Wall clock time and date at job start Tue Mar 31 2020 12:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47170 * 2 1 4 4 C 1.53001 * 109.47125 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46922 * 179.97438 * 4 3 2 6 6 C 1.37097 * 119.99726 * 269.99997 * 5 4 3 7 7 H 1.08003 * 119.99463 * 142.74521 * 6 5 4 8 8 C 1.38951 * 120.00231 * 322.73819 * 6 5 4 9 9 N 1.31405 * 120.00248 * 339.89947 * 8 6 5 10 10 Si 1.86801 * 119.99649 * 159.90105 * 8 6 5 11 11 H 1.48496 * 109.47363 * 59.99855 * 10 8 6 12 12 H 1.48503 * 109.46908 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47073 * 299.99598 * 10 8 6 14 14 C 1.34773 * 119.99977 * 90.00091 * 5 4 3 15 15 O 1.21298 * 119.99879 * 5.36238 * 14 5 4 16 16 C 1.50699 * 120.00173 * 185.35964 * 14 5 4 17 17 C 1.53003 * 109.47214 * 185.27448 * 16 14 5 18 18 H 1.09001 * 110.04725 * 53.51832 * 17 16 14 19 19 O 1.45400 * 110.11180 * 292.01219 * 17 16 14 20 20 C 1.34342 * 109.00854 * 240.73652 * 19 17 16 21 21 O 1.21468 * 124.90087 * 179.97438 * 20 19 17 22 22 C 1.47430 * 110.20728 * 0.02562 * 20 19 17 23 23 C 1.39621 * 132.54068 * 179.97438 * 22 20 19 24 24 C 1.37952 * 119.78876 * 180.02562 * 23 22 20 25 25 C 1.38392 * 120.32595 * 359.96191 * 24 23 22 26 26 C 1.38484 * 120.21281 * 0.05409 * 25 24 23 27 27 C 1.37540 * 119.95331 * 359.96966 * 26 25 24 28 28 H 1.09005 * 109.47047 * 60.00589 * 1 2 3 29 29 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47506 * 300.00305 * 1 2 3 31 31 H 1.09002 * 109.47482 * 239.99330 * 2 1 3 32 32 H 1.09005 * 109.47047 * 119.99411 * 2 1 3 33 33 H 1.08995 * 109.47155 * 59.99480 * 3 2 1 34 34 H 1.09005 * 109.46655 * 299.99651 * 3 2 1 35 35 H 1.08999 * 109.46865 * 60.00144 * 4 3 2 36 36 H 1.08996 * 109.47157 * 299.99715 * 4 3 2 37 37 H 0.96992 * 120.00330 * 185.21341 * 9 8 6 38 38 H 1.08999 * 109.46495 * 65.27352 * 16 14 5 39 39 H 1.08999 * 109.47002 * 305.27705 * 16 14 5 40 40 H 1.07998 * 120.10451 * 0.03976 * 23 22 20 41 41 H 1.07998 * 119.83224 * 179.97438 * 24 23 22 42 42 H 1.07995 * 119.89334 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.02365 * 180.23750 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2873 3.4693 -1.1876 7 1 4.0583 4.5204 -1.2837 8 6 4.8140 2.7714 -2.2675 9 7 5.4526 1.6400 -2.0703 10 14 4.6142 3.4415 -3.9997 11 1 5.2540 4.7785 -4.0901 12 1 5.2610 2.5173 -4.9656 13 1 3.1692 3.5615 -4.3204 14 6 4.2824 3.4598 1.1669 15 8 4.1737 2.8596 2.2154 16 6 4.6681 4.9166 1.1691 17 6 4.9903 5.3567 2.5986 18 1 5.7374 4.6934 3.0344 19 8 3.7827 5.3486 3.4084 20 6 3.5521 6.5916 3.8627 21 8 2.6163 6.9113 4.5681 22 6 4.5979 7.5122 3.3806 23 6 4.8105 8.8796 3.5660 24 6 5.8999 9.4896 2.9793 25 6 6.7825 8.7527 2.2092 26 6 6.5780 7.3961 2.0205 27 6 5.4949 6.7778 2.6003 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9336 0.9285 -0.8891 36 1 3.9329 0.9288 0.8909 37 1 5.8853 1.1914 -2.8134 38 1 3.8407 5.5120 0.7833 39 1 5.5450 5.0612 0.5380 40 1 4.1244 9.4579 4.1670 41 1 6.0648 10.5473 3.1220 42 1 7.6333 9.2373 1.7535 43 1 7.2709 6.8233 1.4220 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180185987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:38 Heat of formation + Delta-G solvation = -105.656574 kcal Electronic energy + Delta-G solvation = -26544.860410 eV Core-core repulsion = 22747.525983 eV Total energy + Delta-G solvation = -3797.334427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.78663 -40.45868 -39.37269 -38.53721 -37.14387 -35.57121 -33.80150 -33.38226 -32.24423 -31.39468 -29.78849 -26.88811 -26.21483 -25.24383 -24.00746 -22.99425 -22.03854 -21.63324 -20.93948 -18.89525 -18.62063 -18.25609 -17.69763 -17.43483 -16.85969 -16.55916 -16.22273 -16.17403 -15.92279 -15.53800 -15.20060 -14.92909 -14.64491 -14.42990 -14.24591 -13.88376 -13.81897 -13.74995 -13.55733 -13.11823 -13.02408 -12.84850 -12.78541 -12.61504 -12.23144 -12.15281 -12.04681 -12.01116 -11.91793 -11.81211 -11.45161 -11.41290 -11.00956 -10.39970 -10.13351 -9.92810 -9.42133 -8.27768 -6.05159 -0.49605 0.22943 1.35333 1.43919 1.52221 1.59160 1.94947 2.05490 2.32270 2.62737 2.68247 2.81359 3.04519 3.19903 3.64834 3.84434 4.00890 4.05245 4.11734 4.12408 4.27460 4.29872 4.37467 4.43600 4.56890 4.58741 4.67663 4.75986 4.81966 4.86794 4.93405 4.97372 5.05709 5.14345 5.15612 5.29986 5.33740 5.37033 5.41170 5.45875 5.58218 5.64117 5.82555 6.05521 6.23103 6.43470 7.13281 7.58144 8.03939 8.74717 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012023 B = 0.004270 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.246405 B = 6556.033738 C = 8216.693128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.115 4.115 4 C 0.113 3.887 5 N -0.449 5.449 6 C -0.360 4.360 7 H 0.100 0.900 8 C 0.010 3.990 9 N -0.891 5.891 10 Si 0.980 3.020 11 H -0.257 1.257 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.454 3.546 15 O -0.629 6.629 16 C -0.108 4.108 17 C 0.137 3.863 18 H 0.122 0.878 19 O -0.325 6.325 20 C 0.507 3.493 21 O -0.503 6.503 22 C -0.218 4.218 23 C -0.042 4.042 24 C -0.118 4.118 25 C -0.062 4.062 26 C -0.097 4.097 27 C -0.092 4.092 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.274 0.726 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.175 0.825 42 H 0.178 0.822 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.088 12.932 0.865 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.154 4.154 4 C -0.011 4.011 5 N -0.167 5.167 6 C -0.487 4.487 7 H 0.117 0.883 8 C -0.194 4.194 9 N -0.527 5.527 10 Si 0.804 3.196 11 H -0.181 1.181 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.244 3.756 15 O -0.517 6.517 16 C -0.148 4.148 17 C 0.082 3.918 18 H 0.139 0.861 19 O -0.240 6.240 20 C 0.352 3.648 21 O -0.393 6.393 22 C -0.220 4.220 23 C -0.060 4.060 24 C -0.135 4.135 25 C -0.079 4.079 26 C -0.115 4.115 27 C -0.093 4.093 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.150 0.850 40 H 0.161 0.839 41 H 0.192 0.808 42 H 0.196 0.804 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.530 12.356 1.575 12.946 hybrid contribution -0.300 -0.430 -0.560 0.767 sum 3.230 11.926 1.016 12.397 Atomic orbital electron populations 1.21715 0.94243 1.02396 1.01679 1.21409 0.97057 0.95122 1.01774 1.21777 0.95780 0.97774 1.00066 1.21396 0.92963 0.84936 1.01759 1.43672 1.55712 1.12337 1.04975 1.19713 1.44151 0.96598 0.88244 0.88269 1.26159 0.93631 0.96036 1.03527 1.69931 1.30344 1.18599 1.33863 0.85184 0.78669 0.78714 0.77049 1.18073 1.21037 1.19796 1.20934 0.80452 0.90474 0.83740 1.90546 1.58673 1.69562 1.32912 1.21607 1.05341 0.93429 0.94412 1.21855 0.83806 0.94981 0.91163 0.86101 1.87438 1.44489 1.30110 1.61924 1.21263 0.84192 0.82261 0.77048 1.90776 1.33474 1.78748 1.36300 1.20795 0.98291 0.97012 1.05909 1.21170 0.97741 0.90439 0.96688 1.21656 0.93003 1.02297 0.96540 1.21955 0.99151 0.92281 0.94557 1.20767 0.95521 0.95990 0.99224 1.20770 0.96916 0.93546 0.98051 0.92548 0.90924 0.93242 0.91773 0.92512 0.94852 0.92686 0.88801 0.94966 0.91666 0.89000 0.84987 0.83901 0.80795 0.80434 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.91 71.98 0.71 -3.32 16 2 C -0.12 -3.99 5.93 30.59 0.18 -3.81 16 3 C -0.12 -4.92 5.54 30.59 0.17 -4.75 16 4 C 0.11 5.58 5.04 86.38 0.44 6.01 16 5 N -0.45 -22.56 2.52 -635.52 -1.60 -24.16 16 6 C -0.36 -17.27 8.53 84.04 0.72 -16.55 16 7 H 0.10 4.41 7.22 -2.91 -0.02 4.39 16 8 C 0.01 0.48 4.99 84.93 0.42 0.91 16 9 N -0.89 -45.33 11.35 21.66 0.25 -45.08 16 10 Si 0.98 37.05 29.60 68.60 2.03 39.08 16 11 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 12 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 13 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 14 C 0.45 22.22 7.55 87.66 0.66 22.88 16 15 O -0.63 -34.59 15.06 8.84 0.13 -34.46 16 16 C -0.11 -4.09 4.06 29.85 0.12 -3.97 16 17 C 0.14 4.81 3.14 29.88 0.09 4.90 16 18 H 0.12 4.25 8.00 -2.39 -0.02 4.23 16 19 O -0.32 -13.80 10.17 -48.08 -0.49 -14.29 16 20 C 0.51 19.56 8.58 70.24 0.60 20.17 16 21 O -0.50 -21.77 18.04 19.63 0.35 -21.41 16 22 C -0.22 -6.32 6.27 -20.16 -0.13 -6.44 16 23 C -0.04 -0.87 10.11 22.54 0.23 -0.64 16 24 C -0.12 -1.51 10.02 22.24 0.22 -1.28 16 25 C -0.06 -0.75 10.05 22.37 0.22 -0.53 16 26 C -0.10 -1.78 10.03 22.16 0.22 -1.55 16 27 C -0.09 -2.46 5.67 -19.63 -0.11 -2.58 16 28 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.09 4.85 5.44 -2.39 -0.01 4.84 16 36 H 0.03 1.68 7.36 -2.39 -0.02 1.67 16 37 H 0.27 13.14 8.32 -92.71 -0.77 12.37 16 38 H 0.09 3.39 8.03 -2.39 -0.02 3.37 16 39 H 0.13 4.41 7.86 -2.39 -0.02 4.39 16 40 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 42 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 43 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -71.18 364.97 6.46 -64.72 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 1.01 Total: 26.17 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 4.78 Total: 9.44 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -1.36 Total: -69.24 kcal Atomic # 8 Polarization: -70.15 SS G_CDS: 0.00 Total: -70.16 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -71.18 6.46 -64.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180185987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.939 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds