Wall clock time and date at job start Tue Mar 31 2020 11:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31364 * 118.87477 * 2 1 4 4 C 1.33966 * 120.94236 * 180.09162 * 3 2 1 5 5 S 1.75438 * 131.28090 * 180.02562 * 4 3 2 6 6 C 1.75841 * 92.51605 * 180.02562 * 5 4 3 7 7 C 1.33344 * 111.35207 * 0.28185 * 6 5 4 8 8 C 1.39315 * 119.16283 * 0.08461 * 4 3 2 9 9 C 1.42015 * 117.69171 * 359.76402 * 8 4 3 10 10 N 1.38191 * 120.60662 * 180.22734 * 9 8 4 11 11 C 1.46508 * 119.99973 * 275.66180 * 10 9 8 12 12 C 1.36909 * 120.00267 * 95.67035 * 10 9 8 13 13 H 1.07995 * 119.99873 * 0.89439 * 12 10 9 14 14 C 1.38824 * 120.00267 * 180.89207 * 12 10 9 15 15 N 1.31549 * 119.99991 * 350.85456 * 14 12 10 16 16 Si 1.86796 * 120.00127 * 170.84548 * 14 12 10 17 17 H 1.48502 * 109.46927 * 60.00644 * 16 14 12 18 18 H 1.48499 * 109.47025 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47536 * 300.00668 * 16 14 12 20 20 N 1.31984 * 118.87678 * 180.02562 * 2 1 3 21 21 C 1.52161 * 124.36520 * 179.33965 * 7 6 5 22 22 C 1.52455 * 110.31243 * 27.55804 * 21 7 6 23 23 C 1.52720 * 109.53632 * 269.97230 * 22 21 7 24 24 C 1.52605 * 109.68667 * 61.43197 * 23 22 21 25 25 C 1.51520 * 123.58199 * 180.32443 * 6 5 4 26 26 H 1.09001 * 109.47525 * 90.00107 * 1 2 3 27 27 H 1.08999 * 109.47540 * 210.00156 * 1 2 3 28 28 H 1.08999 * 109.47810 * 330.00171 * 1 2 3 29 29 H 1.08994 * 109.46944 * 2.14440 * 11 10 9 30 30 H 1.09001 * 109.46781 * 122.14081 * 11 10 9 31 31 H 1.08995 * 109.47514 * 242.13812 * 11 10 9 32 32 H 0.96997 * 120.00325 * 180.02562 * 15 14 12 33 33 H 1.09006 * 109.33337 * 267.29939 * 21 7 6 34 34 H 1.09007 * 109.19466 * 147.73122 * 21 7 6 35 35 H 1.08998 * 109.46082 * 149.95279 * 22 21 7 36 36 H 1.09002 * 109.44654 * 29.98479 * 22 21 7 37 37 H 1.09000 * 109.43107 * 301.36841 * 23 22 21 38 38 H 1.08996 * 109.43189 * 181.50144 * 23 22 21 39 39 H 1.09001 * 109.52807 * 153.23357 * 24 23 22 40 40 H 1.08994 * 109.53190 * 273.38091 * 24 23 22 41 41 H 1.09006 * 109.28086 * 107.34299 * 25 6 5 42 42 H 1.09000 * 109.38323 * 347.80770 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1413 1.1503 0.0000 4 6 3.4801 1.1987 -0.0018 5 16 4.5892 2.5579 -0.0018 6 6 5.9991 1.5071 -0.0058 7 6 5.6462 0.2213 -0.0132 8 6 4.2024 0.0074 -0.0056 9 6 3.4693 -1.2089 -0.0021 10 7 4.1248 -2.4255 -0.0007 11 6 4.5805 -3.0134 -1.2629 12 6 4.3482 -3.0814 1.1800 13 1 3.9995 -2.6551 2.1090 14 6 5.0231 -4.2946 1.1832 15 7 5.2892 -4.9023 0.0472 16 14 5.5535 -5.0641 2.8006 17 1 4.3578 -5.3166 3.6443 18 1 6.2509 -6.3475 2.5329 19 1 6.4738 -4.1398 3.5103 20 7 2.1443 -1.1557 -0.0005 21 6 6.6301 -0.9393 -0.0329 22 6 7.9457 -0.5289 0.6191 23 6 8.8819 0.0494 -0.4399 24 6 8.2505 1.2924 -1.0607 25 6 7.4254 2.0184 -0.0004 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3635 0.8900 0.5138 29 1 4.3491 -2.3351 -2.0841 30 1 5.6572 -3.1774 -1.2195 31 1 4.0743 -3.9651 -1.4241 32 1 5.7603 -5.7501 0.0494 33 1 6.8163 -1.2371 -1.0648 34 1 6.2033 -1.7802 0.5139 35 1 8.4112 -1.4011 1.0780 36 1 7.7526 0.2240 1.3833 37 1 9.0552 -0.6956 -1.2164 38 1 9.8315 0.3176 0.0231 39 1 9.0346 1.9542 -1.4286 40 1 7.6040 0.9985 -1.8875 41 1 7.8661 1.8452 0.9814 42 1 7.4272 3.0878 -0.2111 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166802368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:11 Heat of formation + Delta-G solvation = 87.715149 kcal Electronic energy + Delta-G solvation = -25291.738048 eV Core-core repulsion = 21977.834470 eV Total energy + Delta-G solvation = -3313.903578 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.47641 -38.45320 -36.27610 -34.56909 -32.68398 -31.47481 -31.15616 -30.33849 -27.80910 -26.33617 -25.32519 -24.53320 -23.98573 -22.50927 -20.93984 -19.35404 -18.95357 -17.69121 -17.38415 -16.42184 -15.99648 -15.32817 -14.90383 -14.67931 -14.11809 -13.81632 -13.59539 -13.38509 -13.23728 -13.16213 -13.02530 -12.48385 -12.18051 -12.04147 -11.91688 -11.52262 -11.46810 -11.17903 -11.05442 -10.93770 -10.80389 -10.74366 -10.45947 -10.41836 -10.24865 -10.17348 -10.14432 -9.88247 -9.62924 -8.87743 -8.59190 -8.24360 -7.59439 -7.33510 -6.00865 -3.47220 0.99336 1.57861 1.60169 2.27082 2.62406 3.24665 3.29400 3.30542 4.09472 4.28593 4.50221 4.62208 4.78912 5.01001 5.07117 5.08847 5.18479 5.28488 5.40970 5.55484 5.56461 5.67469 5.74397 5.81117 5.82671 5.95480 5.96805 6.03309 6.14546 6.19159 6.30724 6.38052 6.41971 6.45553 6.51595 6.69047 6.75290 6.83384 7.23885 7.30301 7.49044 7.58740 7.64293 8.03365 8.76556 8.88559 9.51398 9.82425 10.96246 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.009900 B = 0.007498 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.732953 B = 3733.266128 C = 5865.218737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.334 3.666 3 N -0.524 5.524 4 C 0.101 3.899 5 S 0.104 5.896 6 C -0.199 4.199 7 C -0.021 4.021 8 C -0.194 4.194 9 C 0.502 3.498 10 N -0.538 5.538 11 C 0.169 3.831 12 C -0.258 4.258 13 H 0.079 0.921 14 C 0.016 3.984 15 N -0.899 5.899 16 Si 0.917 3.083 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.278 1.278 20 N -0.545 5.545 21 C -0.073 4.073 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.039 4.039 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.079 0.921 29 H -0.004 1.004 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.260 0.740 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.758 10.921 -1.733 11.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.062 3.938 3 N -0.244 5.244 4 C -0.150 4.150 5 S 0.363 5.637 6 C -0.314 4.314 7 C -0.033 4.033 8 C -0.212 4.212 9 C 0.256 3.744 10 N -0.255 5.255 11 C 0.027 3.973 12 C -0.385 4.385 13 H 0.097 0.903 14 C -0.184 4.184 15 N -0.542 5.542 16 Si 0.746 3.254 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.204 1.204 20 N -0.265 5.265 21 C -0.112 4.112 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.078 4.078 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.014 0.986 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.719 12.253 -1.777 12.676 hybrid contribution 0.983 -1.941 0.777 2.310 sum 3.702 10.312 -1.001 11.002 Atomic orbital electron populations 1.20480 0.86296 1.03570 1.03275 1.22955 0.97413 0.82897 0.90581 1.67851 1.06188 1.30344 1.20053 1.23482 0.94394 0.96464 1.00611 1.83709 0.93765 1.06256 1.79957 1.24146 0.98036 0.95302 1.13957 1.20302 0.91599 0.93950 0.97473 1.21356 0.94695 0.95192 1.09930 1.18494 0.85911 0.87040 0.82967 1.41574 1.60567 1.17045 1.06318 1.21309 1.00310 0.94838 0.80855 1.19197 1.31996 1.03180 0.84119 0.90324 1.24907 0.99448 0.96179 0.97837 1.70180 1.43285 1.16979 1.23793 0.86124 0.78774 0.78490 0.82051 1.20585 1.21064 1.20395 1.68506 1.11121 1.29388 1.17523 1.20863 0.91918 0.96298 1.02163 1.21589 0.95561 1.00760 0.98076 1.21577 0.98179 0.97196 0.98777 1.21474 0.98682 0.96905 0.98107 1.20207 0.88278 0.98753 1.00611 0.90202 0.89768 0.90234 0.98580 0.92306 0.91920 0.92951 0.91018 0.85765 0.91660 0.91510 0.91842 0.92449 0.91790 0.91506 0.89804 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.30 36.00 0.37 -0.77 16 2 C 0.33 6.69 7.64 -157.40 -1.20 5.49 16 3 N -0.52 -10.63 10.37 -9.65 -0.10 -10.74 16 4 C 0.10 2.05 7.67 -16.22 -0.12 1.93 16 5 S 0.10 1.69 23.16 -107.50 -2.49 -0.80 16 6 C -0.20 -3.20 5.64 -35.61 -0.20 -3.40 16 7 C -0.02 -0.40 5.69 -102.52 -0.58 -0.99 16 8 C -0.19 -4.16 6.05 -104.96 -0.63 -4.79 16 9 C 0.50 11.83 6.06 -154.52 -0.94 10.89 16 10 N -0.54 -13.22 1.65 -121.71 -0.20 -13.42 16 11 C 0.17 4.01 8.06 59.85 0.48 4.50 16 12 C -0.26 -6.69 8.20 -15.07 -0.12 -6.82 16 13 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 14 C 0.02 0.40 5.42 -17.46 -0.09 0.31 16 15 N -0.90 -23.37 9.51 55.49 0.53 -22.85 16 16 Si 0.92 20.41 29.56 -169.99 -5.03 15.39 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 N -0.54 -12.51 10.32 -9.56 -0.10 -12.61 16 21 C -0.07 -1.34 4.07 -27.44 -0.11 -1.45 16 22 C -0.12 -1.82 5.52 -27.15 -0.15 -1.97 16 23 C -0.12 -1.45 5.70 -27.08 -0.15 -1.60 16 24 C -0.11 -1.32 5.65 -27.08 -0.15 -1.47 16 25 C -0.04 -0.49 5.42 -27.63 -0.15 -0.64 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.00 -0.10 7.90 -51.93 -0.41 -0.51 16 30 H 0.06 1.40 6.17 -51.93 -0.32 1.08 16 31 H 0.06 1.61 6.97 -51.93 -0.36 1.25 16 32 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 33 H 0.07 1.31 7.38 -51.93 -0.38 0.93 16 34 H 0.12 2.73 4.79 -51.93 -0.25 2.48 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.97 5.49 -51.93 -0.28 0.69 16 37 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.87 7.82 -51.93 -0.41 0.47 16 41 H 0.08 1.00 6.11 -51.93 -0.32 0.68 16 42 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -28.01 336.82 -11.73 -39.74 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.66 Total: 0.99 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -3.77 Total: -0.78 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.13 Total: -59.61 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.39 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.49 Total: -0.80 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.01 -11.73 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.460 kcal (2) G-P(sol) polarization free energy of solvation -28.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds