Wall clock time and date at job start Tue Mar 31 2020 12:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 C 1.52998 * 109.47169 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46891 * 180.02562 * 4 3 2 6 6 C 1.36905 * 119.99837 * 274.71438 * 5 4 3 7 7 H 1.07997 * 120.00414 * 326.62676 * 6 5 4 8 8 C 1.38822 * 119.99822 * 146.62531 * 6 5 4 9 9 N 1.31551 * 120.00237 * 154.57395 * 8 6 5 10 10 Si 1.86801 * 119.99990 * 334.57456 * 8 6 5 11 11 H 1.48500 * 109.47348 * 89.37292 * 10 8 6 12 12 H 1.48501 * 109.47306 * 209.37018 * 10 8 6 13 13 H 1.48497 * 109.47380 * 329.37131 * 10 8 6 14 14 C 1.38194 * 120.00208 * 94.72095 * 5 4 3 15 15 N 1.32658 * 120.65321 * 276.52247 * 14 5 4 16 16 C 1.31984 * 121.13929 * 180.30827 * 15 14 5 17 17 N 1.31365 * 122.31663 * 359.72848 * 16 15 14 18 18 C 1.34005 * 120.89786 * 0.02562 * 17 16 15 19 19 S 1.75384 * 131.30973 * 179.97438 * 18 17 16 20 20 C 1.76329 * 92.45744 * 179.97438 * 19 18 17 21 21 C 1.32639 * 111.35653 * 0.02562 * 20 19 18 22 22 C 1.39209 * 119.08987 * 359.96294 * 18 17 16 23 23 C 1.52872 * 110.17664 * 179.97438 * 21 20 19 24 24 C 1.54128 * 104.90940 * 17.57099 * 23 21 20 25 25 C 1.52599 * 138.13469 * 180.02562 * 20 19 18 26 26 H 1.09006 * 109.46876 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47262 * 299.99726 * 1 2 3 28 28 H 1.08998 * 109.47292 * 60.00568 * 1 2 3 29 29 H 1.09003 * 109.47551 * 239.99934 * 2 1 3 30 30 H 1.09009 * 109.47159 * 119.99893 * 2 1 3 31 31 H 1.08997 * 109.46805 * 59.99994 * 3 2 1 32 32 H 1.08997 * 109.47262 * 299.99666 * 3 2 1 33 33 H 1.08997 * 109.47262 * 60.00274 * 4 3 2 34 34 H 1.08998 * 109.47292 * 299.99432 * 4 3 2 35 35 H 0.97002 * 119.99989 * 179.97438 * 9 8 6 36 36 H 1.08000 * 118.83997 * 179.70934 * 16 15 14 37 37 H 1.09010 * 110.34829 * 136.42761 * 23 21 20 38 38 H 1.08998 * 110.35392 * 258.60176 * 23 21 20 39 39 H 1.08995 * 111.00439 * 91.47993 * 24 23 21 40 40 H 1.08996 * 111.00788 * 215.29782 * 24 23 21 41 41 H 1.08997 * 110.36416 * 43.60218 * 25 20 19 42 42 H 1.08995 * 110.45780 * 281.33606 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.1940 3.5023 -1.1813 7 1 4.4751 2.9723 -2.0793 8 6 3.9703 4.8717 -1.2248 9 7 4.5498 5.6037 -2.1516 10 14 2.8465 5.6749 0.0326 11 1 3.6414 6.0799 1.2198 12 1 2.2082 6.8736 -0.5681 13 1 1.7963 4.7097 0.4459 14 6 4.3819 3.4417 1.1929 15 7 3.4426 4.0130 1.9353 16 6 3.7418 4.6111 3.0732 17 7 4.9707 4.6701 3.5336 18 6 5.9866 4.1175 2.8565 19 16 7.7029 4.0347 3.2076 20 6 8.0395 3.1366 1.7280 21 6 6.9319 2.9224 1.0304 22 6 5.7251 3.4740 1.6501 23 6 7.2544 2.1437 -0.2450 24 6 8.6475 1.5332 0.0046 25 6 9.2456 2.5314 1.0154 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 4.3932 6.5605 -2.1822 36 1 2.9484 5.0683 3.6458 37 1 6.5182 1.3557 -0.4044 38 1 7.2813 2.8155 -1.1029 39 1 8.5653 0.5377 0.4408 40 1 9.2333 1.5079 -0.9142 41 1 9.8861 2.0122 1.7282 42 1 9.8087 3.3060 0.4949 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:11 Heat of formation + Delta-G solvation = 91.862844 kcal Electronic energy + Delta-G solvation = -25184.915136 eV Core-core repulsion = 21871.191415 eV Total energy + Delta-G solvation = -3313.723721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.51728 -38.16846 -36.85691 -34.38161 -33.20629 -32.31098 -31.44478 -28.69263 -27.93812 -27.43275 -24.90418 -23.84497 -23.42404 -21.60183 -20.77894 -20.21313 -18.96582 -18.47135 -17.09548 -16.33739 -15.86552 -15.67754 -15.28449 -14.98241 -14.43242 -14.13804 -14.01900 -13.63150 -13.12625 -12.64679 -12.62438 -12.55320 -12.24757 -12.18767 -12.10322 -11.96021 -11.63929 -11.18284 -11.01217 -10.84949 -10.83524 -10.72504 -10.57136 -10.55016 -10.26754 -10.21736 -10.02300 -9.90275 -9.43562 -8.85428 -8.38978 -8.23080 -7.52737 -7.44422 -6.38952 -3.75924 1.02972 1.49932 1.55466 2.30623 2.65702 3.34997 3.47658 3.74858 4.17209 4.33780 4.47900 4.65602 4.82135 4.84217 4.99274 5.19187 5.20590 5.22065 5.32250 5.43138 5.50660 5.67933 5.75519 5.79654 5.81856 5.90525 6.00694 6.07526 6.13820 6.14535 6.20469 6.23107 6.31834 6.36205 6.44612 6.47876 6.58861 6.71097 6.81917 6.83572 7.02525 7.53437 7.69013 7.92903 8.58787 8.72142 9.28522 9.54693 10.69693 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.006290 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.318334 B = 4450.632805 C = 4869.452898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.142 3.858 5 N -0.526 5.526 6 C -0.260 4.260 7 H 0.100 0.900 8 C 0.040 3.960 9 N -0.864 5.864 10 Si 0.901 3.099 11 H -0.295 1.295 12 H -0.315 1.315 13 H -0.246 1.246 14 C 0.477 3.523 15 N -0.554 5.554 16 C 0.322 3.678 17 N -0.526 5.526 18 C 0.096 3.904 19 S 0.137 5.863 20 C -0.232 4.232 21 C -0.038 4.038 22 C -0.166 4.166 23 C -0.053 4.053 24 C -0.119 4.119 25 C -0.034 4.034 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.271 0.729 36 H 0.187 0.813 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.038 -9.085 5.528 11.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.178 4.178 4 C 0.018 3.982 5 N -0.240 5.240 6 C -0.387 4.387 7 H 0.117 0.883 8 C -0.166 4.166 9 N -0.500 5.500 10 Si 0.734 3.266 11 H -0.223 1.223 12 H -0.245 1.245 13 H -0.170 1.170 14 C 0.234 3.766 15 N -0.277 5.277 16 C 0.029 3.971 17 N -0.246 5.246 18 C -0.153 4.153 19 S 0.397 5.603 20 C -0.348 4.348 21 C -0.050 4.050 22 C -0.183 4.183 23 C -0.092 4.092 24 C -0.158 4.158 25 C -0.073 4.073 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.204 0.796 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.291 -8.017 7.086 11.528 hybrid contribution -1.145 0.236 -0.869 1.457 sum 3.146 -7.781 6.216 10.444 Atomic orbital electron populations 1.21751 0.96503 1.00640 1.01772 1.21498 0.95417 0.97929 1.01138 1.22160 0.97699 0.95024 1.02961 1.21320 0.92487 0.84556 0.99814 1.41655 1.70655 1.11515 1.00169 1.18893 1.42848 0.91134 0.85874 0.88275 1.25600 0.97140 0.96729 0.97138 1.69869 1.38600 1.06544 1.34983 0.86456 0.83718 0.77956 0.78481 1.22308 1.24540 1.17011 1.18200 0.85489 0.87414 0.85447 1.68397 1.38820 1.12526 1.07978 1.24357 0.91559 0.92002 0.89143 1.68018 0.99366 1.22143 1.35053 1.23461 0.99249 0.98303 0.94308 1.83493 0.96440 1.59143 1.21244 1.25304 1.00619 1.08932 0.99908 1.20896 0.89646 0.97992 0.96450 1.20615 0.96362 1.05231 0.96105 1.21030 0.95440 0.98518 0.94185 1.22326 0.96490 0.98195 0.98812 1.20808 0.93052 0.97425 0.96044 0.93492 0.93071 0.92807 0.92353 0.92836 0.92079 0.91344 0.91659 0.93834 0.91915 0.79625 0.90487 0.88988 0.91075 0.90226 0.91198 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.52 16 2 C -0.12 -1.68 5.93 -26.73 -0.16 -1.84 16 3 C -0.14 -2.44 5.52 -26.73 -0.15 -2.59 16 4 C 0.14 2.64 5.66 -4.04 -0.02 2.61 16 5 N -0.53 -11.81 2.21 -114.36 -0.25 -12.06 16 6 C -0.26 -6.62 9.89 -15.07 -0.15 -6.77 16 7 H 0.10 2.60 8.06 -52.49 -0.42 2.18 16 8 C 0.04 1.12 5.29 -17.46 -0.09 1.02 16 9 N -0.86 -24.94 13.96 55.49 0.77 -24.16 16 10 Si 0.90 23.51 23.86 -169.99 -4.06 19.46 16 11 H -0.29 -7.91 5.36 56.52 0.30 -7.61 16 12 H -0.32 -8.43 7.11 56.52 0.40 -8.03 16 13 H -0.25 -6.34 6.78 56.52 0.38 -5.96 16 14 C 0.48 11.05 4.33 -154.51 -0.67 10.38 16 15 N -0.55 -12.73 6.04 -13.41 -0.08 -12.81 16 16 C 0.32 6.73 10.68 -92.36 -0.99 5.74 16 17 N -0.53 -11.22 10.49 -13.53 -0.14 -11.36 16 18 C 0.10 2.04 7.67 -16.24 -0.12 1.92 16 19 S 0.14 2.37 23.23 -107.50 -2.50 -0.13 16 20 C -0.23 -3.94 7.25 -35.26 -0.26 -4.19 16 21 C -0.04 -0.74 6.61 -102.13 -0.67 -1.41 16 22 C -0.17 -3.67 6.08 -104.82 -0.64 -4.30 16 23 C -0.05 -0.87 6.82 -26.21 -0.18 -1.05 16 24 C -0.12 -1.47 7.13 -25.55 -0.18 -1.65 16 25 C -0.03 -0.43 6.82 -26.34 -0.18 -0.61 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.19 3.13 8.06 -52.49 -0.42 2.71 16 37 H 0.08 1.27 8.14 -51.92 -0.42 0.84 16 38 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -30.37 350.97 -11.48 -41.86 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.43 Total: -1.82 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -4.09 Total: -4.26 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.30 Total: -60.39 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.06 Total: 19.46 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.50 Total: -0.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.37 -11.48 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.719 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds