Wall clock time and date at job start Tue Mar 31 2020 11:11:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 N 1.31364 * 118.87477 * 2 1
4 4 C 1.33966 * 120.94236 * 180.09162 * 3 2 1
5 5 S 1.75438 * 131.28090 * 180.02562 * 4 3 2
6 6 C 1.75841 * 92.51605 * 180.02562 * 5 4 3
7 7 C 1.33344 * 111.35207 * 0.28185 * 6 5 4
8 8 C 1.39315 * 119.16283 * 0.08461 * 4 3 2
9 9 C 1.42015 * 117.69171 * 359.76402 * 8 4 3
10 10 N 1.38191 * 120.60662 * 180.22734 * 9 8 4
11 11 C 1.46508 * 119.99973 * 275.66180 * 10 9 8
12 12 C 1.36909 * 120.00267 * 95.67035 * 10 9 8
13 13 H 1.07995 * 119.99873 * 0.89439 * 12 10 9
14 14 C 1.38824 * 120.00267 * 180.89207 * 12 10 9
15 15 N 1.31549 * 119.99991 * 350.85456 * 14 12 10
16 16 Si 1.86796 * 120.00127 * 170.84548 * 14 12 10
17 17 H 1.48502 * 109.46927 * 60.00644 * 16 14 12
18 18 H 1.48499 * 109.47025 * 180.02562 * 16 14 12
19 19 H 1.48494 * 109.47536 * 300.00668 * 16 14 12
20 20 N 1.31984 * 118.87678 * 180.02562 * 2 1 3
21 21 C 1.52161 * 124.36520 * 179.33965 * 7 6 5
22 22 C 1.52455 * 110.31243 * 27.55804 * 21 7 6
23 23 C 1.52720 * 109.53632 * 269.97230 * 22 21 7
24 24 C 1.52605 * 109.68667 * 61.43197 * 23 22 21
25 25 C 1.51520 * 123.58199 * 180.32443 * 6 5 4
26 26 H 1.09001 * 109.47525 * 90.00107 * 1 2 3
27 27 H 1.08999 * 109.47540 * 210.00156 * 1 2 3
28 28 H 1.08999 * 109.47810 * 330.00171 * 1 2 3
29 29 H 1.08994 * 109.46944 * 2.14440 * 11 10 9
30 30 H 1.09001 * 109.46781 * 122.14081 * 11 10 9
31 31 H 1.08995 * 109.47514 * 242.13812 * 11 10 9
32 32 H 0.96997 * 120.00325 * 180.02562 * 15 14 12
33 33 H 1.09006 * 109.33337 * 267.29939 * 21 7 6
34 34 H 1.09007 * 109.19466 * 147.73122 * 21 7 6
35 35 H 1.08998 * 109.46082 * 149.95279 * 22 21 7
36 36 H 1.09002 * 109.44654 * 29.98479 * 22 21 7
37 37 H 1.09000 * 109.43107 * 301.36841 * 23 22 21
38 38 H 1.08996 * 109.43189 * 181.50144 * 23 22 21
39 39 H 1.09001 * 109.52807 * 153.23357 * 24 23 22
40 40 H 1.08994 * 109.53190 * 273.38091 * 24 23 22
41 41 H 1.09006 * 109.28086 * 107.34299 * 25 6 5
42 42 H 1.09000 * 109.38323 * 347.80770 * 25 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.1413 1.1503 0.0000
4 6 3.4801 1.1987 -0.0018
5 16 4.5892 2.5579 -0.0018
6 6 5.9991 1.5071 -0.0058
7 6 5.6462 0.2213 -0.0132
8 6 4.2024 0.0074 -0.0056
9 6 3.4693 -1.2089 -0.0021
10 7 4.1248 -2.4255 -0.0007
11 6 4.5805 -3.0134 -1.2629
12 6 4.3482 -3.0814 1.1800
13 1 3.9995 -2.6551 2.1090
14 6 5.0231 -4.2946 1.1832
15 7 5.2892 -4.9023 0.0472
16 14 5.5535 -5.0641 2.8006
17 1 4.3578 -5.3166 3.6443
18 1 6.2509 -6.3475 2.5329
19 1 6.4738 -4.1398 3.5103
20 7 2.1443 -1.1557 -0.0005
21 6 6.6301 -0.9393 -0.0329
22 6 7.9457 -0.5289 0.6191
23 6 8.8819 0.0494 -0.4399
24 6 8.2505 1.2924 -1.0607
25 6 7.4254 2.0184 -0.0004
26 1 -0.3634 0.0000 -1.0276
27 1 -0.3634 -0.8899 0.5138
28 1 -0.3635 0.8900 0.5138
29 1 4.3491 -2.3351 -2.0841
30 1 5.6572 -3.1774 -1.2195
31 1 4.0743 -3.9651 -1.4241
32 1 5.7603 -5.7501 0.0494
33 1 6.8163 -1.2371 -1.0648
34 1 6.2033 -1.7802 0.5139
35 1 8.4112 -1.4011 1.0780
36 1 7.7526 0.2240 1.3833
37 1 9.0552 -0.6956 -1.2164
38 1 9.8315 0.3176 0.0231
39 1 9.0346 1.9542 -1.4286
40 1 7.6040 0.9985 -1.8875
41 1 7.8661 1.8452 0.9814
42 1 7.4272 3.0878 -0.2111
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001166802368.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:11:11
Heat of formation + Delta-G solvation = 87.715149 kcal
Electronic energy + Delta-G solvation = -25291.738048 eV
Core-core repulsion = 21977.834470 eV
Total energy + Delta-G solvation = -3313.903578 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 317.126 amu
Computer time = 1.37 seconds
Orbital eigenvalues (eV)
-40.47641 -38.45320 -36.27610 -34.56909 -32.68398 -31.47481 -31.15616 -30.33849
-27.80910 -26.33617 -25.32519 -24.53320 -23.98573 -22.50927 -20.93984 -19.35404
-18.95357 -17.69121 -17.38415 -16.42184 -15.99648 -15.32817 -14.90383 -14.67931
-14.11809 -13.81632 -13.59539 -13.38509 -13.23728 -13.16213 -13.02530 -12.48385
-12.18051 -12.04147 -11.91688 -11.52262 -11.46810 -11.17903 -11.05442 -10.93770
-10.80389 -10.74366 -10.45947 -10.41836 -10.24865 -10.17348 -10.14432 -9.88247
-9.62924 -8.87743 -8.59190 -8.24360 -7.59439 -7.33510 -6.00865 -3.47220
0.99336 1.57861 1.60169 2.27082 2.62406 3.24665 3.29400 3.30542
4.09472 4.28593 4.50221 4.62208 4.78912 5.01001 5.07117 5.08847
5.18479 5.28488 5.40970 5.55484 5.56461 5.67469 5.74397 5.81117
5.82671 5.95480 5.96805 6.03309 6.14546 6.19159 6.30724 6.38052
6.41971 6.45553 6.51595 6.69047 6.75290 6.83384 7.23885 7.30301
7.49044 7.58740 7.64293 8.03365 8.76556 8.88559 9.51398 9.82425
10.96246
Molecular weight = 317.13amu
Principal moments of inertia in cm(-1)
A = 0.009900 B = 0.007498 C = 0.004773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2827.732953 B = 3733.266128 C = 5865.218737
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.334 3.666
3 N -0.524 5.524
4 C 0.101 3.899
5 S 0.104 5.896
6 C -0.199 4.199
7 C -0.021 4.021
8 C -0.194 4.194
9 C 0.502 3.498
10 N -0.538 5.538
11 C 0.169 3.831
12 C -0.258 4.258
13 H 0.079 0.921
14 C 0.016 3.984
15 N -0.899 5.899
16 Si 0.917 3.083
17 H -0.280 1.280
18 H -0.285 1.285
19 H -0.278 1.278
20 N -0.545 5.545
21 C -0.073 4.073
22 C -0.123 4.123
23 C -0.120 4.120
24 C -0.113 4.113
25 C -0.039 4.039
26 H 0.079 0.921
27 H 0.084 0.916
28 H 0.079 0.921
29 H -0.004 1.004
30 H 0.058 0.942
31 H 0.062 0.938
32 H 0.260 0.740
33 H 0.072 0.928
34 H 0.124 0.876
35 H 0.065 0.935
36 H 0.066 0.934
37 H 0.063 0.937
38 H 0.057 0.943
39 H 0.063 0.937
40 H 0.066 0.934
41 H 0.084 0.916
42 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.758 10.921 -1.733 11.679
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.062 3.938
3 N -0.244 5.244
4 C -0.150 4.150
5 S 0.363 5.637
6 C -0.314 4.314
7 C -0.033 4.033
8 C -0.212 4.212
9 C 0.256 3.744
10 N -0.255 5.255
11 C 0.027 3.973
12 C -0.385 4.385
13 H 0.097 0.903
14 C -0.184 4.184
15 N -0.542 5.542
16 Si 0.746 3.254
17 H -0.206 1.206
18 H -0.211 1.211
19 H -0.204 1.204
20 N -0.265 5.265
21 C -0.112 4.112
22 C -0.160 4.160
23 C -0.157 4.157
24 C -0.152 4.152
25 C -0.078 4.078
26 H 0.098 0.902
27 H 0.102 0.898
28 H 0.098 0.902
29 H 0.014 0.986
30 H 0.077 0.923
31 H 0.081 0.919
32 H 0.070 0.930
33 H 0.090 0.910
34 H 0.142 0.858
35 H 0.083 0.917
36 H 0.085 0.915
37 H 0.082 0.918
38 H 0.076 0.924
39 H 0.082 0.918
40 H 0.085 0.915
41 H 0.102 0.898
42 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 2.719 12.253 -1.777 12.676
hybrid contribution 0.983 -1.941 0.777 2.310
sum 3.702 10.312 -1.001 11.002
Atomic orbital electron populations
1.20480 0.86296 1.03570 1.03275 1.22955 0.97413 0.82897 0.90581
1.67851 1.06188 1.30344 1.20053 1.23482 0.94394 0.96464 1.00611
1.83709 0.93765 1.06256 1.79957 1.24146 0.98036 0.95302 1.13957
1.20302 0.91599 0.93950 0.97473 1.21356 0.94695 0.95192 1.09930
1.18494 0.85911 0.87040 0.82967 1.41574 1.60567 1.17045 1.06318
1.21309 1.00310 0.94838 0.80855 1.19197 1.31996 1.03180 0.84119
0.90324 1.24907 0.99448 0.96179 0.97837 1.70180 1.43285 1.16979
1.23793 0.86124 0.78774 0.78490 0.82051 1.20585 1.21064 1.20395
1.68506 1.11121 1.29388 1.17523 1.20863 0.91918 0.96298 1.02163
1.21589 0.95561 1.00760 0.98076 1.21577 0.98179 0.97196 0.98777
1.21474 0.98682 0.96905 0.98107 1.20207 0.88278 0.98753 1.00611
0.90202 0.89768 0.90234 0.98580 0.92306 0.91920 0.92951 0.91018
0.85765 0.91660 0.91510 0.91842 0.92449 0.91790 0.91506 0.89804
0.91572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 25.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.14 10.30 36.00 0.37 -0.77 16
2 C 0.33 6.69 7.64 -157.40 -1.20 5.49 16
3 N -0.52 -10.63 10.37 -9.65 -0.10 -10.74 16
4 C 0.10 2.05 7.67 -16.22 -0.12 1.93 16
5 S 0.10 1.69 23.16 -107.50 -2.49 -0.80 16
6 C -0.20 -3.20 5.64 -35.61 -0.20 -3.40 16
7 C -0.02 -0.40 5.69 -102.52 -0.58 -0.99 16
8 C -0.19 -4.16 6.05 -104.96 -0.63 -4.79 16
9 C 0.50 11.83 6.06 -154.52 -0.94 10.89 16
10 N -0.54 -13.22 1.65 -121.71 -0.20 -13.42 16
11 C 0.17 4.01 8.06 59.85 0.48 4.50 16
12 C -0.26 -6.69 8.20 -15.07 -0.12 -6.82 16
13 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16
14 C 0.02 0.40 5.42 -17.46 -0.09 0.31 16
15 N -0.90 -23.37 9.51 55.49 0.53 -22.85 16
16 Si 0.92 20.41 29.56 -169.99 -5.03 15.39 16
17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
18 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16
19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16
20 N -0.54 -12.51 10.32 -9.56 -0.10 -12.61 16
21 C -0.07 -1.34 4.07 -27.44 -0.11 -1.45 16
22 C -0.12 -1.82 5.52 -27.15 -0.15 -1.97 16
23 C -0.12 -1.45 5.70 -27.08 -0.15 -1.60 16
24 C -0.11 -1.32 5.65 -27.08 -0.15 -1.47 16
25 C -0.04 -0.49 5.42 -27.63 -0.15 -0.64 16
26 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16
27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
29 H 0.00 -0.10 7.90 -51.93 -0.41 -0.51 16
30 H 0.06 1.40 6.17 -51.93 -0.32 1.08 16
31 H 0.06 1.61 6.97 -51.93 -0.36 1.25 16
32 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16
33 H 0.07 1.31 7.38 -51.93 -0.38 0.93 16
34 H 0.12 2.73 4.79 -51.93 -0.25 2.48 16
35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16
36 H 0.07 0.97 5.49 -51.93 -0.28 0.69 16
37 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16
38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
40 H 0.07 0.87 7.82 -51.93 -0.41 0.47 16
41 H 0.08 1.00 6.11 -51.93 -0.32 0.68 16
42 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16
LS Contribution 336.82 15.07 5.08 5.08
Total: -1.00 -28.01 336.82 -11.73 -39.74
By element:
Atomic # 1 Polarization: 6.64 SS G_CDS: -5.66 Total: 0.99 kcal
Atomic # 6 Polarization: 2.98 SS G_CDS: -3.77 Total: -0.78 kcal
Atomic # 7 Polarization: -59.74 SS G_CDS: 0.13 Total: -59.61 kcal
Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.39 kcal
Atomic # 16 Polarization: 1.69 SS G_CDS: -2.49 Total: -0.80 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -28.01 -11.73 -39.74 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166802368.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 127.460 kcal
(2) G-P(sol) polarization free energy of solvation -28.011 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.449 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.734 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal
(6) G-S(sol) free energy of system = (1) + (5) 87.715 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.37 seconds