Wall clock time and date at job start Tue Mar 31 2020 12:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 C 1.52998 * 109.47169 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46891 * 180.02562 * 4 3 2 6 6 C 1.36905 * 119.99837 * 274.71438 * 5 4 3 7 7 H 1.07997 * 120.00414 * 326.62676 * 6 5 4 8 8 C 1.38822 * 119.99822 * 146.62531 * 6 5 4 9 9 N 1.31551 * 120.00237 * 154.57395 * 8 6 5 10 10 Si 1.86801 * 119.99990 * 334.57456 * 8 6 5 11 11 H 1.48500 * 109.47348 * 89.37292 * 10 8 6 12 12 H 1.48501 * 109.47306 * 209.37018 * 10 8 6 13 13 H 1.48497 * 109.47380 * 329.37131 * 10 8 6 14 14 C 1.38194 * 120.00208 * 94.72095 * 5 4 3 15 15 N 1.32658 * 120.65321 * 276.52247 * 14 5 4 16 16 C 1.31984 * 121.13929 * 180.30827 * 15 14 5 17 17 N 1.31365 * 122.31663 * 359.72848 * 16 15 14 18 18 C 1.34005 * 120.89786 * 0.02562 * 17 16 15 19 19 S 1.75384 * 131.30973 * 179.97438 * 18 17 16 20 20 C 1.76329 * 92.45744 * 179.97438 * 19 18 17 21 21 C 1.32639 * 111.35653 * 0.02562 * 20 19 18 22 22 C 1.39209 * 119.08987 * 359.96294 * 18 17 16 23 23 C 1.52872 * 110.17664 * 179.97438 * 21 20 19 24 24 C 1.54128 * 104.90940 * 17.57099 * 23 21 20 25 25 C 1.52599 * 138.13469 * 180.02562 * 20 19 18 26 26 H 1.09006 * 109.46876 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47262 * 299.99726 * 1 2 3 28 28 H 1.08998 * 109.47292 * 60.00568 * 1 2 3 29 29 H 1.09003 * 109.47551 * 239.99934 * 2 1 3 30 30 H 1.09009 * 109.47159 * 119.99893 * 2 1 3 31 31 H 1.08997 * 109.46805 * 59.99994 * 3 2 1 32 32 H 1.08997 * 109.47262 * 299.99666 * 3 2 1 33 33 H 1.08997 * 109.47262 * 60.00274 * 4 3 2 34 34 H 1.08998 * 109.47292 * 299.99432 * 4 3 2 35 35 H 0.97002 * 119.99989 * 179.97438 * 9 8 6 36 36 H 1.08000 * 118.83997 * 179.70934 * 16 15 14 37 37 H 1.09010 * 110.34829 * 136.42761 * 23 21 20 38 38 H 1.08998 * 110.35392 * 258.60176 * 23 21 20 39 39 H 1.08995 * 111.00439 * 91.47993 * 24 23 21 40 40 H 1.08996 * 111.00788 * 215.29782 * 24 23 21 41 41 H 1.08997 * 110.36416 * 43.60218 * 25 20 19 42 42 H 1.08995 * 110.45780 * 281.33606 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.1940 3.5023 -1.1813 7 1 4.4751 2.9723 -2.0793 8 6 3.9703 4.8717 -1.2248 9 7 4.5498 5.6037 -2.1516 10 14 2.8465 5.6749 0.0326 11 1 3.6414 6.0799 1.2198 12 1 2.2082 6.8736 -0.5681 13 1 1.7963 4.7097 0.4459 14 6 4.3819 3.4417 1.1929 15 7 3.4426 4.0130 1.9353 16 6 3.7418 4.6111 3.0732 17 7 4.9707 4.6701 3.5336 18 6 5.9866 4.1175 2.8565 19 16 7.7029 4.0347 3.2076 20 6 8.0395 3.1366 1.7280 21 6 6.9319 2.9224 1.0304 22 6 5.7251 3.4740 1.6501 23 6 7.2544 2.1437 -0.2450 24 6 8.6475 1.5332 0.0046 25 6 9.2456 2.5314 1.0154 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 4.3932 6.5605 -2.1822 36 1 2.9484 5.0683 3.6458 37 1 6.5182 1.3557 -0.4044 38 1 7.2813 2.8155 -1.1029 39 1 8.5653 0.5377 0.4408 40 1 9.2333 1.5079 -0.9142 41 1 9.8861 2.0122 1.7282 42 1 9.8087 3.3060 0.4949 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:10 Heat of formation + Delta-G solvation = 76.635089 kcal Electronic energy + Delta-G solvation = -25185.575461 eV Core-core repulsion = 21871.191415 eV Total energy + Delta-G solvation = -3314.384046 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.18605 -39.49995 -38.51727 -35.76382 -34.76491 -34.16720 -33.07562 -30.08319 -29.34232 -28.76989 -26.71040 -25.35869 -24.99384 -23.05477 -22.03304 -21.60329 -20.44818 -20.22498 -18.71794 -18.00016 -17.51702 -17.37408 -16.52063 -16.36295 -15.95022 -15.83465 -15.75470 -15.02135 -14.81500 -14.34536 -13.99077 -13.86169 -13.63948 -13.62492 -13.55279 -13.32836 -12.95600 -12.76843 -12.54137 -12.49461 -12.13551 -12.00793 -12.00316 -11.92911 -11.85943 -11.78430 -11.49657 -11.34976 -11.17952 -10.83408 -10.20371 -9.76890 -9.33701 -8.92412 -8.44772 -5.79563 -0.57071 -0.19037 0.02180 0.82998 1.09772 1.28427 1.34522 1.65540 2.29405 2.48657 2.67726 2.93516 3.20502 3.37711 3.49034 3.71067 3.90363 4.07937 4.10269 4.23468 4.25300 4.29238 4.37546 4.45136 4.69142 4.72715 4.83420 4.87958 4.91461 4.96011 5.01106 5.03794 5.09001 5.10903 5.15758 5.20657 5.35358 5.40722 5.44777 5.46745 5.57982 5.71233 5.82914 5.97334 6.71333 6.97659 7.37675 7.65303 8.68886 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.006290 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.318334 B = 4450.632805 C = 4869.452898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.130 4.130 4 C 0.147 3.853 5 N -0.542 5.542 6 C -0.237 4.237 7 H 0.086 0.914 8 C -0.004 4.004 9 N -0.913 5.913 10 Si 0.943 3.057 11 H -0.309 1.309 12 H -0.333 1.333 13 H -0.248 1.248 14 C 0.474 3.526 15 N -0.572 5.572 16 C 0.308 3.692 17 N -0.521 5.521 18 C 0.059 3.941 19 S 0.197 5.803 20 C -0.211 4.211 21 C -0.082 4.082 22 C -0.184 4.184 23 C -0.050 4.050 24 C -0.105 4.105 25 C -0.034 4.034 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.264 0.736 36 H 0.221 0.779 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.140 -11.517 7.272 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.170 4.170 4 C 0.024 3.976 5 N -0.259 5.259 6 C -0.366 4.366 7 H 0.103 0.897 8 C -0.204 4.204 9 N -0.554 5.554 10 Si 0.779 3.221 11 H -0.238 1.238 12 H -0.265 1.265 13 H -0.172 1.172 14 C 0.231 3.769 15 N -0.296 5.296 16 C 0.016 3.984 17 N -0.240 5.240 18 C -0.190 4.190 19 S 0.458 5.542 20 C -0.326 4.326 21 C -0.094 4.094 22 C -0.201 4.201 23 C -0.090 4.090 24 C -0.143 4.143 25 C -0.073 4.073 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.237 0.763 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.389 -10.470 8.896 15.151 hybrid contribution -1.629 0.852 -1.110 2.148 sum 4.760 -9.617 7.786 13.258 Atomic orbital electron populations 1.21741 0.95512 1.02050 1.01265 1.21438 0.96256 0.95084 1.02393 1.22033 0.96909 0.97356 1.00688 1.21367 0.93082 0.82234 1.00906 1.41636 1.72650 1.12365 0.99215 1.18675 1.40731 0.90462 0.86726 0.89689 1.25887 0.98791 0.97651 0.98103 1.69935 1.41697 1.06174 1.37556 0.85782 0.82779 0.76686 0.76889 1.23840 1.26486 1.17236 1.18562 0.86303 0.86181 0.85836 1.68328 1.39401 1.13055 1.08774 1.25072 0.92544 0.91720 0.89049 1.68113 0.99657 1.21325 1.34884 1.24145 1.01474 0.98699 0.94682 1.83305 0.92524 1.57881 1.20525 1.26116 1.01792 1.05936 0.98802 1.21187 0.89268 1.00407 0.98500 1.21054 0.96932 1.05200 0.96903 1.21038 0.98271 0.97629 0.92029 1.22350 0.93470 0.98559 0.99959 1.21077 0.91716 0.97993 0.96525 0.91080 0.93644 0.93350 0.90968 0.91611 0.94269 0.93661 0.90413 0.92745 0.92731 0.76289 0.91097 0.91877 0.89080 0.87801 0.87759 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.91 71.98 0.71 -2.79 16 2 C -0.11 -2.95 5.93 30.59 0.18 -2.77 16 3 C -0.13 -4.59 5.52 30.59 0.17 -4.42 16 4 C 0.15 5.42 5.66 86.38 0.49 5.91 16 5 N -0.54 -24.78 2.21 -515.72 -1.14 -25.92 16 6 C -0.24 -12.53 9.89 84.04 0.83 -11.69 16 7 H 0.09 4.66 8.06 -2.91 -0.02 4.64 16 8 C 0.00 -0.22 5.29 84.87 0.45 0.23 16 9 N -0.91 -55.45 13.96 21.65 0.30 -55.15 16 10 Si 0.94 50.90 23.86 68.60 1.64 52.53 16 11 H -0.31 -16.99 5.36 99.48 0.53 -16.46 16 12 H -0.33 -18.54 7.11 99.48 0.71 -17.84 16 13 H -0.25 -13.14 6.78 99.48 0.67 -12.46 16 14 C 0.47 22.15 4.33 133.96 0.58 22.73 16 15 N -0.57 -26.52 6.04 -196.35 -1.19 -27.71 16 16 C 0.31 12.75 10.68 180.96 1.93 14.68 16 17 N -0.52 -21.75 10.49 -196.72 -2.06 -23.81 16 18 C 0.06 2.45 7.67 84.60 0.65 3.10 16 19 S 0.20 6.25 23.23 -56.49 -1.31 4.94 16 20 C -0.21 -6.48 7.25 25.13 0.18 -6.30 16 21 C -0.08 -3.07 6.61 -18.19 -0.12 -3.19 16 22 C -0.18 -8.05 6.08 -19.99 -0.12 -8.18 16 23 C -0.05 -1.60 6.82 30.93 0.21 -1.39 16 24 C -0.10 -2.15 7.13 31.36 0.22 -1.92 16 25 C -0.03 -0.71 6.82 30.85 0.21 -0.50 16 26 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 2.64 8.08 -2.39 -0.02 2.62 16 34 H 0.05 1.87 8.00 -2.39 -0.02 1.85 16 35 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.22 7.17 8.06 -2.91 -0.02 7.15 16 37 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -69.68 350.97 3.62 -66.05 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 0.81 Total: 5.57 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 6.58 Total: 3.49 kcal Atomic # 7 Polarization: -128.50 SS G_CDS: -4.09 Total: -132.59 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 1.64 Total: 52.53 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.31 Total: 4.94 kcal Total: -69.68 3.62 -66.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.689 kcal (2) G-P(sol) polarization free energy of solvation -69.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds