Wall clock time and date at job start Tue Mar 31 2020 12:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 C 1.52994 * 109.47001 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47239 * 180.02562 * 4 3 2 6 6 C 1.36934 * 120.00033 * 270.00467 * 5 4 3 7 7 H 1.08004 * 120.00392 * 145.56608 * 6 5 4 8 8 C 1.38854 * 120.00073 * 325.56126 * 6 5 4 9 9 N 1.31542 * 119.99563 * 337.50523 * 8 6 5 10 10 Si 1.86798 * 120.00304 * 157.50568 * 8 6 5 11 11 H 1.48497 * 109.47129 * 59.99864 * 10 8 6 12 12 H 1.48498 * 109.46973 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46849 * 300.00009 * 10 8 6 14 14 C 1.38528 * 119.99965 * 90.00012 * 5 4 3 15 15 C 1.39805 * 120.47691 * 171.31244 * 14 5 4 16 16 C 1.38256 * 118.54676 * 179.97438 * 15 14 5 17 17 C 1.50697 * 120.33506 * 179.72415 * 16 15 14 18 18 N 1.32370 * 119.32692 * 359.97438 * 16 15 14 19 19 C 1.32866 * 120.91574 * 0.02562 * 18 16 15 20 20 C 1.47534 * 119.20853 * 180.02562 * 19 18 16 21 21 C 1.34956 * 125.27684 * 359.69855 * 20 19 18 22 22 C 1.37737 * 114.72241 * 179.79597 * 21 20 19 23 23 C 1.33786 * 115.08007 * 0.49860 * 22 21 20 24 24 S 1.75863 * 109.74654 * 359.73265 * 23 22 21 25 25 N 1.32825 * 121.58213 * 359.97438 * 19 18 16 26 26 H 1.08996 * 109.46742 * 299.99856 * 1 2 3 27 27 H 1.08997 * 109.47563 * 59.99805 * 1 2 3 28 28 H 1.09001 * 109.46751 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46742 * 240.00144 * 2 1 3 30 30 H 1.09003 * 109.46911 * 120.00134 * 2 1 3 31 31 H 1.09003 * 109.47080 * 60.00052 * 3 2 1 32 32 H 1.08997 * 109.47073 * 300.00495 * 3 2 1 33 33 H 1.09003 * 109.47288 * 60.00024 * 4 3 2 34 34 H 1.08997 * 109.47485 * 300.00088 * 4 3 2 35 35 H 0.97007 * 119.99241 * 175.69634 * 9 8 6 36 36 H 1.08003 * 120.72822 * 359.97438 * 15 14 5 37 37 H 1.09002 * 109.47158 * 89.99887 * 17 16 15 38 38 H 1.09008 * 109.46987 * 209.99565 * 17 16 15 39 39 H 1.08992 * 109.47316 * 329.99233 * 17 16 15 40 40 H 1.08002 * 122.63626 * 359.97438 * 21 20 19 41 41 H 1.07998 * 122.46067 * 180.23367 * 22 21 20 42 42 H 1.07994 * 125.12502 * 179.71468 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2861 3.4699 -1.1856 7 1 4.1001 4.5307 -1.2669 8 6 4.7561 2.7615 -2.2834 9 7 5.3924 1.6236 -2.1084 10 14 4.4847 3.4242 -4.0087 11 1 5.1329 4.7541 -4.1358 12 1 5.0769 2.4877 -4.9974 13 1 3.0279 3.5571 -4.2644 14 6 4.2898 3.4760 1.2000 15 6 4.9235 4.7221 1.2190 16 6 5.1339 5.3377 2.4389 17 6 5.8187 6.6784 2.5068 18 7 4.7322 4.7352 3.5470 19 6 4.1322 3.5507 3.5009 20 6 3.6994 2.9135 4.7592 21 6 3.8651 3.4335 5.9935 22 6 3.3736 2.6545 7.0175 23 6 2.8176 1.4994 6.6348 24 16 2.8940 1.3546 4.8838 25 7 3.9118 2.9268 2.3492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9338 0.9285 0.8891 35 1 5.6658 1.0978 -2.8764 36 1 5.2416 5.1934 0.3008 37 1 5.0730 7.4709 2.4434 38 1 6.3594 6.7628 3.4495 39 1 6.5189 6.7711 1.6767 40 1 4.3429 4.3869 6.1645 41 1 3.4364 2.9523 8.0538 42 1 2.3870 0.7663 7.3007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:24 Heat of formation + Delta-G solvation = 72.463098 kcal Electronic energy + Delta-G solvation = -24032.930352 eV Core-core repulsion = 20718.365396 eV Total energy + Delta-G solvation = -3314.564957 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.85169 -37.48134 -36.78698 -34.22094 -33.36725 -32.43424 -30.60534 -28.88578 -28.59093 -26.96689 -25.33432 -24.26620 -22.90362 -21.89508 -20.79112 -20.25334 -18.84036 -17.79784 -16.85386 -16.31945 -15.80658 -15.08278 -14.82313 -14.60815 -14.32071 -14.01983 -13.63518 -13.50538 -13.35418 -12.89337 -12.48647 -12.43775 -12.28326 -12.20639 -12.03564 -11.84144 -11.74212 -11.63806 -11.52209 -11.23134 -10.72143 -10.53648 -10.49475 -10.44564 -10.36434 -10.00021 -9.77257 -9.56484 -9.22636 -8.96777 -8.18432 -8.14906 -7.97536 -7.14248 -6.50219 -4.14901 0.88975 1.88598 2.21718 2.36017 2.44704 3.04547 3.10460 3.11995 3.18774 3.86750 4.41878 4.62087 4.76055 5.02195 5.12372 5.23903 5.46006 5.49316 5.62142 5.63397 5.77903 5.84537 5.94215 6.00788 6.04703 6.21911 6.22600 6.27433 6.34336 6.35556 6.38163 6.47466 6.51579 6.65899 6.68059 6.70205 6.78175 6.81370 6.99094 7.18358 7.33943 7.43127 7.87470 8.07151 8.49071 9.04997 9.10771 9.59014 10.40002 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.004962 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.733190 B = 5641.244471 C = 7579.028892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.126 4.126 4 C 0.116 3.884 5 N -0.398 5.398 6 C -0.316 4.316 7 H 0.093 0.907 8 C 0.043 3.957 9 N -0.848 5.848 10 Si 0.921 3.079 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.271 1.271 14 C 0.395 3.605 15 C -0.286 4.286 16 C 0.178 3.822 17 C -0.093 4.093 18 N -0.587 5.587 19 C 0.406 3.594 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.139 4.139 23 C -0.237 4.237 24 S 0.170 5.830 25 N -0.588 5.588 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.273 0.727 36 H 0.134 0.866 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.148 0.852 41 H 0.137 0.863 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 -0.011 8.596 9.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.164 4.164 4 C -0.008 4.008 5 N -0.087 5.087 6 C -0.445 4.445 7 H 0.111 0.889 8 C -0.165 4.165 9 N -0.482 5.482 10 Si 0.746 3.254 11 H -0.194 1.194 12 H -0.206 1.206 13 H -0.196 1.196 14 C 0.149 3.851 15 C -0.317 4.317 16 C 0.039 3.961 17 C -0.151 4.151 18 N -0.313 5.313 19 C 0.137 3.863 20 C -0.231 4.231 21 C -0.140 4.140 22 C -0.170 4.170 23 C -0.374 4.374 24 S 0.434 5.566 25 N -0.317 5.317 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.061 -1.806 7.860 9.521 hybrid contribution 0.615 1.663 -0.670 1.895 sum -4.446 -0.143 7.190 8.455 Atomic orbital electron populations 1.21749 0.96584 1.00685 1.01488 1.21417 0.95040 0.97611 1.01569 1.21885 0.97500 0.95578 1.01474 1.21596 0.91649 0.83713 1.03795 1.42445 1.54058 1.11636 1.00600 1.19449 1.43428 0.95675 0.85957 0.88935 1.25405 0.93658 0.96812 1.00662 1.70016 1.31339 1.14596 1.32254 0.86083 0.79106 0.79059 0.81105 1.19440 1.20631 1.19591 1.18749 0.89858 0.90417 0.86037 1.21786 1.11246 0.99404 0.99270 1.20956 0.92105 0.94938 0.88084 1.20571 0.99610 0.92168 1.02710 1.68001 1.20797 1.11157 1.31378 1.19473 0.90977 0.87314 0.88582 1.22265 1.07652 0.98988 0.94230 1.20340 1.01682 1.01834 0.90191 1.20015 1.01895 0.94803 1.00325 1.25957 1.09184 1.02805 0.99477 1.84455 1.55506 1.16717 0.99872 1.67835 1.28946 1.37623 0.97332 0.93030 0.93119 0.93395 0.92370 0.92291 0.92644 0.92466 0.87475 0.92493 0.91624 0.84856 0.91045 0.91120 0.91067 0.83477 0.84575 0.82164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -1.93 5.93 -26.73 -0.16 -2.09 16 3 C -0.13 -2.49 5.54 -26.73 -0.15 -2.64 16 4 C 0.12 2.65 4.97 -4.04 -0.02 2.63 16 5 N -0.40 -9.78 2.64 -114.85 -0.30 -10.08 16 6 C -0.32 -7.84 8.42 -15.04 -0.13 -7.97 16 7 H 0.09 2.25 7.10 -52.48 -0.37 1.87 16 8 C 0.04 1.03 4.96 -17.45 -0.09 0.94 16 9 N -0.85 -21.48 11.31 55.49 0.63 -20.85 16 10 Si 0.92 18.78 29.61 -169.99 -5.03 13.75 16 11 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 12 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 13 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 14 C 0.40 9.58 7.32 -154.84 -1.13 8.44 16 15 C -0.29 -6.42 9.00 -38.99 -0.35 -6.77 16 16 C 0.18 3.61 6.81 -82.36 -0.56 3.05 16 17 C -0.09 -1.41 10.21 36.00 0.37 -1.04 16 18 N -0.59 -12.41 9.90 -7.59 -0.08 -12.48 16 19 C 0.41 8.83 7.58 -156.86 -1.19 7.64 16 20 C -0.11 -2.07 6.42 -36.96 -0.24 -2.30 16 21 C -0.11 -1.69 9.81 -40.93 -0.40 -2.09 16 22 C -0.14 -1.80 10.16 -41.33 -0.42 -2.22 16 23 C -0.24 -2.99 11.23 29.17 0.33 -2.67 16 24 S 0.17 2.68 23.06 -107.50 -2.48 0.20 16 25 N -0.59 -13.66 9.06 -10.48 -0.09 -13.76 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.11 2.61 5.33 -51.93 -0.28 2.33 16 34 H 0.06 1.34 7.55 -51.93 -0.39 0.94 16 35 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 36 H 0.13 2.92 6.73 -52.48 -0.35 2.57 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 39 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 40 H 0.15 2.24 7.95 -52.49 -0.42 1.83 16 41 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 365.65 15.07 5.51 5.51 Total: -1.00 -27.61 365.65 -11.64 -39.24 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.02 Total: 7.24 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -3.77 Total: -8.78 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.15 Total: -57.17 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.48 Total: 0.20 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.61 -11.64 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.706 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds