Wall clock time and date at job start Tue Mar 31 2020 11:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00493 * 2 1 4 4 C 1.53005 * 109.46978 * 124.99519 * 3 2 1 5 5 C 1.53002 * 109.46906 * 60.00493 * 4 3 2 6 6 N 1.46497 * 109.46587 * 180.02562 * 4 3 2 7 7 C 1.34784 * 119.99897 * 179.97438 * 6 4 3 8 8 O 1.21546 * 119.99579 * 0.02562 * 7 6 4 9 9 C 1.47880 * 120.00284 * 179.97438 * 7 6 4 10 10 C 1.39922 * 120.02387 * 0.02632 * 9 7 6 11 11 C 1.38329 * 120.35941 * 179.97438 * 10 9 7 12 12 C 1.37757 * 120.40953 * 359.97438 * 11 10 9 13 13 C 1.40743 * 120.03926 * 0.04138 * 12 11 10 14 14 C 1.41440 * 120.17533 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00162 * 334.71613 * 14 13 12 16 16 C 1.39945 * 120.00012 * 154.71540 * 14 13 12 17 17 N 1.30829 * 119.99579 * 342.80544 * 16 14 13 18 18 Si 1.86790 * 120.00018 * 162.80350 * 16 14 13 19 19 H 1.48507 * 109.47140 * 60.00147 * 18 16 14 20 20 H 1.48497 * 109.47419 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47429 * 300.00113 * 18 16 14 22 22 C 1.38991 * 120.02776 * 180.02562 * 9 7 6 23 23 C 1.50700 * 109.47230 * 300.00331 * 4 3 2 24 24 O 1.20819 * 120.00017 * 95.00140 * 23 4 3 25 25 O 1.34231 * 119.99656 * 274.99970 * 23 4 3 26 26 C 1.45203 * 116.99540 * 179.97438 * 25 23 4 27 27 H 1.08001 * 120.00211 * 179.97438 * 1 2 3 28 28 H 1.08008 * 119.99684 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00066 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46492 * 4.99906 * 3 2 1 31 31 H 1.08994 * 109.47516 * 244.99837 * 3 2 1 32 32 H 1.09000 * 109.46569 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47130 * 299.99344 * 5 4 3 34 34 H 1.08994 * 109.47175 * 59.99934 * 5 4 3 35 35 H 0.97001 * 120.00461 * 0.02562 * 6 4 3 36 36 H 1.07998 * 119.82146 * 0.02562 * 10 9 7 37 37 H 1.08006 * 119.79561 * 180.02562 * 11 10 9 38 38 H 1.07999 * 119.97780 * 180.02562 * 12 11 10 39 39 H 0.96998 * 119.99202 * 179.97438 * 17 16 14 40 40 H 1.08005 * 120.20151 * 359.75040 * 22 9 7 41 41 H 1.09002 * 109.47030 * 180.02562 * 26 25 23 42 42 H 1.09001 * 109.47377 * 300.00285 * 26 25 23 43 43 H 1.08997 * 109.47268 * 60.00376 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 4.0245 0.1727 1.0560 6 7 3.7672 2.6019 1.1820 7 6 4.6835 2.8510 2.1386 8 8 4.9026 2.0227 3.0006 9 6 5.4229 4.1317 2.1386 10 6 5.1714 5.0854 1.1461 11 6 5.8587 6.2858 1.1398 12 6 6.7981 6.5566 2.1104 13 6 7.0648 5.6093 3.1165 14 6 8.0283 5.8846 4.1148 15 1 8.8295 6.5806 3.9147 16 6 7.9434 5.2550 5.3617 17 7 6.8245 4.6878 5.7332 18 14 9.4275 5.2247 6.4956 19 1 9.8289 6.6165 6.8230 20 1 9.0803 4.5031 7.7462 21 1 10.5530 4.5309 5.8194 22 6 6.3683 4.3889 3.1245 23 6 2.2638 1.1982 2.4694 24 8 2.1262 0.1120 2.9803 25 8 1.7298 2.2850 3.0487 26 6 0.9996 2.0802 4.2870 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6214 1.4026 -0.9313 32 1 4.7168 0.1929 1.8977 33 1 3.4795 -0.7712 1.0561 34 1 4.5823 0.2702 0.1247 35 1 3.5920 3.2631 0.4943 36 1 4.4361 4.8835 0.3813 37 1 5.6570 7.0157 0.3697 38 1 7.3303 7.4963 2.0990 39 1 6.7659 4.2511 6.5974 40 1 6.5628 3.6573 3.8948 41 1 0.6210 3.0365 4.6479 42 1 0.1643 1.4030 4.1086 43 1 1.6651 1.6474 5.0339 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188689679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:53 Heat of formation + Delta-G solvation = -82.341176 kcal Electronic energy + Delta-G solvation = -26974.197014 eV Core-core repulsion = 23177.873618 eV Total energy + Delta-G solvation = -3796.323396 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.85304 -39.08621 -37.37583 -36.64025 -35.89561 -33.92044 -33.62996 -31.16297 -29.58082 -29.32815 -27.83408 -26.95986 -25.34534 -23.95803 -22.73818 -21.01579 -20.62082 -19.56885 -19.36884 -17.87690 -17.58599 -16.69286 -16.46324 -15.92472 -15.32991 -15.18638 -14.78637 -14.64981 -14.29814 -14.00257 -13.74937 -13.44056 -13.23296 -13.04385 -12.65832 -12.59513 -12.51591 -12.11210 -12.00187 -11.85929 -11.65684 -11.36696 -11.22579 -11.17865 -11.10553 -10.75234 -10.56326 -10.54414 -10.44042 -10.03695 -9.72165 -9.57619 -9.22778 -9.02801 -8.87560 -7.66256 -7.53721 -6.81087 -4.43268 2.03329 2.14098 2.39406 2.79853 2.86534 3.06966 3.08530 3.15422 3.44652 3.81921 3.91120 4.57275 4.59134 4.66123 4.72311 4.99074 5.08196 5.24462 5.36093 5.37843 5.50562 5.58315 5.63918 5.67079 5.68978 5.83559 5.86743 6.05298 6.24758 6.34311 6.42458 6.51147 6.60441 6.64074 6.69231 6.96035 6.98647 7.19035 7.35532 7.66069 7.71192 7.88566 7.95899 8.01833 8.15879 8.47992 8.77851 8.80807 8.85178 10.13572 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.003779 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.580715 B = 7408.330998 C = 8142.236593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.153 4.153 3 C -0.095 4.095 4 C 0.198 3.802 5 C -0.157 4.157 6 N -0.725 5.725 7 C 0.570 3.430 8 O -0.537 6.537 9 C -0.126 4.126 10 C -0.216 4.216 11 C -0.097 4.097 12 C -0.211 4.211 13 C 0.099 3.901 14 C -0.461 4.461 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.784 5.784 18 Si 0.911 3.089 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.090 4.090 23 C 0.472 3.528 24 O -0.503 6.503 25 O -0.349 6.349 26 C 0.037 3.963 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.405 0.595 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.330 -5.389 -9.080 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.172 4.172 3 C -0.133 4.133 4 C 0.109 3.891 5 C -0.214 4.214 6 N -0.381 5.381 7 C 0.362 3.638 8 O -0.415 6.415 9 C -0.129 4.129 10 C -0.236 4.236 11 C -0.116 4.116 12 C -0.231 4.231 13 C 0.097 3.903 14 C -0.490 4.490 15 H 0.099 0.901 16 C -0.146 4.146 17 N -0.408 5.408 18 Si 0.735 3.265 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.187 1.187 22 C -0.110 4.110 23 C 0.313 3.687 24 O -0.390 6.390 25 O -0.264 6.264 26 C -0.057 4.057 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.136 0.864 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.242 0.758 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.151 0.849 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.353 -6.430 -8.034 14.597 hybrid contribution 0.298 0.297 0.495 0.650 sum -10.055 -6.132 -7.539 13.984 Atomic orbital electron populations 1.23876 0.95814 1.02039 1.00499 1.22853 0.96070 0.97955 1.00303 1.21020 0.97844 0.97334 0.97060 1.20054 0.91405 0.87793 0.89836 1.22197 0.99066 0.95883 1.04300 1.46036 1.41608 1.17944 1.32557 1.18897 0.77947 0.87418 0.79547 1.90699 1.65848 1.47829 1.37080 1.19378 1.01025 0.92949 0.99559 1.20333 1.05673 0.96602 1.01035 1.20434 0.97241 0.95893 0.97989 1.21111 1.02852 0.99100 1.00009 1.17585 0.91243 0.89913 0.91580 1.19560 1.10207 1.22872 0.96314 0.90102 1.25959 0.96573 0.93127 0.98911 1.69779 1.24833 1.25604 1.20560 0.86324 0.81873 0.79420 0.78904 1.18968 1.20237 1.18708 1.21634 0.95465 0.97303 0.96590 1.23848 0.76313 0.82334 0.86169 1.90601 1.56867 1.28286 1.63210 1.86534 1.64251 1.37373 1.38264 1.23219 0.95390 1.03041 0.84014 0.88139 0.88531 0.86384 0.89782 0.88265 0.89425 0.90654 0.90976 0.75796 0.89163 0.88853 0.88604 0.90403 0.84883 0.88269 0.92391 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.72 14.32 29.02 0.42 -1.31 16 2 C -0.15 -1.57 8.04 -36.02 -0.29 -1.86 16 3 C -0.10 -1.00 4.83 -27.88 -0.13 -1.13 16 4 C 0.20 2.91 0.80 -132.97 -0.11 2.80 16 5 C -0.16 -2.30 7.68 37.16 0.29 -2.01 16 6 N -0.73 -11.73 4.83 -49.60 -0.24 -11.97 16 7 C 0.57 12.18 7.09 -12.31 -0.09 12.09 16 8 O -0.54 -13.19 13.54 5.33 0.07 -13.12 16 9 C -0.13 -2.91 5.87 -105.04 -0.62 -3.52 16 10 C -0.22 -4.39 9.55 -38.92 -0.37 -4.76 16 11 C -0.10 -2.02 10.01 -39.72 -0.40 -2.41 16 12 C -0.21 -4.91 9.78 -38.81 -0.38 -5.29 16 13 C 0.10 2.59 5.56 -106.87 -0.59 1.99 16 14 C -0.46 -11.98 9.05 -37.72 -0.34 -12.32 16 15 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 16 C 0.07 1.85 5.15 -17.34 -0.09 1.76 16 17 N -0.78 -20.68 10.96 55.55 0.61 -20.07 16 18 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 22 C -0.09 -2.36 8.24 -38.44 -0.32 -2.68 16 23 C 0.47 8.29 4.76 36.01 0.17 8.46 16 24 O -0.50 -9.64 15.66 -18.74 -0.29 -9.94 16 25 O -0.35 -6.08 10.16 -39.26 -0.40 -6.47 16 26 C 0.04 0.53 10.56 101.05 1.07 1.60 16 27 H 0.10 0.82 8.06 -52.49 -0.42 0.39 16 28 H 0.10 0.82 7.84 -52.48 -0.41 0.41 16 29 H 0.12 1.16 6.80 -52.49 -0.36 0.81 16 30 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.61 6.17 -51.93 -0.32 1.29 16 33 H 0.07 1.00 6.25 -51.93 -0.32 0.67 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.41 5.44 6.49 -40.82 -0.26 5.18 16 36 H 0.09 1.48 6.38 -52.49 -0.33 1.14 16 37 H 0.09 1.63 8.06 -52.48 -0.42 1.20 16 38 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 39 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 40 H 0.13 3.81 5.76 -52.48 -0.30 3.51 16 41 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 43 H 0.06 0.99 8.13 -51.93 -0.42 0.56 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -31.50 361.91 -7.27 -38.77 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.65 Total: 12.23 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.79 Total: -8.58 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.37 Total: -32.05 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.62 Total: -29.53 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.50 -7.27 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188689679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.573 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds