Wall clock time and date at job start Tue Mar 31 2020 12:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47170 * 2 1 4 4 C 1.53001 * 109.47125 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46922 * 179.97438 * 4 3 2 6 6 C 1.37097 * 119.99726 * 269.99997 * 5 4 3 7 7 H 1.08003 * 119.99463 * 142.74521 * 6 5 4 8 8 C 1.38951 * 120.00231 * 322.73819 * 6 5 4 9 9 N 1.31405 * 120.00248 * 339.89947 * 8 6 5 10 10 Si 1.86801 * 119.99649 * 159.90105 * 8 6 5 11 11 H 1.48496 * 109.47363 * 59.99855 * 10 8 6 12 12 H 1.48503 * 109.46908 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47073 * 299.99598 * 10 8 6 14 14 C 1.34773 * 119.99977 * 90.00091 * 5 4 3 15 15 O 1.21298 * 119.99879 * 5.36238 * 14 5 4 16 16 C 1.50699 * 120.00173 * 185.35964 * 14 5 4 17 17 C 1.53003 * 109.47214 * 185.27448 * 16 14 5 18 18 H 1.09001 * 110.04725 * 53.51832 * 17 16 14 19 19 O 1.45400 * 110.11180 * 292.01219 * 17 16 14 20 20 C 1.34342 * 109.00854 * 240.73652 * 19 17 16 21 21 O 1.21468 * 124.90087 * 179.97438 * 20 19 17 22 22 C 1.47430 * 110.20728 * 0.02562 * 20 19 17 23 23 C 1.39621 * 132.54068 * 179.97438 * 22 20 19 24 24 C 1.37952 * 119.78876 * 180.02562 * 23 22 20 25 25 C 1.38392 * 120.32595 * 359.96191 * 24 23 22 26 26 C 1.38484 * 120.21281 * 0.05409 * 25 24 23 27 27 C 1.37540 * 119.95331 * 359.96966 * 26 25 24 28 28 H 1.09005 * 109.47047 * 60.00589 * 1 2 3 29 29 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47506 * 300.00305 * 1 2 3 31 31 H 1.09002 * 109.47482 * 239.99330 * 2 1 3 32 32 H 1.09005 * 109.47047 * 119.99411 * 2 1 3 33 33 H 1.08995 * 109.47155 * 59.99480 * 3 2 1 34 34 H 1.09005 * 109.46655 * 299.99651 * 3 2 1 35 35 H 1.08999 * 109.46865 * 60.00144 * 4 3 2 36 36 H 1.08996 * 109.47157 * 299.99715 * 4 3 2 37 37 H 0.96992 * 120.00330 * 185.21341 * 9 8 6 38 38 H 1.08999 * 109.46495 * 65.27352 * 16 14 5 39 39 H 1.08999 * 109.47002 * 305.27705 * 16 14 5 40 40 H 1.07998 * 120.10451 * 0.03976 * 23 22 20 41 41 H 1.07998 * 119.83224 * 179.97438 * 24 23 22 42 42 H 1.07995 * 119.89334 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.02365 * 180.23750 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2873 3.4693 -1.1876 7 1 4.0583 4.5204 -1.2837 8 6 4.8140 2.7714 -2.2675 9 7 5.4526 1.6400 -2.0703 10 14 4.6142 3.4415 -3.9997 11 1 5.2540 4.7785 -4.0901 12 1 5.2610 2.5173 -4.9656 13 1 3.1692 3.5615 -4.3204 14 6 4.2824 3.4598 1.1669 15 8 4.1737 2.8596 2.2154 16 6 4.6681 4.9166 1.1691 17 6 4.9903 5.3567 2.5986 18 1 5.7374 4.6934 3.0344 19 8 3.7827 5.3486 3.4084 20 6 3.5521 6.5916 3.8627 21 8 2.6163 6.9113 4.5681 22 6 4.5979 7.5122 3.3806 23 6 4.8105 8.8796 3.5660 24 6 5.8999 9.4896 2.9793 25 6 6.7825 8.7527 2.2092 26 6 6.5780 7.3961 2.0205 27 6 5.4949 6.7778 2.6003 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9336 0.9285 -0.8891 36 1 3.9329 0.9288 0.8909 37 1 5.8853 1.1914 -2.8134 38 1 3.8407 5.5120 0.7833 39 1 5.5450 5.0612 0.5380 40 1 4.1244 9.4579 4.1670 41 1 6.0648 10.5473 3.1220 42 1 7.6333 9.2373 1.7535 43 1 7.2709 6.8233 1.4220 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180185987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:39 Heat of formation + Delta-G solvation = -90.675968 kcal Electronic energy + Delta-G solvation = -26544.210802 eV Core-core repulsion = 22747.525983 eV Total energy + Delta-G solvation = -3796.684820 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.53367 -38.64752 -38.29608 -37.12672 -35.35321 -33.93594 -32.52239 -31.54799 -31.30218 -30.16961 -28.25975 -25.11366 -24.76666 -24.23966 -22.53400 -21.87032 -20.63114 -20.25908 -19.13249 -17.53325 -17.22508 -16.83059 -16.11436 -15.90154 -15.79000 -14.92150 -14.79415 -14.62815 -14.37995 -14.22693 -14.02508 -13.58936 -13.24716 -13.02894 -12.96863 -12.79237 -12.44092 -12.20814 -11.98674 -11.91848 -11.50988 -11.41458 -11.21879 -11.21471 -10.88710 -10.61423 -10.56040 -10.47131 -10.35564 -10.23100 -10.11014 -9.72732 -9.25250 -9.19947 -9.04640 -8.45891 -7.51609 -6.43937 -4.14479 0.51349 1.06995 2.55044 3.04802 3.14911 3.16935 3.31242 3.57162 3.75139 3.84129 4.01946 4.13239 4.58847 4.74277 4.76204 4.91290 5.04932 5.15522 5.24079 5.32337 5.49889 5.50951 5.54244 5.68589 5.71740 5.97273 6.02758 6.07426 6.11562 6.14503 6.20789 6.26840 6.27508 6.41039 6.45254 6.55879 6.61508 6.74336 6.85366 6.97747 7.13720 7.30197 7.48557 7.60473 7.91164 8.30660 9.00036 9.45148 9.89656 10.57350 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012023 B = 0.004270 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.246405 B = 6556.033738 C = 8216.693128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.112 3.888 5 N -0.437 5.437 6 C -0.346 4.346 7 H 0.087 0.913 8 C 0.048 3.952 9 N -0.858 5.858 10 Si 0.913 3.087 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.471 3.529 15 O -0.594 6.594 16 C -0.123 4.123 17 C 0.136 3.864 18 H 0.129 0.871 19 O -0.287 6.287 20 C 0.515 3.485 21 O -0.464 6.464 22 C -0.194 4.194 23 C -0.040 4.040 24 C -0.132 4.132 25 C -0.082 4.082 26 C -0.096 4.096 27 C -0.085 4.085 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.272 0.728 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 10.031 2.699 10.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.011 4.011 5 N -0.155 5.155 6 C -0.474 4.474 7 H 0.105 0.895 8 C -0.159 4.159 9 N -0.494 5.494 10 Si 0.740 3.260 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.197 1.197 14 C 0.259 3.741 15 O -0.479 6.479 16 C -0.163 4.163 17 C 0.081 3.919 18 H 0.146 0.854 19 O -0.201 6.201 20 C 0.357 3.643 21 O -0.351 6.351 22 C -0.196 4.196 23 C -0.058 4.058 24 C -0.150 4.150 25 C -0.100 4.100 26 C -0.114 4.114 27 C -0.085 4.085 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.132 0.868 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.169 9.443 3.417 10.274 hybrid contribution 0.033 0.462 -1.152 1.242 sum 2.201 9.905 2.265 10.397 Atomic orbital electron populations 1.21759 0.96653 1.00667 1.01504 1.21425 0.94977 0.97732 1.01579 1.21906 0.97930 0.95493 1.01304 1.21450 0.91105 0.84894 1.03658 1.43375 1.55692 1.12163 1.04286 1.19352 1.43884 0.95870 0.88256 0.89511 1.25352 0.94441 0.95935 1.00132 1.69818 1.29535 1.17298 1.32748 0.86221 0.78965 0.78816 0.82027 1.19748 1.20843 1.19729 1.20067 0.81093 0.88470 0.84476 1.90582 1.57306 1.68221 1.31815 1.21706 1.04737 0.97143 0.92668 1.21918 0.84765 0.92500 0.92756 0.85374 1.87509 1.43033 1.28333 1.61257 1.20661 0.83835 0.81971 0.77853 1.90832 1.31647 1.78215 1.34454 1.21028 0.98863 0.95875 1.03851 1.20859 0.96518 0.91899 0.96515 1.21166 0.94873 1.00443 0.98522 1.21417 0.98691 0.93497 0.96350 1.20402 0.96568 0.94694 0.99693 1.20985 0.95382 0.95925 0.96252 0.93067 0.93425 0.93048 0.92261 0.92397 0.93062 0.92306 0.87621 0.92669 0.91785 0.89265 0.86834 0.84868 0.84867 0.84691 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.12 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.62 5.54 -26.73 -0.15 -2.77 16 4 C 0.11 2.64 5.04 -4.04 -0.02 2.62 16 5 N -0.44 -10.60 2.52 -114.81 -0.29 -10.89 16 6 C -0.35 -8.27 8.53 -14.93 -0.13 -8.39 16 7 H 0.09 1.96 7.22 -52.48 -0.38 1.58 16 8 C 0.05 1.15 4.99 -17.47 -0.09 1.06 16 9 N -0.86 -21.59 11.35 55.50 0.63 -20.96 16 10 Si 0.91 18.50 29.60 -169.99 -5.03 13.47 16 11 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 12 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 14 C 0.47 11.01 7.55 -10.99 -0.08 10.93 16 15 O -0.59 -15.36 15.06 -6.92 -0.10 -15.46 16 16 C -0.12 -2.27 4.06 -27.88 -0.11 -2.38 16 17 C 0.14 2.30 3.14 -27.84 -0.09 2.21 16 18 H 0.13 2.11 8.00 -51.93 -0.42 1.70 16 19 O -0.29 -5.70 10.17 -44.18 -0.45 -6.15 16 20 C 0.51 9.38 8.58 34.47 0.30 9.68 16 21 O -0.46 -9.45 18.04 -18.92 -0.34 -9.79 16 22 C -0.19 -2.84 6.27 -105.07 -0.66 -3.50 16 23 C -0.04 -0.45 10.11 -39.17 -0.40 -0.85 16 24 C -0.13 -1.18 10.02 -39.63 -0.40 -1.58 16 25 C -0.08 -0.72 10.05 -39.43 -0.40 -1.11 16 26 C -0.10 -1.04 10.03 -39.75 -0.40 -1.43 16 27 C -0.08 -1.17 5.67 -104.27 -0.59 -1.76 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.11 2.62 5.44 -51.93 -0.28 2.34 16 36 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 37 H 0.27 6.49 8.32 -40.82 -0.34 6.15 16 38 H 0.09 1.62 8.03 -51.93 -0.42 1.20 16 39 H 0.11 1.92 7.86 -51.93 -0.41 1.52 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -30.53 364.97 -9.16 -39.68 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.07 Total: 5.88 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.00 Total: -1.28 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.34 Total: -31.86 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.89 Total: -31.40 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.53 -9.16 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180185987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.993 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds