Wall clock time and date at job start Tue Mar 31 2020 12:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47293 * 2 1 4 4 C 1.52999 * 109.47235 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47182 * 180.02562 * 4 3 2 6 6 C 1.37101 * 119.99737 * 270.00166 * 5 4 3 7 7 H 1.07994 * 120.00191 * 140.04849 * 6 5 4 8 8 C 1.38954 * 119.99790 * 320.04656 * 6 5 4 9 9 N 1.31415 * 119.99816 * 163.76144 * 8 6 5 10 10 Si 1.86796 * 120.00066 * 343.75715 * 8 6 5 11 11 H 1.48500 * 109.47083 * 95.36808 * 10 8 6 12 12 H 1.48501 * 109.47158 * 215.36542 * 10 8 6 13 13 H 1.48498 * 109.47409 * 335.36758 * 10 8 6 14 14 C 1.34770 * 120.00223 * 90.00034 * 5 4 3 15 15 O 1.21297 * 120.00193 * 5.46784 * 14 5 4 16 16 C 1.50705 * 119.99976 * 185.47485 * 14 5 4 17 17 C 1.52998 * 109.46973 * 175.59595 * 16 14 5 18 18 H 1.09003 * 110.09877 * 306.50442 * 17 16 14 19 19 O 1.45393 * 110.06934 * 68.01400 * 17 16 14 20 20 C 1.34350 * 109.00505 * 119.23754 * 19 17 16 21 21 O 1.21474 * 124.89270 * 180.02562 * 20 19 17 22 22 C 1.47427 * 110.21164 * 359.97438 * 20 19 17 23 23 C 1.39621 * 132.54264 * 179.97438 * 22 20 19 24 24 C 1.37945 * 119.79126 * 180.28184 * 23 22 20 25 25 C 1.38397 * 120.32290 * 359.45266 * 24 23 22 26 26 C 1.38495 * 120.21396 * 0.57039 * 25 24 23 27 27 C 1.37545 * 119.94782 * 359.70845 * 26 25 24 28 28 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46773 * 299.99974 * 1 2 3 30 30 H 1.08999 * 109.47493 * 59.99551 * 1 2 3 31 31 H 1.09000 * 109.46773 * 240.00026 * 2 1 3 32 32 H 1.08999 * 109.47493 * 120.00449 * 2 1 3 33 33 H 1.09000 * 109.47190 * 60.00281 * 3 2 1 34 34 H 1.09005 * 109.47078 * 300.00197 * 3 2 1 35 35 H 1.09000 * 109.47109 * 59.99856 * 4 3 2 36 36 H 1.09005 * 109.46943 * 299.99905 * 4 3 2 37 37 H 0.97000 * 119.99270 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.47143 * 55.59568 * 16 14 5 39 39 H 1.08994 * 109.46857 * 295.59339 * 16 14 5 40 40 H 1.07993 * 120.10660 * 0.02562 * 23 22 20 41 41 H 1.07994 * 119.83875 * 179.72350 * 24 23 22 42 42 H 1.07994 * 119.89352 * 180.29550 * 25 24 23 43 43 H 1.07997 * 120.02529 * 179.68289 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2863 3.4706 -1.1871 7 1 4.0170 4.5108 -1.2956 8 6 4.8639 2.7879 -2.2506 9 7 4.7955 3.2849 -3.4653 10 14 5.7376 1.1638 -1.9539 11 1 4.7998 0.0423 -2.2148 12 1 6.9045 1.0555 -2.8659 13 1 6.2030 1.1022 -0.5451 14 6 4.2835 3.4583 1.1674 15 8 4.1775 2.8565 2.2152 16 6 4.6668 4.9158 1.1710 17 6 4.7557 5.4161 2.6141 18 1 3.8303 5.1936 3.1454 19 8 5.8815 4.7920 3.2901 20 6 6.7404 5.7474 3.6829 21 8 7.7815 5.5451 4.2753 22 6 6.2380 7.0767 3.2903 23 6 6.7460 8.3660 3.4607 24 6 6.0391 9.4498 2.9827 25 6 4.8352 9.2642 2.3257 26 6 4.3248 7.9884 2.1533 27 6 5.0185 6.9009 2.6309 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9288 -0.8908 36 1 3.9337 0.9285 0.8892 37 1 5.1984 2.8081 -4.2077 38 1 3.9133 5.4910 0.6328 39 1 5.6340 5.0383 0.6837 40 1 7.6873 8.5146 3.9687 41 1 6.4291 10.4478 3.1180 42 1 4.2899 10.1174 1.9501 43 1 3.3826 7.8474 1.6446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180185988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:42 Heat of formation + Delta-G solvation = -99.019614 kcal Electronic energy + Delta-G solvation = -26596.191490 eV Core-core repulsion = 22799.144863 eV Total energy + Delta-G solvation = -3797.046627 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.79747 -40.72789 -39.37362 -38.56629 -37.30817 -35.62563 -33.88353 -33.77252 -32.24890 -31.46206 -29.89247 -26.99816 -26.17447 -25.26185 -24.33844 -23.00845 -22.13853 -21.72518 -20.85137 -18.97598 -18.63307 -18.36391 -17.95398 -17.50230 -17.12381 -16.83786 -16.31295 -16.20647 -15.76725 -15.63622 -15.20991 -14.93366 -14.72349 -14.55952 -14.44970 -14.29660 -13.93114 -13.79671 -13.74598 -13.33419 -13.11101 -12.97749 -12.84865 -12.73986 -12.23827 -12.16656 -12.15261 -11.95903 -11.88559 -11.78160 -11.47504 -11.41527 -11.07815 -10.55290 -10.12897 -9.93116 -9.72275 -8.52781 -6.17856 -0.49508 0.23317 1.13148 1.27477 1.35311 1.37119 1.82477 1.99814 2.13556 2.47215 2.68068 2.69413 2.90150 3.08270 3.62170 3.83232 3.87242 3.98290 4.07369 4.12414 4.20129 4.25939 4.30679 4.34749 4.39421 4.54750 4.56555 4.60051 4.74874 4.81616 4.88970 4.92804 4.93383 5.05460 5.13156 5.23155 5.29763 5.34498 5.37398 5.41606 5.49771 5.62502 5.82649 6.04011 6.22692 6.23583 6.92433 7.36982 7.74477 8.60457 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.003898 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.185954 B = 7181.850973 C = 7571.989904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C -0.114 4.114 4 C 0.096 3.904 5 N -0.478 5.478 6 C -0.336 4.336 7 H 0.100 0.900 8 C 0.036 3.964 9 N -0.894 5.894 10 Si 0.916 3.084 11 H -0.256 1.256 12 H -0.288 1.288 13 H -0.281 1.281 14 C 0.477 3.523 15 O -0.607 6.607 16 C -0.113 4.113 17 C 0.137 3.863 18 H 0.133 0.867 19 O -0.326 6.326 20 C 0.507 3.493 21 O -0.504 6.504 22 C -0.220 4.220 23 C -0.044 4.044 24 C -0.119 4.119 25 C -0.063 4.063 26 C -0.096 4.096 27 C -0.093 4.093 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.279 0.721 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.141 0.859 41 H 0.173 0.827 42 H 0.178 0.822 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.823 11.328 6.842 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.152 4.152 4 C -0.027 4.027 5 N -0.199 5.199 6 C -0.464 4.464 7 H 0.117 0.883 8 C -0.168 4.168 9 N -0.531 5.531 10 Si 0.744 3.256 11 H -0.182 1.182 12 H -0.215 1.215 13 H -0.206 1.206 14 C 0.267 3.733 15 O -0.493 6.493 16 C -0.152 4.152 17 C 0.082 3.918 18 H 0.150 0.850 19 O -0.241 6.241 20 C 0.353 3.647 21 O -0.394 6.394 22 C -0.222 4.222 23 C -0.062 4.062 24 C -0.136 4.136 25 C -0.081 4.081 26 C -0.113 4.113 27 C -0.093 4.093 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.154 0.846 39 H 0.109 0.891 40 H 0.159 0.841 41 H 0.190 0.810 42 H 0.196 0.804 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.359 10.650 7.413 14.039 hybrid contribution 0.958 -1.301 -0.251 1.635 sum -4.401 9.349 7.162 12.572 Atomic orbital electron populations 1.21701 0.93898 1.02409 1.02028 1.21498 0.97555 0.95174 1.01910 1.21747 0.93506 0.98163 1.01805 1.21726 0.96117 0.84673 1.00147 1.43864 1.58091 1.12384 1.05529 1.19050 1.40899 0.98329 0.88094 0.88265 1.25719 0.96053 1.00233 0.94841 1.69736 1.42872 1.41169 0.99321 0.86298 0.79203 0.82189 0.77880 1.18233 1.21485 1.20616 1.20797 0.78825 0.90501 0.83147 1.90581 1.57113 1.69186 1.32405 1.21671 1.05490 0.93659 0.94425 1.21918 0.88356 0.88061 0.93486 0.84975 1.87423 1.33184 1.35284 1.68185 1.21260 0.82103 0.85861 0.75491 1.90781 1.22072 1.86690 1.39849 1.20797 0.99112 0.94498 1.07759 1.21159 0.99786 0.89264 0.96003 1.21649 0.95052 0.99559 0.97358 1.21972 0.94903 0.97237 0.93943 1.20783 1.01064 0.90336 0.99162 1.20787 0.95496 0.94582 0.98464 0.91218 0.92466 0.92636 0.92304 0.91787 0.92361 0.92044 0.92817 0.92100 0.91122 0.84569 0.89079 0.84090 0.80954 0.80433 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.91 71.98 0.71 -2.69 16 2 C -0.12 -3.65 5.93 30.59 0.18 -3.47 16 3 C -0.11 -4.16 5.54 30.59 0.17 -3.99 16 4 C 0.10 4.18 4.16 86.38 0.36 4.54 16 5 N -0.48 -22.26 2.16 -635.53 -1.37 -23.63 16 6 C -0.34 -16.61 9.13 84.04 0.77 -15.84 16 7 H 0.10 4.94 7.19 -2.91 -0.02 4.92 16 8 C 0.04 1.85 5.39 84.93 0.46 2.31 16 9 N -0.89 -47.82 13.96 21.66 0.30 -47.51 16 10 Si 0.92 42.59 24.75 68.60 1.70 44.29 16 11 H -0.26 -11.10 6.77 99.48 0.67 -10.43 16 12 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.28 -13.85 7.05 99.48 0.70 -13.15 16 14 C 0.48 21.39 7.55 87.66 0.66 22.06 16 15 O -0.61 -29.96 15.06 8.44 0.13 -29.83 16 16 C -0.11 -4.05 4.14 29.85 0.12 -3.92 16 17 C 0.14 4.46 3.14 29.88 0.09 4.55 16 18 H 0.13 4.03 7.99 -2.39 -0.02 4.01 16 19 O -0.33 -13.37 10.19 -48.25 -0.49 -13.86 16 20 C 0.51 19.39 8.58 70.24 0.60 19.99 16 21 O -0.50 -21.84 18.04 19.61 0.35 -21.49 16 22 C -0.22 -6.31 6.27 -20.16 -0.13 -6.43 16 23 C -0.04 -0.92 10.10 22.53 0.23 -0.69 16 24 C -0.12 -1.55 10.02 22.24 0.22 -1.33 16 25 C -0.06 -0.75 10.05 22.37 0.22 -0.52 16 26 C -0.10 -1.64 10.03 22.17 0.22 -1.41 16 27 C -0.09 -2.36 5.67 -19.63 -0.11 -2.48 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 34 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.05 2.41 3.12 -2.39 -0.01 2.40 16 36 H 0.06 2.74 7.35 -2.38 -0.02 2.72 16 37 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 38 H 0.14 4.08 7.62 -2.38 -0.02 4.06 16 39 H 0.09 3.49 8.13 -2.39 -0.02 3.47 16 40 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 43 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -70.86 359.67 6.39 -64.47 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.98 Total: 16.89 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 4.79 Total: 10.68 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -1.07 Total: -71.15 kcal Atomic # 8 Polarization: -65.17 SS G_CDS: -0.01 Total: -65.18 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.70 Total: 44.29 kcal Total: -70.86 6.39 -64.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180185988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.549 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds