Wall clock time and date at job start Tue Mar 31 2020 11:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31883 * 122.59249 * 2 1 4 4 S 1.75356 * 111.38698 * 180.24569 * 3 2 1 5 5 C 1.75754 * 92.18329 * 359.64428 * 4 3 2 6 6 N 1.33922 * 131.27744 * 180.02562 * 5 4 3 7 7 C 1.31263 * 121.04360 * 180.31838 * 6 5 4 8 8 N 1.32107 * 122.17798 * 0.03582 * 7 6 5 9 9 C 1.32453 * 121.19301 * 359.97438 * 8 7 6 10 10 N 1.38325 * 120.53167 * 179.97438 * 9 8 7 11 11 C 1.46900 * 110.99891 * 58.91933 * 10 9 8 12 12 C 1.50698 * 109.47512 * 75.55411 * 11 10 9 13 13 H 1.08000 * 119.99904 * 4.61342 * 12 11 10 14 14 C 1.37881 * 119.99782 * 184.61584 * 12 11 10 15 15 N 1.31509 * 120.00257 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99486 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47193 * 90.00101 * 16 14 12 18 18 H 1.48500 * 109.46833 * 209.99527 * 16 14 12 19 19 H 1.48499 * 109.47288 * 329.99872 * 16 14 12 20 20 C 1.46896 * 111.00015 * 294.95986 * 10 9 8 21 21 C 1.54265 * 110.03448 * 306.85825 * 20 10 9 22 22 C 1.54891 * 104.19257 * 217.10644 * 21 20 10 23 23 C 1.54888 * 102.75206 * 37.93720 * 22 21 20 24 24 C 1.53873 * 110.03384 * 189.68387 * 20 10 9 25 25 C 1.39731 * 109.61519 * 0.34843 * 5 4 3 26 26 H 1.08997 * 109.47242 * 93.47192 * 1 2 3 27 27 H 1.09009 * 109.47305 * 213.47052 * 1 2 3 28 28 H 1.09000 * 109.47540 * 333.46681 * 1 2 3 29 29 H 1.07999 * 124.30770 * 359.97438 * 3 2 1 30 30 H 1.07994 * 118.91165 * 180.02562 * 7 6 5 31 31 H 1.09005 * 109.46986 * 195.55872 * 11 10 9 32 32 H 1.09000 * 109.47091 * 315.55087 * 11 10 9 33 33 H 0.96996 * 120.00225 * 180.02562 * 15 14 12 34 34 H 1.09006 * 110.01206 * 68.29860 * 20 10 9 35 35 H 1.09007 * 110.48291 * 335.77763 * 21 20 10 36 36 H 1.08994 * 110.48663 * 98.42570 * 21 20 10 37 37 H 1.09005 * 110.75212 * 279.62017 * 22 21 20 38 38 H 1.09004 * 110.91358 * 156.33282 * 22 21 20 39 39 H 1.08996 * 110.48764 * 203.37959 * 23 22 21 40 40 H 1.09003 * 110.48017 * 80.73721 * 23 22 21 41 41 H 1.08993 * 110.03883 * 238.57117 * 24 20 10 42 42 H 1.08998 * 110.02986 * 359.95723 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1111 0.0000 4 16 3.9375 0.7704 -0.0070 5 6 3.6619 -0.9654 0.0009 6 7 4.5174 -1.9958 0.0011 7 6 4.0845 -3.2350 0.0015 8 7 2.7969 -3.5304 0.0010 9 6 1.8749 -2.5795 0.0006 10 7 0.5304 -2.9044 -0.0004 11 6 0.1841 -3.7165 1.1737 12 6 0.1254 -2.8351 2.3946 13 1 0.2515 -1.7670 2.2962 14 6 -0.0893 -3.3923 3.6374 15 7 -0.2434 -4.6928 3.7573 16 14 -0.1614 -2.2997 5.1509 17 1 -1.5620 -1.8625 5.3795 18 1 0.3192 -3.0593 6.3330 19 1 0.7013 -1.1090 4.9434 20 6 0.1555 -3.5902 -1.2441 21 6 0.5940 -2.7521 -2.4627 22 6 -0.5468 -2.9517 -3.4913 23 6 -1.8130 -2.9641 -2.5994 24 6 -1.3749 -3.7251 -1.3310 25 6 2.2885 -1.2223 0.0005 26 1 -0.3633 -0.0622 -1.0257 27 1 -0.3634 -0.8573 0.5668 28 1 -0.3634 0.9194 0.4591 29 1 1.7937 2.1045 -0.0004 30 1 4.8048 -4.0396 0.0021 31 1 -0.7872 -4.1858 1.0172 32 1 0.9410 -4.4875 1.3182 33 1 -0.3948 -5.0848 4.6315 34 1 0.6198 -4.5757 -1.2813 35 1 0.6823 -1.7003 -2.1904 36 1 1.5373 -3.1243 -2.8622 37 1 -0.4334 -3.9012 -4.0144 38 1 -0.5812 -2.1239 -4.1997 39 1 -2.6261 -3.4910 -3.0986 40 1 -2.1133 -1.9466 -2.3492 41 1 -1.6532 -4.7759 -1.4113 42 1 -1.8393 -3.2824 -0.4500 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:07 Heat of formation + Delta-G solvation = 53.555011 kcal Electronic energy + Delta-G solvation = -25499.607001 eV Core-core repulsion = 22184.222128 eV Total energy + Delta-G solvation = -3315.384873 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.29777 -39.78926 -37.70788 -36.80426 -34.82910 -33.45798 -31.47943 -29.98675 -29.39484 -28.81149 -27.44400 -25.61046 -25.06723 -23.44996 -21.53140 -20.93012 -20.57491 -19.54686 -18.77635 -18.09153 -17.45767 -17.03730 -16.60051 -16.48807 -15.88374 -15.78393 -15.26529 -14.99398 -14.56183 -14.43462 -14.32236 -14.06244 -13.78238 -13.42924 -13.24438 -12.94486 -12.77695 -12.65625 -12.48494 -12.34185 -12.06916 -12.02730 -11.94701 -11.88188 -11.82150 -11.81115 -11.45327 -11.35590 -11.24811 -10.63804 -10.34047 -9.93803 -9.44318 -8.93930 -8.23125 -6.31966 -0.55392 -0.14740 0.15169 0.89926 1.22871 1.35221 1.36343 1.46114 2.33344 2.61154 2.70411 3.10582 3.21956 3.41314 3.60536 3.64190 3.73623 3.83413 4.06510 4.24137 4.44880 4.51844 4.56767 4.58065 4.71574 4.74370 4.80063 4.89794 4.96194 4.99896 5.01890 5.08444 5.12594 5.20544 5.26262 5.28670 5.31511 5.39122 5.50888 5.58708 5.79345 5.86818 5.98075 6.23480 6.44073 6.81702 7.02584 7.36502 8.87273 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.007458 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.202672 B = 3753.375537 C = 5235.410678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.058 4.058 3 C -0.206 4.206 4 S 0.176 5.824 5 C 0.059 3.941 6 N -0.517 5.517 7 C 0.310 3.690 8 N -0.582 5.582 9 C 0.431 3.569 10 N -0.473 5.473 11 C 0.213 3.787 12 C -0.517 4.517 13 H 0.063 0.937 14 C 0.009 3.991 15 N -0.928 5.928 16 Si 0.955 3.045 17 H -0.264 1.264 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.084 3.916 21 C -0.115 4.115 22 C -0.109 4.109 23 C -0.109 4.109 24 C -0.114 4.114 25 C -0.168 4.168 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.212 0.788 30 H 0.225 0.775 31 H 0.026 0.974 32 H -0.022 1.022 33 H 0.263 0.737 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 10.405 -13.284 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.070 4.070 3 C -0.339 4.339 4 S 0.435 5.565 5 C -0.192 4.192 6 N -0.234 5.234 7 C 0.017 3.983 8 N -0.302 5.302 9 C 0.187 3.813 10 N -0.197 5.197 11 C 0.088 3.912 12 C -0.556 4.556 13 H 0.081 0.919 14 C -0.190 4.190 15 N -0.568 5.568 16 Si 0.780 3.220 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.024 4.024 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.146 4.146 24 C -0.152 4.152 25 C -0.183 4.183 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.229 0.771 30 H 0.241 0.759 31 H 0.044 0.956 32 H -0.004 1.004 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.015 10.938 -13.136 17.358 hybrid contribution -1.012 -1.455 1.419 2.270 sum 2.003 9.484 -11.717 15.206 Atomic orbital electron populations 1.20713 0.87698 1.03934 1.03284 1.19623 0.98572 0.88993 0.99792 1.25404 0.95376 1.03374 1.09788 1.83710 1.05279 0.90288 1.77247 1.24420 0.92157 1.01594 1.00992 1.68073 1.38214 0.99467 1.17688 1.25237 0.90548 0.92617 0.89882 1.68470 1.04209 1.39351 1.18124 1.20199 0.90149 0.87667 0.83320 1.60471 1.09000 1.45983 1.04239 1.19516 0.94858 0.90947 0.85877 1.21398 1.48491 0.94124 0.91580 0.91872 1.25752 0.95113 0.96165 1.01948 1.70069 1.50247 1.11646 1.24870 0.85589 0.78994 0.78681 0.78698 1.18886 1.21219 1.19663 1.22421 0.97249 0.94669 0.88020 1.22449 0.98488 0.99844 0.94549 1.22408 0.93171 1.02574 0.96549 1.22279 0.97650 1.00724 0.93953 1.22170 0.92601 1.00579 0.99859 1.20611 0.93977 0.95449 1.08276 0.90051 0.90555 0.90128 0.77148 0.75884 0.95556 1.00427 0.92791 0.95680 0.91163 0.93752 0.90975 0.89517 0.89881 0.90814 0.91989 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.84 9.49 71.24 0.68 -2.16 16 2 C -0.06 -1.83 5.93 -18.94 -0.11 -1.94 16 3 C -0.21 -5.10 10.75 66.99 0.72 -4.38 16 4 S 0.18 4.71 23.23 -56.49 -1.31 3.40 16 5 C 0.06 2.14 7.69 84.74 0.65 2.79 16 6 N -0.52 -19.26 10.47 -196.05 -2.05 -21.31 16 7 C 0.31 11.51 12.27 180.95 2.22 13.73 16 8 N -0.58 -25.09 9.54 -196.42 -1.87 -26.96 16 9 C 0.43 18.30 3.82 133.96 0.51 18.81 16 10 N -0.47 -19.91 2.07 -676.02 -1.40 -21.30 16 11 C 0.21 11.09 4.44 85.56 0.38 11.47 16 12 C -0.52 -28.69 8.70 25.60 0.22 -28.46 16 13 H 0.06 3.46 6.61 -2.91 -0.02 3.44 16 14 C 0.01 0.50 5.46 84.66 0.46 0.97 16 15 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 16 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 C 0.08 3.00 2.52 45.64 0.11 3.12 16 21 C -0.12 -3.40 5.51 31.67 0.17 -3.22 16 22 C -0.11 -2.38 6.91 31.89 0.22 -2.16 16 23 C -0.11 -2.46 6.83 31.67 0.22 -2.24 16 24 C -0.11 -3.58 5.69 31.32 0.18 -3.40 16 25 C -0.17 -6.43 5.61 -20.26 -0.11 -6.54 16 26 H 0.08 2.06 7.66 -2.39 -0.02 2.04 16 27 H 0.08 2.84 5.08 -2.38 -0.01 2.83 16 28 H 0.08 1.90 8.10 -2.39 -0.02 1.88 16 29 H 0.21 3.40 8.06 -2.91 -0.02 3.37 16 30 H 0.23 6.40 8.06 -2.91 -0.02 6.38 16 31 H 0.03 1.43 6.46 -2.38 -0.02 1.42 16 32 H -0.02 -1.33 7.43 -2.39 -0.02 -1.35 16 33 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.03 1.01 8.14 -2.38 -0.02 1.00 16 35 H 0.07 2.15 6.72 -2.38 -0.02 2.13 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 2.29 7.00 -2.39 -0.02 2.27 16 Total: -1.00 -68.17 347.55 3.23 -64.94 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.03 Total: 13.64 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 6.52 Total: -3.63 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -5.04 Total: -124.89 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.31 Total: 3.40 kcal Total: -68.17 3.23 -64.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.491 kcal (2) G-P(sol) polarization free energy of solvation -68.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds