Wall clock time and date at job start Tue Mar 31 2020 11:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31364 * 118.87477 * 2 1 4 4 C 1.33966 * 120.94236 * 180.09162 * 3 2 1 5 5 S 1.75438 * 131.28090 * 180.02562 * 4 3 2 6 6 C 1.75841 * 92.51605 * 180.02562 * 5 4 3 7 7 C 1.33344 * 111.35207 * 0.28185 * 6 5 4 8 8 C 1.39315 * 119.16283 * 0.08461 * 4 3 2 9 9 C 1.42015 * 117.69171 * 359.76402 * 8 4 3 10 10 N 1.38191 * 120.60662 * 180.22734 * 9 8 4 11 11 C 1.46508 * 119.99973 * 275.66180 * 10 9 8 12 12 C 1.36909 * 120.00267 * 95.67035 * 10 9 8 13 13 H 1.07995 * 119.99873 * 0.89439 * 12 10 9 14 14 C 1.38824 * 120.00267 * 180.89207 * 12 10 9 15 15 N 1.31549 * 119.99991 * 350.85456 * 14 12 10 16 16 Si 1.86796 * 120.00127 * 170.84548 * 14 12 10 17 17 H 1.48502 * 109.46927 * 60.00644 * 16 14 12 18 18 H 1.48499 * 109.47025 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47536 * 300.00668 * 16 14 12 20 20 N 1.31984 * 118.87678 * 180.02562 * 2 1 3 21 21 C 1.52161 * 124.36520 * 179.33965 * 7 6 5 22 22 C 1.52455 * 110.31243 * 27.55804 * 21 7 6 23 23 C 1.52720 * 109.53632 * 269.97230 * 22 21 7 24 24 C 1.52605 * 109.68667 * 61.43197 * 23 22 21 25 25 C 1.51520 * 123.58199 * 180.32443 * 6 5 4 26 26 H 1.09001 * 109.47525 * 90.00107 * 1 2 3 27 27 H 1.08999 * 109.47540 * 210.00156 * 1 2 3 28 28 H 1.08999 * 109.47810 * 330.00171 * 1 2 3 29 29 H 1.08994 * 109.46944 * 2.14440 * 11 10 9 30 30 H 1.09001 * 109.46781 * 122.14081 * 11 10 9 31 31 H 1.08995 * 109.47514 * 242.13812 * 11 10 9 32 32 H 0.96997 * 120.00325 * 180.02562 * 15 14 12 33 33 H 1.09006 * 109.33337 * 267.29939 * 21 7 6 34 34 H 1.09007 * 109.19466 * 147.73122 * 21 7 6 35 35 H 1.08998 * 109.46082 * 149.95279 * 22 21 7 36 36 H 1.09002 * 109.44654 * 29.98479 * 22 21 7 37 37 H 1.09000 * 109.43107 * 301.36841 * 23 22 21 38 38 H 1.08996 * 109.43189 * 181.50144 * 23 22 21 39 39 H 1.09001 * 109.52807 * 153.23357 * 24 23 22 40 40 H 1.08994 * 109.53190 * 273.38091 * 24 23 22 41 41 H 1.09006 * 109.28086 * 107.34299 * 25 6 5 42 42 H 1.09000 * 109.38323 * 347.80770 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1413 1.1503 0.0000 4 6 3.4801 1.1987 -0.0018 5 16 4.5892 2.5579 -0.0018 6 6 5.9991 1.5071 -0.0058 7 6 5.6462 0.2213 -0.0132 8 6 4.2024 0.0074 -0.0056 9 6 3.4693 -1.2089 -0.0021 10 7 4.1248 -2.4255 -0.0007 11 6 4.5805 -3.0134 -1.2629 12 6 4.3482 -3.0814 1.1800 13 1 3.9995 -2.6551 2.1090 14 6 5.0231 -4.2946 1.1832 15 7 5.2892 -4.9023 0.0472 16 14 5.5535 -5.0641 2.8006 17 1 4.3578 -5.3166 3.6443 18 1 6.2509 -6.3475 2.5329 19 1 6.4738 -4.1398 3.5103 20 7 2.1443 -1.1557 -0.0005 21 6 6.6301 -0.9393 -0.0329 22 6 7.9457 -0.5289 0.6191 23 6 8.8819 0.0494 -0.4399 24 6 8.2505 1.2924 -1.0607 25 6 7.4254 2.0184 -0.0004 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3635 0.8900 0.5138 29 1 4.3491 -2.3351 -2.0841 30 1 5.6572 -3.1774 -1.2195 31 1 4.0743 -3.9651 -1.4241 32 1 5.7603 -5.7501 0.0494 33 1 6.8163 -1.2371 -1.0648 34 1 6.2033 -1.7802 0.5139 35 1 8.4112 -1.4011 1.0780 36 1 7.7526 0.2240 1.3833 37 1 9.0552 -0.6956 -1.2164 38 1 9.8315 0.3176 0.0231 39 1 9.0346 1.9542 -1.4286 40 1 7.6040 0.9985 -1.8875 41 1 7.8661 1.8452 0.9814 42 1 7.4272 3.0878 -0.2111 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166802368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:10 Heat of formation + Delta-G solvation = 74.916907 kcal Electronic energy + Delta-G solvation = -25292.293022 eV Core-core repulsion = 21977.834470 eV Total energy + Delta-G solvation = -3314.458552 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.06531 -39.70853 -38.04801 -35.93985 -34.45129 -32.91992 -32.43621 -31.95156 -29.11115 -28.27675 -26.88904 -25.81340 -25.42105 -24.06916 -22.59281 -20.47337 -20.32780 -19.46289 -18.88706 -18.16871 -17.43629 -16.84414 -16.43316 -16.11348 -15.65591 -15.21087 -15.07045 -14.91411 -14.72932 -14.48581 -14.41063 -13.71868 -13.61663 -13.33401 -13.25622 -13.16707 -12.84860 -12.80288 -12.66696 -12.44576 -12.41384 -12.23880 -12.10124 -11.98269 -11.71559 -11.54952 -11.46050 -11.15187 -11.06162 -10.73929 -10.29046 -9.71047 -9.36065 -8.83843 -7.93712 -5.45895 -0.53358 -0.08087 0.14249 0.84827 1.16095 1.44617 1.45520 1.52920 2.31084 2.66207 2.82125 3.10669 3.22230 3.51855 3.60985 3.89390 3.97413 4.05377 4.16084 4.21725 4.32098 4.40538 4.52359 4.58896 4.69251 4.73490 4.78639 4.80342 4.86413 4.97352 5.04125 5.13866 5.16186 5.28568 5.32712 5.33739 5.44486 5.46531 5.48127 5.54736 5.62124 5.80924 5.98239 6.11955 6.91756 7.15148 7.63027 7.93296 9.03225 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.009900 B = 0.007498 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.732953 B = 3733.266128 C = 5865.218737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.320 3.680 3 N -0.521 5.521 4 C 0.069 3.931 5 S 0.174 5.826 6 C -0.175 4.175 7 C -0.057 4.057 8 C -0.209 4.209 9 C 0.481 3.519 10 N -0.551 5.551 11 C 0.194 3.806 12 C -0.269 4.269 13 H 0.061 0.939 14 C -0.021 4.021 15 N -0.922 5.922 16 Si 0.973 3.027 17 H -0.284 1.284 18 H -0.282 1.282 19 H -0.271 1.271 20 N -0.573 5.573 21 C -0.063 4.063 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.109 4.109 25 C -0.042 4.042 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.001 0.999 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.257 0.743 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 14.084 -1.412 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.048 3.952 3 N -0.240 5.240 4 C -0.182 4.182 5 S 0.434 5.566 6 C -0.290 4.290 7 C -0.068 4.068 8 C -0.226 4.226 9 C 0.236 3.764 10 N -0.271 5.271 11 C 0.051 3.949 12 C -0.397 4.397 13 H 0.079 0.921 14 C -0.218 4.218 15 N -0.567 5.567 16 Si 0.799 3.201 17 H -0.210 1.210 18 H -0.207 1.207 19 H -0.197 1.197 20 N -0.295 5.295 21 C -0.102 4.102 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.148 4.148 25 C -0.082 4.082 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.019 0.981 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.067 15.473 -1.457 16.065 hybrid contribution 0.510 -2.656 0.653 2.783 sum 4.576 12.817 -0.804 13.633 Atomic orbital electron populations 1.20635 0.82731 1.04788 1.04904 1.23885 0.99472 0.82105 0.89717 1.68002 1.06315 1.30234 1.19458 1.24135 0.94884 0.98264 1.00908 1.83461 0.91548 1.03383 1.78207 1.24813 1.00287 0.94483 1.09430 1.20317 0.90425 0.95280 1.00822 1.21575 0.96375 0.94893 1.09754 1.18822 0.86457 0.87409 0.83744 1.41448 1.62081 1.17772 1.05796 1.20921 0.99224 0.93534 0.81203 1.19091 1.32937 1.03403 0.84233 0.92084 1.25494 0.99402 0.96398 1.00480 1.70304 1.44184 1.17128 1.25078 0.85280 0.78174 0.77761 0.78865 1.20972 1.20685 1.19683 1.68461 1.11386 1.31249 1.18357 1.20630 0.93421 0.95075 1.01096 1.21571 0.94277 1.00840 0.98895 1.21544 0.98510 0.97295 0.97847 1.21470 0.99106 0.97048 0.97141 1.20466 0.85536 1.00363 1.01787 0.88182 0.89450 0.88024 0.98058 0.93099 0.94785 0.93254 0.92204 0.89932 0.92403 0.90915 0.92327 0.89756 0.88430 0.93266 0.88326 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.04 10.30 71.23 0.73 -1.30 16 2 C 0.32 12.83 7.64 138.82 1.06 13.89 16 3 N -0.52 -20.76 10.37 -184.45 -1.91 -22.67 16 4 C 0.07 2.73 7.67 84.63 0.65 3.38 16 5 S 0.17 5.16 23.16 -56.49 -1.31 3.85 16 6 C -0.17 -5.17 5.64 24.84 0.14 -5.03 16 7 C -0.06 -2.13 5.69 -18.50 -0.11 -2.24 16 8 C -0.21 -9.10 6.05 -20.08 -0.12 -9.23 16 9 C 0.48 23.65 6.06 134.00 0.81 24.46 16 10 N -0.55 -28.72 1.65 -538.99 -0.89 -29.61 16 11 C 0.19 9.82 8.06 127.77 1.03 10.85 16 12 C -0.27 -14.77 8.20 84.04 0.69 -14.08 16 13 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 14 C -0.02 -1.11 5.42 84.88 0.46 -0.65 16 15 N -0.92 -50.31 9.51 21.65 0.21 -50.11 16 16 Si 0.97 43.27 29.56 68.60 2.03 45.29 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 N -0.57 -27.26 10.32 -184.17 -1.90 -29.16 16 21 C -0.06 -2.35 4.07 30.14 0.12 -2.23 16 22 C -0.12 -3.40 5.52 30.32 0.17 -3.23 16 23 C -0.11 -2.46 5.70 30.37 0.17 -2.28 16 24 C -0.11 -2.13 5.65 30.37 0.17 -1.96 16 25 C -0.04 -0.87 5.42 30.01 0.16 -0.70 16 26 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.00 0.04 7.90 -2.39 -0.02 0.02 16 30 H 0.05 2.60 6.17 -2.39 -0.01 2.58 16 31 H 0.03 1.87 6.97 -2.39 -0.02 1.85 16 32 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 33 H 0.06 2.29 7.38 -2.38 -0.02 2.27 16 34 H 0.08 3.84 4.79 -2.38 -0.01 3.83 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.97 5.49 -2.39 -0.01 1.96 16 37 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.15 7.82 -2.39 -0.02 1.14 16 41 H 0.10 1.86 6.11 -2.38 -0.01 1.85 16 42 H 0.09 1.48 8.13 -2.39 -0.02 1.46 16 Total: -1.00 -64.53 336.82 3.41 -61.12 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.05 Total: 11.63 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 6.15 Total: 9.65 kcal Atomic # 7 Polarization: -127.05 SS G_CDS: -4.50 Total: -131.55 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -1.31 Total: 3.85 kcal Total: -64.53 3.41 -61.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.036 kcal (2) G-P(sol) polarization free energy of solvation -64.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds