Wall clock time and date at job start Tue Mar 31 2020 12:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47409 * 2 1 4 4 C 1.52997 * 109.47266 * 239.99651 * 2 1 3 5 5 C 1.52997 * 109.47163 * 60.00166 * 4 2 1 6 6 O 1.42905 * 109.47519 * 179.97438 * 5 4 2 7 7 N 1.46502 * 109.46983 * 119.99997 * 2 1 3 8 8 C 1.38730 * 119.99891 * 302.67121 * 7 2 1 9 9 C 1.38754 * 120.29713 * 355.88585 * 8 7 2 10 10 C 1.38160 * 120.02624 * 179.97438 * 9 8 7 11 11 C 1.50706 * 119.68207 * 179.97438 * 10 9 8 12 12 F 1.39902 * 109.47321 * 89.99745 * 11 10 9 13 13 F 1.39904 * 109.46558 * 209.99513 * 11 10 9 14 14 F 1.39894 * 109.47096 * 329.99445 * 11 10 9 15 15 C 1.38895 * 120.63168 * 0.02562 * 10 9 8 16 16 C 1.36455 * 120.59401 * 359.69498 * 15 10 9 17 17 C 1.40732 * 119.94777 * 0.56191 * 16 15 10 18 18 C 1.41049 * 120.30235 * 179.73824 * 17 16 15 19 19 H 1.08000 * 120.00076 * 210.49160 * 18 17 16 20 20 C 1.39925 * 119.99856 * 30.49093 * 18 17 16 21 21 N 1.30877 * 120.00252 * 9.55763 * 20 18 17 22 22 Si 1.86799 * 119.99722 * 189.55024 * 20 18 17 23 23 H 1.48495 * 109.47600 * 265.02576 * 22 20 18 24 24 H 1.48506 * 109.47097 * 25.02809 * 22 20 18 25 25 H 1.48508 * 109.47015 * 145.02477 * 22 20 18 26 26 H 1.08993 * 109.47425 * 292.44226 * 1 2 3 27 27 H 1.09006 * 109.46940 * 52.44484 * 1 2 3 28 28 H 1.09001 * 109.47032 * 172.44137 * 1 2 3 29 29 H 1.08997 * 109.47018 * 189.45717 * 3 2 1 30 30 H 1.09000 * 109.46321 * 309.45730 * 3 2 1 31 31 H 1.08994 * 109.47052 * 69.45427 * 3 2 1 32 32 H 1.09000 * 109.47548 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47291 * 300.00189 * 4 2 1 34 34 H 1.08999 * 109.47165 * 300.00199 * 5 4 2 35 35 H 1.09004 * 109.47434 * 60.00058 * 5 4 2 36 36 H 0.96698 * 114.00094 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00377 * 122.67698 * 7 2 1 38 38 H 1.08004 * 119.98141 * 359.94374 * 9 8 7 39 39 H 1.07994 * 119.70641 * 179.97438 * 15 10 9 40 40 H 1.08002 * 120.02560 * 180.30277 * 16 15 10 41 41 H 0.97000 * 120.00186 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5301 -0.0001 -2.4984 6 8 2.0069 -0.6735 -3.6653 7 7 2.0183 -0.6906 1.1962 8 6 1.6380 -0.2498 2.4554 9 6 0.8653 0.8945 2.5927 10 6 0.4893 1.3281 3.8494 11 6 -0.3495 2.5723 3.9896 12 9 -1.7048 2.2272 3.9570 13 9 -0.0565 3.1974 5.2064 14 9 -0.0656 3.4472 2.9356 15 6 0.8779 0.6290 4.9850 16 6 1.6330 -0.5027 4.8793 17 6 2.0345 -0.9635 3.6116 18 6 2.8198 -2.1293 3.4941 19 1 3.5187 -2.2294 2.6768 20 6 2.6932 -3.1560 4.4363 21 7 1.7230 -3.1229 5.3140 22 14 3.9091 -4.5741 4.4412 23 1 3.3530 -5.7059 3.6570 24 1 5.1888 -4.1311 3.8316 25 1 4.1524 -5.0127 5.8390 26 1 -0.3634 0.3923 0.9497 27 1 -0.3633 0.6264 -0.8148 28 1 -0.3633 -1.0187 -0.1352 29 1 3.1168 1.4471 -0.1689 30 1 1.5454 2.0026 -0.7935 31 1 1.8211 1.9052 0.9622 32 1 3.1300 -0.7209 -1.2494 33 1 1.6767 -1.7490 -1.2491 34 1 0.4401 -0.0001 -2.4985 35 1 1.8934 1.0276 -2.4985 36 1 1.7213 -0.2702 -4.4964 37 1 2.6075 -1.4560 1.1078 38 1 0.5582 1.4466 1.7168 39 1 0.5759 0.9816 5.9600 40 1 1.9259 -1.0419 5.7680 41 1 1.6351 -3.8348 5.9669 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167741992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:00 Heat of formation + Delta-G solvation = -195.974334 kcal Electronic energy + Delta-G solvation = -27752.145489 eV Core-core repulsion = 23409.037850 eV Total energy + Delta-G solvation = -4343.107640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.92438 -48.45038 -48.39480 -40.72021 -38.74276 -37.16628 -35.66745 -33.78444 -31.99103 -29.73301 -29.52162 -28.35831 -28.17417 -25.38200 -24.48808 -22.85824 -21.97756 -20.24862 -19.29435 -19.22742 -19.17411 -18.92188 -18.37653 -17.15409 -16.43219 -16.33410 -16.32080 -15.89103 -15.37179 -15.30137 -15.00964 -14.87649 -14.84998 -14.69710 -14.60634 -14.57006 -14.25741 -14.00433 -13.90728 -13.42919 -13.21600 -13.17720 -12.88078 -12.66375 -12.64378 -12.50239 -12.18840 -12.13383 -12.08301 -11.72124 -11.48876 -11.12016 -11.00948 -10.83432 -10.61175 -9.39870 -8.63509 -8.10788 -6.21310 0.67100 1.25064 1.40914 1.45199 1.53241 1.99560 2.20716 2.66944 2.77934 3.24122 3.39049 3.46106 3.50994 3.85267 3.97206 4.07918 4.16161 4.37458 4.40568 4.46167 4.56509 4.60463 4.79425 4.82698 4.94789 4.99095 5.03973 5.07906 5.12169 5.17810 5.29142 5.44023 5.50492 5.55232 5.57060 5.85883 6.02480 6.18764 6.46730 6.78831 6.88815 6.94746 7.13816 7.28062 8.36843 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.007450 B = 0.006995 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3757.424893 B = 4001.758583 C = 7327.730234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.186 3.814 3 C -0.176 4.176 4 C -0.113 4.113 5 C 0.082 3.918 6 O -0.596 6.596 7 N -0.736 5.736 8 C 0.126 3.874 9 C -0.148 4.148 10 C -0.275 4.275 11 C 0.521 3.479 12 F -0.192 7.192 13 F -0.189 7.189 14 F -0.185 7.185 15 C -0.102 4.102 16 C -0.163 4.163 17 C 0.060 3.940 18 C -0.475 4.475 19 H 0.082 0.918 20 C 0.034 3.966 21 N -0.827 5.827 22 Si 0.979 3.021 23 H -0.267 1.267 24 H -0.257 1.257 25 H -0.272 1.272 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.398 0.602 37 H 0.394 0.606 38 H 0.143 0.857 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 5.649 -11.120 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.099 3.901 3 C -0.233 4.233 4 C -0.151 4.151 5 C 0.004 3.996 6 O -0.405 6.405 7 N -0.369 5.369 8 C 0.025 3.975 9 C -0.172 4.172 10 C -0.278 4.278 11 C 0.468 3.532 12 F -0.174 7.174 13 F -0.170 7.170 14 F -0.166 7.166 15 C -0.122 4.122 16 C -0.184 4.184 17 C 0.055 3.945 18 C -0.505 4.505 19 H 0.100 0.900 20 C -0.180 4.180 21 N -0.454 5.454 22 Si 0.801 3.199 23 H -0.192 1.192 24 H -0.181 1.181 25 H -0.197 1.197 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.248 0.752 37 H 0.229 0.771 38 H 0.160 0.840 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.868 5.274 -10.610 11.880 hybrid contribution 0.099 -0.531 0.290 0.613 sum -0.769 4.743 -10.320 11.384 Atomic orbital electron populations 1.22539 0.95475 1.02275 1.03086 1.20033 0.93478 0.92275 0.84310 1.22566 1.01626 0.95984 1.03168 1.21573 1.01358 0.99689 0.92448 1.22196 0.98207 0.95216 0.83975 1.86414 1.78100 1.58590 1.17380 1.44191 1.55700 1.35823 1.01140 1.17759 0.98730 0.95289 0.85723 1.20412 1.03547 0.97525 0.95703 1.19146 1.12850 0.99624 0.96205 1.18299 0.78018 0.84226 0.72702 1.93145 1.35778 1.92315 1.96165 1.93101 1.93318 1.84465 1.46164 1.93094 1.93479 1.72023 1.58033 1.20131 0.99823 0.96138 0.96149 1.20699 1.03874 0.96268 0.97579 1.17754 0.93475 0.92831 0.90446 1.19527 1.20147 1.00367 1.10409 0.90006 1.26638 0.96200 1.01780 0.93405 1.69871 1.27546 1.33047 1.14924 0.85221 0.78863 0.77333 0.78512 1.19233 1.18109 1.19695 0.92435 0.89482 0.93175 0.92467 0.89655 0.92179 0.91458 0.91954 0.92015 0.91685 0.75152 0.77069 0.83991 0.87830 0.87458 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.92 7.65 71.98 0.55 -4.37 16 2 C 0.19 5.30 0.83 3.60 0.00 5.31 16 3 C -0.18 -4.61 7.64 71.98 0.55 -4.06 16 4 C -0.11 -2.80 4.73 30.59 0.14 -2.65 16 5 C 0.08 1.54 6.36 71.98 0.46 2.00 16 6 O -0.60 -11.61 13.66 -148.98 -2.04 -13.65 16 7 N -0.74 -27.18 5.15 -298.09 -1.54 -28.71 16 8 C 0.13 5.54 6.26 38.99 0.24 5.79 16 9 C -0.15 -6.15 5.86 22.37 0.13 -6.02 16 10 C -0.28 -11.87 5.47 -19.72 -0.11 -11.98 16 11 C 0.52 19.95 3.36 71.24 0.24 20.19 16 12 F -0.19 -7.31 17.30 44.97 0.78 -6.53 16 13 F -0.19 -7.10 16.43 44.97 0.74 -6.36 16 14 F -0.18 -6.54 16.43 44.97 0.74 -5.80 16 15 C -0.10 -4.76 9.31 22.01 0.21 -4.55 16 16 C -0.16 -8.28 8.59 22.46 0.19 -8.09 16 17 C 0.06 2.99 5.55 -21.17 -0.12 2.87 16 18 C -0.47 -23.27 8.43 23.37 0.20 -23.07 16 19 H 0.08 3.77 6.81 -2.91 -0.02 3.75 16 20 C 0.03 1.63 5.26 85.24 0.45 2.08 16 21 N -0.83 -41.67 10.90 21.83 0.24 -41.43 16 22 Si 0.98 36.64 29.57 68.60 2.03 38.66 16 23 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 25 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 26 H 0.06 1.90 4.70 -2.39 -0.01 1.89 16 27 H 0.09 1.83 6.79 -2.38 -0.02 1.82 16 28 H 0.05 1.45 8.13 -2.39 -0.02 1.44 16 29 H 0.06 1.48 8.12 -2.39 -0.02 1.46 16 30 H 0.08 1.70 6.89 -2.39 -0.02 1.69 16 31 H 0.06 1.87 4.74 -2.39 -0.01 1.86 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.02 6.61 -2.39 -0.02 1.01 16 35 H 0.07 1.03 6.65 -2.38 -0.02 1.02 16 36 H 0.40 3.68 9.12 -74.06 -0.68 3.00 16 37 H 0.39 14.76 6.78 -92.71 -0.63 14.13 16 38 H 0.14 5.21 3.17 -2.91 -0.01 5.20 16 39 H 0.10 4.48 7.57 -2.91 -0.02 4.46 16 40 H 0.11 5.73 6.31 -2.91 -0.02 5.71 16 41 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 Total: -1.00 -57.01 333.04 3.90 -53.11 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -0.19 Total: 37.27 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 3.14 Total: -26.56 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -1.30 Total: -70.15 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -2.04 Total: -13.65 kcal Atomic # 9 Polarization: -20.95 SS G_CDS: 2.26 Total: -18.69 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.66 kcal Total: -57.01 3.90 -53.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167741992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.863 kcal (2) G-P(sol) polarization free energy of solvation -57.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds