Wall clock time and date at job start Tue Mar 31 2020 12:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47409 * 2 1 4 4 C 1.52997 * 109.47266 * 239.99651 * 2 1 3 5 5 C 1.52997 * 109.47163 * 60.00166 * 4 2 1 6 6 O 1.42905 * 109.47519 * 179.97438 * 5 4 2 7 7 N 1.46502 * 109.46983 * 119.99997 * 2 1 3 8 8 C 1.38730 * 119.99891 * 302.67121 * 7 2 1 9 9 C 1.38754 * 120.29713 * 355.88585 * 8 7 2 10 10 C 1.38160 * 120.02624 * 179.97438 * 9 8 7 11 11 C 1.50706 * 119.68207 * 179.97438 * 10 9 8 12 12 F 1.39902 * 109.47321 * 89.99745 * 11 10 9 13 13 F 1.39904 * 109.46558 * 209.99513 * 11 10 9 14 14 F 1.39894 * 109.47096 * 329.99445 * 11 10 9 15 15 C 1.38895 * 120.63168 * 0.02562 * 10 9 8 16 16 C 1.36455 * 120.59401 * 359.69498 * 15 10 9 17 17 C 1.40732 * 119.94777 * 0.56191 * 16 15 10 18 18 C 1.41049 * 120.30235 * 179.73824 * 17 16 15 19 19 H 1.08000 * 120.00076 * 210.49160 * 18 17 16 20 20 C 1.39925 * 119.99856 * 30.49093 * 18 17 16 21 21 N 1.30877 * 120.00252 * 9.55763 * 20 18 17 22 22 Si 1.86799 * 119.99722 * 189.55024 * 20 18 17 23 23 H 1.48495 * 109.47600 * 265.02576 * 22 20 18 24 24 H 1.48506 * 109.47097 * 25.02809 * 22 20 18 25 25 H 1.48508 * 109.47015 * 145.02477 * 22 20 18 26 26 H 1.08993 * 109.47425 * 292.44226 * 1 2 3 27 27 H 1.09006 * 109.46940 * 52.44484 * 1 2 3 28 28 H 1.09001 * 109.47032 * 172.44137 * 1 2 3 29 29 H 1.08997 * 109.47018 * 189.45717 * 3 2 1 30 30 H 1.09000 * 109.46321 * 309.45730 * 3 2 1 31 31 H 1.08994 * 109.47052 * 69.45427 * 3 2 1 32 32 H 1.09000 * 109.47548 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47291 * 300.00189 * 4 2 1 34 34 H 1.08999 * 109.47165 * 300.00199 * 5 4 2 35 35 H 1.09004 * 109.47434 * 60.00058 * 5 4 2 36 36 H 0.96698 * 114.00094 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00377 * 122.67698 * 7 2 1 38 38 H 1.08004 * 119.98141 * 359.94374 * 9 8 7 39 39 H 1.07994 * 119.70641 * 179.97438 * 15 10 9 40 40 H 1.08002 * 120.02560 * 180.30277 * 16 15 10 41 41 H 0.97000 * 120.00186 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5301 -0.0001 -2.4984 6 8 2.0069 -0.6735 -3.6653 7 7 2.0183 -0.6906 1.1962 8 6 1.6380 -0.2498 2.4554 9 6 0.8653 0.8945 2.5927 10 6 0.4893 1.3281 3.8494 11 6 -0.3495 2.5723 3.9896 12 9 -1.7048 2.2272 3.9570 13 9 -0.0565 3.1974 5.2064 14 9 -0.0656 3.4472 2.9356 15 6 0.8779 0.6290 4.9850 16 6 1.6330 -0.5027 4.8793 17 6 2.0345 -0.9635 3.6116 18 6 2.8198 -2.1293 3.4941 19 1 3.5187 -2.2294 2.6768 20 6 2.6932 -3.1560 4.4363 21 7 1.7230 -3.1229 5.3140 22 14 3.9091 -4.5741 4.4412 23 1 3.3530 -5.7059 3.6570 24 1 5.1888 -4.1311 3.8316 25 1 4.1524 -5.0127 5.8390 26 1 -0.3634 0.3923 0.9497 27 1 -0.3633 0.6264 -0.8148 28 1 -0.3633 -1.0187 -0.1352 29 1 3.1168 1.4471 -0.1689 30 1 1.5454 2.0026 -0.7935 31 1 1.8211 1.9052 0.9622 32 1 3.1300 -0.7209 -1.2494 33 1 1.6767 -1.7490 -1.2491 34 1 0.4401 -0.0001 -2.4985 35 1 1.8934 1.0276 -2.4985 36 1 1.7213 -0.2702 -4.4964 37 1 2.6075 -1.4560 1.1078 38 1 0.5582 1.4466 1.7168 39 1 0.5759 0.9816 5.9600 40 1 1.9259 -1.0419 5.7680 41 1 1.6351 -3.8348 5.9669 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167741992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:01 Heat of formation + Delta-G solvation = -180.569214 kcal Electronic energy + Delta-G solvation = -27751.477473 eV Core-core repulsion = 23409.037850 eV Total energy + Delta-G solvation = -4342.439624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.33508 -46.88194 -46.80194 -39.26153 -37.44658 -36.05494 -33.92054 -32.31181 -30.33819 -28.43416 -28.00924 -26.99507 -26.67760 -23.75395 -23.32466 -21.17009 -20.36386 -18.96728 -17.79413 -17.67694 -17.45472 -17.34363 -17.30010 -15.50878 -15.39344 -15.07479 -14.71406 -14.37066 -13.82673 -13.73264 -13.68978 -13.48357 -13.44973 -13.30301 -13.05359 -13.03278 -12.83062 -12.50218 -12.28476 -11.96852 -11.82957 -11.68345 -11.44279 -11.37142 -11.25931 -11.11306 -10.86666 -10.78187 -10.55523 -10.42505 -9.94513 -9.77722 -9.47399 -9.37827 -9.09956 -7.60799 -6.89384 -6.45377 -4.41666 2.41432 2.98573 3.00839 3.03099 3.04783 3.61904 3.83112 3.95069 4.41893 4.49938 4.92387 4.98128 5.01342 5.15450 5.21010 5.22340 5.38696 5.44156 5.55352 5.60766 5.90593 5.95201 6.06750 6.08327 6.11541 6.19377 6.27397 6.35270 6.62816 6.68895 6.80182 6.89711 7.05382 7.24579 7.32512 7.51420 7.61673 7.82006 7.95022 8.22864 8.52065 8.63777 8.78743 8.91914 10.08759 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.007450 B = 0.006995 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3757.424893 B = 4001.758583 C = 7327.730234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.190 3.810 3 C -0.180 4.180 4 C -0.118 4.118 5 C 0.077 3.923 6 O -0.577 6.577 7 N -0.737 5.737 8 C 0.123 3.877 9 C -0.147 4.147 10 C -0.273 4.273 11 C 0.513 3.487 12 F -0.195 7.195 13 F -0.193 7.193 14 F -0.195 7.195 15 C -0.090 4.090 16 C -0.144 4.144 17 C 0.092 3.908 18 C -0.452 4.452 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.792 5.792 22 Si 0.911 3.089 23 H -0.271 1.271 24 H -0.261 1.261 25 H -0.275 1.275 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.377 0.623 37 H 0.397 0.603 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 4.935 -8.949 10.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.101 3.899 3 C -0.238 4.238 4 C -0.155 4.155 5 C 0.000 4.000 6 O -0.382 6.382 7 N -0.370 5.370 8 C 0.023 3.977 9 C -0.170 4.170 10 C -0.276 4.276 11 C 0.459 3.541 12 F -0.177 7.177 13 F -0.174 7.174 14 F -0.177 7.177 15 C -0.110 4.110 16 C -0.164 4.164 17 C 0.087 3.913 18 C -0.482 4.482 19 H 0.095 0.905 20 C -0.144 4.144 21 N -0.418 5.418 22 Si 0.735 3.265 23 H -0.196 1.196 24 H -0.185 1.185 25 H -0.200 1.200 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.223 0.777 37 H 0.233 0.767 38 H 0.138 0.862 39 H 0.113 0.887 40 H 0.144 0.856 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.844 4.536 -8.392 9.577 hybrid contribution 0.143 -0.394 -0.296 0.514 sum -0.701 4.142 -8.689 9.651 Atomic orbital electron populations 1.22571 0.95834 1.02095 1.03168 1.19797 0.93268 0.91773 0.85021 1.22622 1.01103 0.96710 1.03345 1.21657 1.01725 1.00184 0.91983 1.22268 0.97645 0.95105 0.85029 1.86473 1.77704 1.57802 1.16241 1.43991 1.56176 1.35863 1.01016 1.17649 0.99454 0.95541 0.85012 1.20149 1.04022 0.97692 0.95138 1.18864 1.13364 0.99129 0.96223 1.18653 0.78311 0.84785 0.72323 1.93140 1.36097 1.92282 1.96146 1.93091 1.93334 1.84652 1.46331 1.93077 1.93540 1.72521 1.58514 1.20030 0.99556 0.96216 0.95174 1.20758 1.02462 0.95424 0.97800 1.17432 0.92421 0.91871 0.89617 1.19305 1.19491 0.99877 1.09536 0.90491 1.25855 0.94934 0.99581 0.94034 1.69794 1.25984 1.31940 1.14040 0.86250 0.81144 0.80534 0.78560 1.19592 1.18498 1.20008 0.90042 0.92816 0.92494 0.92650 0.92782 0.89944 0.90934 0.90802 0.93207 0.93254 0.77708 0.76746 0.86174 0.88682 0.85649 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 7.65 37.16 0.28 -2.41 16 2 C 0.19 2.88 0.83 -131.82 -0.11 2.77 16 3 C -0.18 -2.60 7.64 37.16 0.28 -2.31 16 4 C -0.12 -1.58 4.73 -26.73 -0.13 -1.70 16 5 C 0.08 0.86 6.36 37.16 0.24 1.10 16 6 O -0.58 -6.49 13.66 -35.23 -0.48 -6.97 16 7 N -0.74 -13.71 5.15 -45.57 -0.23 -13.94 16 8 C 0.12 2.68 6.26 -83.29 -0.52 2.16 16 9 C -0.15 -3.07 5.86 -39.42 -0.23 -3.30 16 10 C -0.27 -5.92 5.47 -104.40 -0.57 -6.49 16 11 C 0.51 10.15 3.36 36.01 0.12 10.27 16 12 F -0.20 -3.84 17.30 2.25 0.04 -3.81 16 13 F -0.19 -3.73 16.43 2.25 0.04 -3.70 16 14 F -0.19 -3.65 16.43 2.25 0.04 -3.62 16 15 C -0.09 -2.04 9.31 -39.98 -0.37 -2.42 16 16 C -0.14 -3.50 8.59 -39.28 -0.34 -3.84 16 17 C 0.09 2.22 5.55 -106.63 -0.59 1.62 16 18 C -0.45 -10.80 8.43 -37.89 -0.32 -11.12 16 19 H 0.08 1.74 6.81 -52.49 -0.36 1.38 16 20 C 0.07 1.72 5.26 -17.33 -0.09 1.63 16 21 N -0.79 -19.29 10.90 55.55 0.61 -18.68 16 22 Si 0.91 17.64 29.57 -169.99 -5.03 12.62 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 25 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 26 H 0.08 1.42 4.70 -51.93 -0.24 1.17 16 27 H 0.05 0.67 6.79 -51.93 -0.35 0.31 16 28 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 30 H 0.05 0.65 6.89 -51.93 -0.36 0.29 16 31 H 0.08 1.37 4.74 -51.93 -0.25 1.13 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.51 6.61 -51.93 -0.34 0.17 16 35 H 0.05 0.50 6.65 -51.93 -0.35 0.15 16 36 H 0.38 2.36 9.12 45.56 0.42 2.78 16 37 H 0.40 7.39 6.78 -40.82 -0.28 7.11 16 38 H 0.12 2.30 3.17 -52.48 -0.17 2.13 16 39 H 0.10 2.01 7.57 -52.49 -0.40 1.62 16 40 H 0.13 3.16 6.31 -52.49 -0.33 2.83 16 41 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -26.23 333.04 -6.18 -32.41 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -3.83 Total: 14.71 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -2.35 Total: -14.04 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.37 Total: -32.62 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.48 Total: -6.97 kcal Atomic # 9 Polarization: -11.23 SS G_CDS: 0.11 Total: -11.12 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.23 -6.18 -32.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167741992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.156 kcal (2) G-P(sol) polarization free energy of solvation -26.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds