Wall clock time and date at job start Tue Mar 31 2020 12:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47407 * 2 1 4 4 C 1.53000 * 109.47407 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47459 * 179.97438 * 4 3 2 6 6 C 1.36846 * 120.00302 * 270.00047 * 5 4 3 7 7 H 1.08001 * 120.00058 * 6.05443 * 6 5 4 8 8 C 1.38918 * 120.00348 * 186.05583 * 6 5 4 9 9 N 1.31472 * 119.99618 * 6.60589 * 8 6 5 10 10 Si 1.86799 * 120.00209 * 186.60003 * 8 6 5 11 11 H 1.48505 * 109.46843 * 90.00267 * 10 8 6 12 12 H 1.48501 * 109.47225 * 210.00338 * 10 8 6 13 13 H 1.48502 * 109.46992 * 330.00707 * 10 8 6 14 14 C 1.37843 * 119.99860 * 89.99798 * 5 4 3 15 15 N 1.32581 * 120.84799 * 263.57985 * 14 5 4 16 16 C 1.32990 * 121.42256 * 179.97438 * 15 14 5 17 17 S 1.76198 * 118.62114 * 179.97438 * 16 15 14 18 18 C 1.81001 * 100.00004 * 180.02562 * 17 16 15 19 19 N 1.32058 * 122.75667 * 359.97438 * 16 15 14 20 20 C 1.34073 * 120.41302 * 0.02562 * 19 16 15 21 21 C 1.40180 * 121.90597 * 179.97438 * 20 19 16 22 22 C 1.36349 * 119.58406 * 180.02562 * 21 20 19 23 23 C 1.39183 * 121.01145 * 0.02562 * 22 21 20 24 24 C 1.36443 * 120.90440 * 359.97438 * 23 22 21 25 25 C 1.39860 * 119.52996 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47155 * 300.01101 * 1 2 3 27 27 H 1.09000 * 109.46712 * 60.00202 * 1 2 3 28 28 H 1.08996 * 109.47338 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47490 * 239.99602 * 2 1 3 30 30 H 1.09002 * 109.46895 * 119.99281 * 2 1 3 31 31 H 1.09000 * 109.47120 * 59.99376 * 3 2 1 32 32 H 1.09002 * 109.46506 * 299.99519 * 3 2 1 33 33 H 1.09000 * 109.47155 * 59.98899 * 4 3 2 34 34 H 1.09000 * 109.46712 * 299.99798 * 4 3 2 35 35 H 0.97003 * 119.99940 * 175.00120 * 9 8 6 36 36 H 1.09005 * 109.47436 * 300.00253 * 18 17 16 37 37 H 1.08997 * 109.47475 * 59.99898 * 18 17 16 38 38 H 1.09002 * 109.47332 * 180.02562 * 18 17 16 39 39 H 1.08001 * 120.20735 * 0.02562 * 21 20 19 40 40 H 1.07998 * 119.48770 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.54510 * 180.02562 * 23 22 21 42 42 H 1.07997 * 120.23774 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.2861 3.4684 -1.1866 7 1 4.0142 2.9962 -2.1191 8 6 4.8669 4.7303 -1.1906 9 7 5.3164 5.2505 -0.0700 10 14 5.0095 5.6879 -2.7882 11 1 3.7937 6.5195 -2.9770 12 1 6.2061 6.5657 -2.7341 13 1 5.1419 4.7398 -3.9234 14 6 4.2887 3.4737 1.1922 15 7 3.3726 4.2754 1.7174 16 6 3.5824 4.9078 2.8684 17 16 2.3143 5.9563 3.4987 18 6 3.1089 6.5308 5.0201 19 7 4.7013 4.7830 3.5586 20 6 5.6899 3.9951 3.1120 21 6 6.8905 3.8402 3.8189 22 6 7.8650 3.0270 3.3206 23 6 7.6868 2.3474 2.1191 24 6 6.5306 2.4758 1.4061 25 6 5.5110 3.3023 1.8893 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6768 1.9562 -0.8901 33 1 3.9330 0.9286 -0.8908 34 1 3.9337 0.9285 0.8892 35 1 5.7866 6.0989 -0.0834 36 1 3.3344 5.6758 5.6576 37 1 4.0331 7.0530 4.7726 38 1 2.4377 7.2092 5.5468 39 1 7.0427 4.3618 4.7523 40 1 8.7895 2.9091 3.8663 41 1 8.4742 1.7090 1.7466 42 1 6.4039 1.9438 0.4749 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:19 Heat of formation + Delta-G solvation = 75.920711 kcal Electronic energy + Delta-G solvation = -24852.140587 eV Core-core repulsion = 21537.725564 eV Total energy + Delta-G solvation = -3314.415023 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.12903 -37.04897 -36.38822 -34.46377 -32.18138 -31.45636 -30.31001 -29.54314 -28.41553 -27.87268 -24.95733 -23.94070 -23.20989 -22.11941 -20.81143 -20.38722 -18.65798 -17.40946 -16.92556 -15.96302 -15.45686 -15.00293 -14.78644 -14.07959 -14.05499 -13.93495 -13.67156 -13.59296 -13.41775 -13.14452 -12.93333 -12.49868 -12.19570 -12.08650 -11.69496 -11.47200 -11.42427 -11.24574 -10.96570 -10.93764 -10.81356 -10.67036 -10.53237 -10.25744 -10.18076 -10.01314 -9.66777 -9.63662 -9.18927 -8.60332 -8.14967 -7.76798 -7.36624 -6.94184 -6.05136 -3.59009 1.26421 1.77980 2.00134 2.76279 2.92341 3.25185 3.30033 3.32925 3.86205 4.16901 4.67224 5.05929 5.17052 5.22463 5.30269 5.37357 5.47043 5.47623 5.52018 5.58882 5.61688 5.76652 5.82390 5.93386 6.05902 6.10969 6.14274 6.16633 6.18122 6.22772 6.32616 6.41800 6.49847 6.55242 6.72441 6.77576 6.92258 6.96751 7.13835 7.23238 7.43197 7.56341 7.94090 8.22777 8.88848 9.20475 9.44334 9.78304 10.93363 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008063 B = 0.006395 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3471.822823 B = 4377.410785 C = 4903.817205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.153 3.847 5 N -0.546 5.546 6 C -0.261 4.261 7 H 0.092 0.908 8 C 0.004 3.996 9 N -0.894 5.894 10 Si 0.929 3.071 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.594 3.406 15 N -0.545 5.545 16 C 0.344 3.656 17 S -0.044 6.044 18 C -0.134 4.134 19 N -0.567 5.567 20 C 0.178 3.822 21 C -0.128 4.128 22 C -0.092 4.092 23 C -0.167 4.167 24 C -0.034 4.034 25 C -0.128 4.128 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.268 0.732 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 -5.979 5.651 8.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.028 3.972 5 N -0.263 5.263 6 C -0.388 4.388 7 H 0.110 0.890 8 C -0.195 4.195 9 N -0.537 5.537 10 Si 0.759 3.241 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.202 1.202 14 C 0.343 3.657 15 N -0.268 5.268 16 C -0.036 4.036 17 S 0.189 5.811 18 C -0.304 4.304 19 N -0.290 5.290 20 C 0.050 3.950 21 C -0.148 4.148 22 C -0.113 4.113 23 C -0.186 4.186 24 C -0.054 4.054 25 C -0.138 4.138 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.760 -4.813 5.665 7.929 hybrid contribution 2.111 0.107 -0.799 2.260 sum -0.649 -4.706 4.866 6.800 Atomic orbital electron populations 1.21748 0.96385 1.00712 1.01818 1.21484 0.95493 0.97707 1.01281 1.22194 0.97737 0.95150 1.02826 1.20988 0.92494 0.83395 1.00308 1.41314 1.74426 1.09885 1.00672 1.19471 1.36073 0.99396 0.83897 0.88979 1.24957 0.98835 0.97581 0.98104 1.68930 1.40122 1.19872 1.24762 0.85847 0.77465 0.79614 0.81224 1.20990 1.21478 1.20192 1.17778 0.84752 0.80426 0.82724 1.68332 1.35881 1.12006 1.10574 1.24045 0.93598 0.95403 0.90505 1.85441 1.19371 1.52761 1.23556 1.23365 1.04437 1.04529 0.98039 1.68889 1.01717 1.22958 1.35445 1.18591 0.93036 0.91930 0.91444 1.20411 0.92428 1.01370 1.00570 1.20683 0.98083 0.96513 0.95988 1.20677 0.98332 1.03082 0.96497 1.20820 0.91973 0.94889 0.97752 1.19591 0.97116 1.00423 0.96667 0.92935 0.92868 0.93424 0.92345 0.92629 0.92146 0.91617 0.91630 0.93758 0.91848 0.89765 0.89652 0.88880 0.86164 0.86699 0.86867 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.65 5.93 -26.73 -0.16 -1.81 16 3 C -0.14 -2.42 5.54 -26.73 -0.15 -2.57 16 4 C 0.15 2.88 5.64 -4.05 -0.02 2.86 16 5 N -0.55 -12.74 1.88 -114.53 -0.22 -12.96 16 6 C -0.26 -6.55 9.78 -15.06 -0.15 -6.69 16 7 H 0.09 2.19 7.84 -52.49 -0.41 1.78 16 8 C 0.00 0.12 5.40 -17.45 -0.09 0.02 16 9 N -0.89 -24.84 9.83 55.50 0.55 -24.29 16 10 Si 0.93 21.30 29.56 -169.99 -5.03 16.28 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 14 C 0.59 14.63 3.66 -154.98 -0.57 14.06 16 15 N -0.54 -13.90 10.11 -12.38 -0.13 -14.03 16 16 C 0.34 8.10 7.84 -90.89 -0.71 7.39 16 17 S -0.04 -0.85 22.88 -107.50 -2.46 -3.31 16 18 C -0.13 -2.00 9.59 101.05 0.97 -1.03 16 19 N -0.57 -12.91 9.07 -11.50 -0.10 -13.02 16 20 C 0.18 4.03 6.61 -84.85 -0.56 3.47 16 21 C -0.13 -2.42 10.01 -39.53 -0.40 -2.81 16 22 C -0.09 -1.53 9.95 -39.91 -0.40 -1.93 16 23 C -0.17 -2.92 9.96 -39.88 -0.40 -3.31 16 24 C -0.03 -0.69 9.58 -39.62 -0.38 -1.07 16 25 C -0.13 -2.99 4.73 -106.64 -0.50 -3.49 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 34 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 35 H 0.27 7.57 8.32 -40.82 -0.34 7.23 16 36 H 0.08 1.24 8.10 -51.91 -0.42 0.82 16 37 H 0.08 1.35 8.10 -51.92 -0.42 0.93 16 38 H 0.09 1.08 8.14 -51.91 -0.42 0.66 16 39 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.13 2.58 7.65 -52.49 -0.40 2.17 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -29.92 364.18 -11.32 -41.24 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.27 Total: 3.00 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -3.15 Total: 1.60 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: 0.10 Total: -64.30 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -2.46 Total: -3.31 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.92 -11.32 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.161 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds