 16 11 C 0.19 4.69 4.44 -4.98 -0.02 4.67 16 12 C -0.51 -13.78 8.70 -34.44 -0.30 -14.08 16 13 H 0.06 1.71 6.61 -52.49 -0.35 1.37 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 16 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.09 1.54 2.52 -66.60 -0.17 1.37 16 21 C -0.13 -1.85 5.51 -25.07 -0.14 -1.99 16 22 C -0.12 -1.43 6.91 -24.74 -0.17 -1.60 16 23 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 24 C -0.12 -1.76 5.69 -25.61 -0.15 -1.91 16 25 C -0.15 -2.96 5.61 -105.24 -0.59 -3.55 16 26 H 0.07 0.92 7.66 -51.93 -0.40 0.52 16 27 H 0.11 2.11 5.08 -51.92 -0.26 1.84 16 28 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.19 2.71 8.06 -52.49 -0.42 2.29 16 31 H 0.04 1.05 6.46 -51.93 -0.34 0.72 16 32 H 0.02 0.55 7.43 -51.93 -0.39 0.17 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.17 6.72 -51.92 -0.35 0.82 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.49 7.00 -51.93 -0.36 1.13 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -29.89 347.55 -11.57 -41.46 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.80 Total: 1.25 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.61 Total: -7.43 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.13 Total: -56.26 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.50 Total: -0.70 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.89 -11.57 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.874 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds