Wall clock time and date at job start Tue Mar 31 2020 12:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47293 * 2 1 4 4 C 1.52999 * 109.47235 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47182 * 180.02562 * 4 3 2 6 6 C 1.37101 * 119.99737 * 270.00166 * 5 4 3 7 7 H 1.07994 * 120.00191 * 140.04849 * 6 5 4 8 8 C 1.38954 * 119.99790 * 320.04656 * 6 5 4 9 9 N 1.31415 * 119.99816 * 163.76144 * 8 6 5 10 10 Si 1.86796 * 120.00066 * 343.75715 * 8 6 5 11 11 H 1.48500 * 109.47083 * 95.36808 * 10 8 6 12 12 H 1.48501 * 109.47158 * 215.36542 * 10 8 6 13 13 H 1.48498 * 109.47409 * 335.36758 * 10 8 6 14 14 C 1.34770 * 120.00223 * 90.00034 * 5 4 3 15 15 O 1.21297 * 120.00193 * 5.46784 * 14 5 4 16 16 C 1.50705 * 119.99976 * 185.47485 * 14 5 4 17 17 C 1.52998 * 109.46973 * 175.59595 * 16 14 5 18 18 H 1.09003 * 110.09877 * 306.50442 * 17 16 14 19 19 O 1.45393 * 110.06934 * 68.01400 * 17 16 14 20 20 C 1.34350 * 109.00505 * 119.23754 * 19 17 16 21 21 O 1.21474 * 124.89270 * 180.02562 * 20 19 17 22 22 C 1.47427 * 110.21164 * 359.97438 * 20 19 17 23 23 C 1.39621 * 132.54264 * 179.97438 * 22 20 19 24 24 C 1.37945 * 119.79126 * 180.28184 * 23 22 20 25 25 C 1.38397 * 120.32290 * 359.45266 * 24 23 22 26 26 C 1.38495 * 120.21396 * 0.57039 * 25 24 23 27 27 C 1.37545 * 119.94782 * 359.70845 * 26 25 24 28 28 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46773 * 299.99974 * 1 2 3 30 30 H 1.08999 * 109.47493 * 59.99551 * 1 2 3 31 31 H 1.09000 * 109.46773 * 240.00026 * 2 1 3 32 32 H 1.08999 * 109.47493 * 120.00449 * 2 1 3 33 33 H 1.09000 * 109.47190 * 60.00281 * 3 2 1 34 34 H 1.09005 * 109.47078 * 300.00197 * 3 2 1 35 35 H 1.09000 * 109.47109 * 59.99856 * 4 3 2 36 36 H 1.09005 * 109.46943 * 299.99905 * 4 3 2 37 37 H 0.97000 * 119.99270 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.47143 * 55.59568 * 16 14 5 39 39 H 1.08994 * 109.46857 * 295.59339 * 16 14 5 40 40 H 1.07993 * 120.10660 * 0.02562 * 23 22 20 41 41 H 1.07994 * 119.83875 * 179.72350 * 24 23 22 42 42 H 1.07994 * 119.89352 * 180.29550 * 25 24 23 43 43 H 1.07997 * 120.02529 * 179.68289 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2863 3.4706 -1.1871 7 1 4.0170 4.5108 -1.2956 8 6 4.8639 2.7879 -2.2506 9 7 4.7955 3.2849 -3.4653 10 14 5.7376 1.1638 -1.9539 11 1 4.7998 0.0423 -2.2148 12 1 6.9045 1.0555 -2.8659 13 1 6.2030 1.1022 -0.5451 14 6 4.2835 3.4583 1.1674 15 8 4.1775 2.8565 2.2152 16 6 4.6668 4.9158 1.1710 17 6 4.7557 5.4161 2.6141 18 1 3.8303 5.1936 3.1454 19 8 5.8815 4.7920 3.2901 20 6 6.7404 5.7474 3.6829 21 8 7.7815 5.5451 4.2753 22 6 6.2380 7.0767 3.2903 23 6 6.7460 8.3660 3.4607 24 6 6.0391 9.4498 2.9827 25 6 4.8352 9.2642 2.3257 26 6 4.3248 7.9884 2.1533 27 6 5.0185 6.9009 2.6309 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9288 -0.8908 36 1 3.9337 0.9285 0.8892 37 1 5.1984 2.8081 -4.2077 38 1 3.9133 5.4910 0.6328 39 1 5.6340 5.0383 0.6837 40 1 7.6873 8.5146 3.9687 41 1 6.4291 10.4478 3.1180 42 1 4.2899 10.1174 1.9501 43 1 3.3826 7.8474 1.6446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180185988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:43 Heat of formation + Delta-G solvation = -82.564468 kcal Electronic energy + Delta-G solvation = -26595.477941 eV Core-core repulsion = 22799.144863 eV Total energy + Delta-G solvation = -3796.333079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.57267 -38.97285 -38.31703 -37.19044 -35.61749 -34.06254 -32.58735 -31.94074 -31.32529 -30.29415 -28.49373 -25.28728 -24.66167 -24.27168 -22.96155 -21.92988 -20.79516 -20.53097 -19.06099 -17.56691 -17.28500 -16.93360 -16.29079 -16.06996 -15.85558 -15.43452 -14.84696 -14.82174 -14.47763 -14.24405 -13.90585 -13.71985 -13.22952 -13.16302 -13.04983 -12.83957 -12.76903 -12.57369 -12.24897 -11.99662 -11.75217 -11.55455 -11.37756 -11.26254 -11.06461 -10.70721 -10.65736 -10.60050 -10.37457 -10.14098 -10.07133 -9.78075 -9.27142 -9.26510 -9.08005 -8.65496 -7.83958 -6.53737 -4.19717 0.49709 1.05194 2.53194 3.01788 3.18960 3.26308 3.28630 3.55211 3.63297 3.73582 4.00273 4.08022 4.35417 4.63270 4.74511 4.88589 5.01413 5.08345 5.21307 5.22818 5.32387 5.37193 5.45052 5.48565 5.68614 5.74237 5.88160 5.91224 6.03101 6.08278 6.08464 6.12129 6.13340 6.18754 6.21092 6.27833 6.38734 6.46982 6.54083 6.72774 6.86427 6.93700 7.33333 7.58345 7.98583 8.14053 8.86361 9.25044 9.59470 10.56436 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.003898 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.185954 B = 7181.850973 C = 7571.989904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.125 4.125 4 C 0.103 3.897 5 N -0.465 5.465 6 C -0.348 4.348 7 H 0.105 0.895 8 C 0.069 3.931 9 N -0.863 5.863 10 Si 0.879 3.121 11 H -0.273 1.273 12 H -0.289 1.289 13 H -0.261 1.261 14 C 0.484 3.516 15 O -0.585 6.585 16 C -0.122 4.122 17 C 0.136 3.864 18 H 0.128 0.872 19 O -0.289 6.289 20 C 0.515 3.485 21 O -0.463 6.463 22 C -0.193 4.193 23 C -0.039 4.039 24 C -0.131 4.131 25 C -0.081 4.081 26 C -0.095 4.095 27 C -0.086 4.086 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.276 0.724 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.211 9.003 7.098 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.163 4.163 4 C -0.020 4.020 5 N -0.186 5.186 6 C -0.475 4.475 7 H 0.122 0.878 8 C -0.139 4.139 9 N -0.498 5.498 10 Si 0.707 3.293 11 H -0.200 1.200 12 H -0.216 1.216 13 H -0.185 1.185 14 C 0.272 3.728 15 O -0.469 6.469 16 C -0.162 4.162 17 C 0.080 3.920 18 H 0.145 0.855 19 O -0.203 6.203 20 C 0.358 3.642 21 O -0.349 6.349 22 C -0.195 4.195 23 C -0.057 4.057 24 C -0.149 4.149 25 C -0.099 4.099 26 C -0.113 4.113 27 C -0.087 4.087 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.722 8.330 7.681 11.926 hybrid contribution 0.476 -0.676 -0.389 0.914 sum -3.246 7.654 7.292 11.059 Atomic orbital electron populations 1.21737 0.96130 1.00924 1.01715 1.21488 0.95603 0.97479 1.01681 1.21847 0.95963 0.96030 1.02470 1.21619 0.93910 0.85389 1.01083 1.43685 1.57476 1.11817 1.05632 1.19054 1.42008 0.98457 0.87948 0.87793 1.25334 0.95372 0.98358 0.94807 1.69700 1.41388 1.39955 0.98801 0.86884 0.79581 0.83375 0.79412 1.20038 1.21597 1.18478 1.20081 0.79908 0.88887 0.83879 1.90602 1.56430 1.68155 1.31745 1.21698 1.05631 0.96205 0.92630 1.21906 0.89114 0.85928 0.95063 0.85463 1.87498 1.31952 1.33130 1.67701 1.20649 0.82837 0.84329 0.76428 1.90839 1.20485 1.85816 1.37810 1.21007 0.98031 0.95316 1.05123 1.20864 0.99087 0.89838 0.95920 1.21173 0.95540 0.98866 0.99307 1.21420 0.95395 0.96917 0.96169 1.20375 1.00488 0.90601 0.99860 1.20944 0.95166 0.95789 0.96778 0.93264 0.92928 0.92766 0.92270 0.92228 0.92104 0.91169 0.92088 0.91133 0.91419 0.87191 0.87923 0.84821 0.84815 0.84653 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.92 5.93 -26.73 -0.16 -2.08 16 3 C -0.12 -2.30 5.54 -26.73 -0.15 -2.45 16 4 C 0.10 2.22 4.16 -4.04 -0.02 2.21 16 5 N -0.47 -10.73 2.16 -114.81 -0.25 -10.98 16 6 C -0.35 -8.55 9.13 -14.93 -0.14 -8.69 16 7 H 0.10 2.59 7.19 -52.49 -0.38 2.22 16 8 C 0.07 1.76 5.39 -17.46 -0.09 1.67 16 9 N -0.86 -23.08 13.96 55.50 0.77 -22.30 16 10 Si 0.88 20.56 24.75 -169.99 -4.21 16.35 16 11 H -0.27 -6.10 6.77 56.52 0.38 -5.72 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.26 -6.33 7.05 56.52 0.40 -5.93 16 14 C 0.48 10.66 7.55 -10.99 -0.08 10.58 16 15 O -0.59 -14.06 15.06 -6.50 -0.10 -14.16 16 16 C -0.12 -2.17 4.14 -27.88 -0.12 -2.29 16 17 C 0.14 2.18 3.14 -27.84 -0.09 2.09 16 18 H 0.13 1.91 7.99 -51.93 -0.42 1.50 16 19 O -0.29 -5.61 10.19 -44.10 -0.45 -6.06 16 20 C 0.52 9.33 8.58 34.47 0.30 9.63 16 21 O -0.46 -9.41 18.04 -18.92 -0.34 -9.75 16 22 C -0.19 -2.78 6.27 -105.08 -0.66 -3.44 16 23 C -0.04 -0.44 10.10 -39.17 -0.40 -0.84 16 24 C -0.13 -1.16 10.02 -39.63 -0.40 -1.55 16 25 C -0.08 -0.69 10.05 -39.43 -0.40 -1.09 16 26 C -0.10 -0.99 10.03 -39.74 -0.40 -1.39 16 27 C -0.09 -1.15 5.67 -104.26 -0.59 -1.74 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.36 3.12 -51.93 -0.16 1.20 16 36 H 0.07 1.55 7.35 -51.93 -0.38 1.17 16 37 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.11 1.71 7.62 -51.93 -0.40 1.31 16 39 H 0.10 1.92 8.13 -51.93 -0.42 1.50 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -31.23 359.67 -8.13 -39.36 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.96 Total: 3.05 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -3.01 Total: -0.93 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.53 Total: -33.28 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.89 Total: -29.97 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.21 Total: 16.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.23 -8.13 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180185988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.206 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds