Wall clock time and date at job start Tue Mar 31 2020 12:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 C 1.52994 * 109.47001 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47239 * 180.02562 * 4 3 2 6 6 C 1.36934 * 120.00033 * 270.00467 * 5 4 3 7 7 H 1.08004 * 120.00392 * 145.56608 * 6 5 4 8 8 C 1.38854 * 120.00073 * 325.56126 * 6 5 4 9 9 N 1.31542 * 119.99563 * 337.50523 * 8 6 5 10 10 Si 1.86798 * 120.00304 * 157.50568 * 8 6 5 11 11 H 1.48497 * 109.47129 * 59.99864 * 10 8 6 12 12 H 1.48498 * 109.46973 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46849 * 300.00009 * 10 8 6 14 14 C 1.38528 * 119.99965 * 90.00012 * 5 4 3 15 15 C 1.39805 * 120.47691 * 171.31244 * 14 5 4 16 16 C 1.38256 * 118.54676 * 179.97438 * 15 14 5 17 17 C 1.50697 * 120.33506 * 179.72415 * 16 15 14 18 18 N 1.32370 * 119.32692 * 359.97438 * 16 15 14 19 19 C 1.32866 * 120.91574 * 0.02562 * 18 16 15 20 20 C 1.47534 * 119.20853 * 180.02562 * 19 18 16 21 21 C 1.34956 * 125.27684 * 359.69855 * 20 19 18 22 22 C 1.37737 * 114.72241 * 179.79597 * 21 20 19 23 23 C 1.33786 * 115.08007 * 0.49860 * 22 21 20 24 24 S 1.75863 * 109.74654 * 359.73265 * 23 22 21 25 25 N 1.32825 * 121.58213 * 359.97438 * 19 18 16 26 26 H 1.08996 * 109.46742 * 299.99856 * 1 2 3 27 27 H 1.08997 * 109.47563 * 59.99805 * 1 2 3 28 28 H 1.09001 * 109.46751 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46742 * 240.00144 * 2 1 3 30 30 H 1.09003 * 109.46911 * 120.00134 * 2 1 3 31 31 H 1.09003 * 109.47080 * 60.00052 * 3 2 1 32 32 H 1.08997 * 109.47073 * 300.00495 * 3 2 1 33 33 H 1.09003 * 109.47288 * 60.00024 * 4 3 2 34 34 H 1.08997 * 109.47485 * 300.00088 * 4 3 2 35 35 H 0.97007 * 119.99241 * 175.69634 * 9 8 6 36 36 H 1.08003 * 120.72822 * 359.97438 * 15 14 5 37 37 H 1.09002 * 109.47158 * 89.99887 * 17 16 15 38 38 H 1.09008 * 109.46987 * 209.99565 * 17 16 15 39 39 H 1.08992 * 109.47316 * 329.99233 * 17 16 15 40 40 H 1.08002 * 122.63626 * 359.97438 * 21 20 19 41 41 H 1.07998 * 122.46067 * 180.23367 * 22 21 20 42 42 H 1.07994 * 125.12502 * 179.71468 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2861 3.4699 -1.1856 7 1 4.1001 4.5307 -1.2669 8 6 4.7561 2.7615 -2.2834 9 7 5.3924 1.6236 -2.1084 10 14 4.4847 3.4242 -4.0087 11 1 5.1329 4.7541 -4.1358 12 1 5.0769 2.4877 -4.9974 13 1 3.0279 3.5571 -4.2644 14 6 4.2898 3.4760 1.2000 15 6 4.9235 4.7221 1.2190 16 6 5.1339 5.3377 2.4389 17 6 5.8187 6.6784 2.5068 18 7 4.7322 4.7352 3.5470 19 6 4.1322 3.5507 3.5009 20 6 3.6994 2.9135 4.7592 21 6 3.8651 3.4335 5.9935 22 6 3.3736 2.6545 7.0175 23 6 2.8176 1.4994 6.6348 24 16 2.8940 1.3546 4.8838 25 7 3.9118 2.9268 2.3492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9338 0.9285 0.8891 35 1 5.6658 1.0978 -2.8764 36 1 5.2416 5.1934 0.3008 37 1 5.0730 7.4709 2.4434 38 1 6.3594 6.7628 3.4495 39 1 6.5189 6.7711 1.6767 40 1 4.3429 4.3869 6.1645 41 1 3.4364 2.9523 8.0538 42 1 2.3870 0.7663 7.3007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:23 Heat of formation + Delta-G solvation = 60.866179 kcal Electronic energy + Delta-G solvation = -24033.433232 eV Core-core repulsion = 20718.365396 eV Total energy + Delta-G solvation = -3315.067837 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52480 -38.91298 -38.27721 -35.70616 -34.99178 -34.14823 -32.23786 -30.30507 -30.01441 -28.46733 -27.05490 -25.63920 -24.45499 -23.33629 -22.31473 -21.86539 -20.17961 -19.34969 -18.37956 -17.93371 -17.53431 -16.51437 -16.29681 -16.09346 -15.95244 -15.68578 -15.31272 -14.95088 -14.70694 -14.11052 -13.92808 -13.83011 -13.61323 -13.56959 -13.43161 -13.21775 -13.17464 -13.05321 -12.91513 -12.86489 -12.28500 -12.10092 -12.00803 -11.90802 -11.60454 -11.60267 -11.41936 -11.29837 -10.86283 -10.61109 -9.85624 -9.44262 -9.38964 -8.91011 -8.32528 -6.05149 -0.44312 0.66165 0.67403 0.83254 1.20898 1.41036 1.45980 1.52212 1.93093 2.17307 2.74685 2.83356 3.20785 3.31483 3.61113 4.05928 4.11979 4.24951 4.27532 4.32591 4.46152 4.51625 4.58326 4.72807 4.77709 4.80410 4.81937 4.83033 4.86639 4.96482 4.99113 5.10594 5.15270 5.16081 5.23615 5.30166 5.36189 5.40688 5.43025 5.54620 5.58909 5.78398 6.06081 6.32301 6.68045 7.21746 7.37301 7.80440 8.57732 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.004962 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.733190 B = 5641.244471 C = 7579.028892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.110 4.110 4 C 0.125 3.875 5 N -0.417 5.417 6 C -0.335 4.335 7 H 0.089 0.911 8 C 0.006 3.994 9 N -0.882 5.882 10 Si 0.986 3.014 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.267 1.267 14 C 0.376 3.624 15 C -0.316 4.316 16 C 0.182 3.818 17 C -0.087 4.087 18 N -0.591 5.591 19 C 0.398 3.602 20 C -0.167 4.167 21 C -0.085 4.085 22 C -0.145 4.145 23 C -0.200 4.200 24 S 0.136 5.864 25 N -0.605 5.605 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.039 0.961 35 H 0.276 0.724 36 H 0.130 0.870 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.150 0.850 41 H 0.177 0.823 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.312 0.315 10.579 11.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.149 4.149 4 C 0.001 3.999 5 N -0.109 5.109 6 C -0.463 4.463 7 H 0.106 0.894 8 C -0.199 4.199 9 N -0.517 5.517 10 Si 0.809 3.191 11 H -0.188 1.188 12 H -0.202 1.202 13 H -0.192 1.192 14 C 0.130 3.870 15 C -0.347 4.347 16 C 0.042 3.958 17 C -0.144 4.144 18 N -0.317 5.317 19 C 0.129 3.871 20 C -0.286 4.286 21 C -0.120 4.120 22 C -0.174 4.174 23 C -0.337 4.337 24 S 0.401 5.599 25 N -0.334 5.334 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.168 0.832 41 H 0.194 0.806 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.932 -1.471 9.866 11.606 hybrid contribution 0.906 1.576 -0.979 2.064 sum -5.026 0.105 8.888 10.211 Atomic orbital electron populations 1.21699 0.94232 1.02358 1.01596 1.21390 0.97041 0.94959 1.01760 1.21729 0.95399 0.97769 1.00004 1.21472 0.93370 0.83137 1.01902 1.42609 1.55419 1.12081 1.00780 1.19627 1.44164 0.95847 0.86693 0.89354 1.26205 0.92914 0.96912 1.03830 1.70105 1.32468 1.15876 1.33256 0.85093 0.78975 0.78563 0.76463 1.18778 1.20241 1.19246 1.19195 0.90079 0.91190 0.86493 1.21898 1.12978 0.99595 1.00221 1.21749 0.90612 0.96339 0.87054 1.20681 1.00095 0.89568 1.04099 1.68168 1.20924 1.11124 1.31436 1.20210 0.89974 0.87486 0.89411 1.22308 1.11532 1.00973 0.93835 1.20643 0.99630 1.01756 0.89958 1.20341 1.01359 0.94299 1.01426 1.26435 1.06810 1.03081 0.97389 1.84532 1.55868 1.16055 1.03454 1.67901 1.29730 1.38210 0.97583 0.92992 0.92963 0.90911 0.92222 0.92040 0.94107 0.93622 0.89103 0.94232 0.91451 0.85182 0.88930 0.89630 0.89700 0.83234 0.80554 0.78126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.08 16 2 C -0.11 -3.75 5.93 30.60 0.18 -3.57 16 3 C -0.11 -4.58 5.54 30.59 0.17 -4.41 16 4 C 0.12 6.06 4.97 86.38 0.43 6.48 16 5 N -0.42 -21.74 2.64 -517.27 -1.36 -23.10 16 6 C -0.33 -17.40 8.42 84.04 0.71 -16.70 16 7 H 0.09 4.51 7.10 -2.91 -0.02 4.49 16 8 C 0.01 0.30 4.96 84.88 0.42 0.72 16 9 N -0.88 -46.43 11.31 21.65 0.24 -46.19 16 10 Si 0.99 39.26 29.61 68.60 2.03 41.29 16 11 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 12 H -0.28 -10.77 7.11 99.48 0.71 -10.07 16 13 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 14 C 0.38 19.20 7.32 133.25 0.98 20.18 16 15 C -0.32 -14.79 9.00 22.65 0.20 -14.59 16 16 C 0.18 7.46 6.81 42.48 0.29 7.74 16 17 C -0.09 -2.52 10.21 71.23 0.73 -1.79 16 18 N -0.59 -25.16 9.90 -177.94 -1.76 -26.92 16 19 C 0.40 17.76 7.58 137.15 1.04 18.79 16 20 C -0.17 -6.18 6.42 23.97 0.15 -6.02 16 21 C -0.09 -2.52 9.81 21.40 0.21 -2.31 16 22 C -0.14 -3.17 10.16 21.14 0.21 -2.96 16 23 C -0.20 -4.31 11.23 66.81 0.75 -3.56 16 24 S 0.14 4.23 23.06 -56.49 -1.30 2.92 16 25 N -0.61 -29.51 9.06 -187.06 -1.70 -31.21 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 4.70 5.33 -2.39 -0.01 4.69 16 34 H 0.04 1.99 7.55 -2.39 -0.02 1.97 16 35 H 0.28 13.58 8.32 -92.70 -0.77 12.81 16 36 H 0.13 6.00 6.73 -2.91 -0.02 5.98 16 37 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.08 2.23 8.09 -2.39 -0.02 2.21 16 40 H 0.15 4.28 7.95 -2.91 -0.02 4.26 16 41 H 0.18 2.52 8.06 -2.91 -0.02 2.49 16 42 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -63.84 365.65 4.36 -59.48 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 1.01 Total: 28.80 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 7.19 Total: -5.07 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -4.57 Total: -127.42 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.30 Total: 2.92 kcal Total: -63.84 4.36 -59.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.346 kcal (2) G-P(sol) polarization free energy of solvation -63.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds