Wall clock time and date at job start Tue Mar 31 2020 11:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00493 * 2 1 4 4 C 1.53005 * 109.46978 * 124.99519 * 3 2 1 5 5 C 1.53002 * 109.46906 * 60.00493 * 4 3 2 6 6 N 1.46497 * 109.46587 * 180.02562 * 4 3 2 7 7 C 1.34784 * 119.99897 * 179.97438 * 6 4 3 8 8 O 1.21546 * 119.99579 * 0.02562 * 7 6 4 9 9 C 1.47880 * 120.00284 * 179.97438 * 7 6 4 10 10 C 1.39922 * 120.02387 * 0.02632 * 9 7 6 11 11 C 1.38329 * 120.35941 * 179.97438 * 10 9 7 12 12 C 1.37757 * 120.40953 * 359.97438 * 11 10 9 13 13 C 1.40743 * 120.03926 * 0.04138 * 12 11 10 14 14 C 1.41440 * 120.17533 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00162 * 334.71613 * 14 13 12 16 16 C 1.39945 * 120.00012 * 154.71540 * 14 13 12 17 17 N 1.30829 * 119.99579 * 342.80544 * 16 14 13 18 18 Si 1.86790 * 120.00018 * 162.80350 * 16 14 13 19 19 H 1.48507 * 109.47140 * 60.00147 * 18 16 14 20 20 H 1.48497 * 109.47419 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47429 * 300.00113 * 18 16 14 22 22 C 1.38991 * 120.02776 * 180.02562 * 9 7 6 23 23 C 1.50700 * 109.47230 * 300.00331 * 4 3 2 24 24 O 1.20819 * 120.00017 * 95.00140 * 23 4 3 25 25 O 1.34231 * 119.99656 * 274.99970 * 23 4 3 26 26 C 1.45203 * 116.99540 * 179.97438 * 25 23 4 27 27 H 1.08001 * 120.00211 * 179.97438 * 1 2 3 28 28 H 1.08008 * 119.99684 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00066 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46492 * 4.99906 * 3 2 1 31 31 H 1.08994 * 109.47516 * 244.99837 * 3 2 1 32 32 H 1.09000 * 109.46569 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47130 * 299.99344 * 5 4 3 34 34 H 1.08994 * 109.47175 * 59.99934 * 5 4 3 35 35 H 0.97001 * 120.00461 * 0.02562 * 6 4 3 36 36 H 1.07998 * 119.82146 * 0.02562 * 10 9 7 37 37 H 1.08006 * 119.79561 * 180.02562 * 11 10 9 38 38 H 1.07999 * 119.97780 * 180.02562 * 12 11 10 39 39 H 0.96998 * 119.99202 * 179.97438 * 17 16 14 40 40 H 1.08005 * 120.20151 * 359.75040 * 22 9 7 41 41 H 1.09002 * 109.47030 * 180.02562 * 26 25 23 42 42 H 1.09001 * 109.47377 * 300.00285 * 26 25 23 43 43 H 1.08997 * 109.47268 * 60.00376 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 4.0245 0.1727 1.0560 6 7 3.7672 2.6019 1.1820 7 6 4.6835 2.8510 2.1386 8 8 4.9026 2.0227 3.0006 9 6 5.4229 4.1317 2.1386 10 6 5.1714 5.0854 1.1461 11 6 5.8587 6.2858 1.1398 12 6 6.7981 6.5566 2.1104 13 6 7.0648 5.6093 3.1165 14 6 8.0283 5.8846 4.1148 15 1 8.8295 6.5806 3.9147 16 6 7.9434 5.2550 5.3617 17 7 6.8245 4.6878 5.7332 18 14 9.4275 5.2247 6.4956 19 1 9.8289 6.6165 6.8230 20 1 9.0803 4.5031 7.7462 21 1 10.5530 4.5309 5.8194 22 6 6.3683 4.3889 3.1245 23 6 2.2638 1.1982 2.4694 24 8 2.1262 0.1120 2.9803 25 8 1.7298 2.2850 3.0487 26 6 0.9996 2.0802 4.2870 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6214 1.4026 -0.9313 32 1 4.7168 0.1929 1.8977 33 1 3.4795 -0.7712 1.0561 34 1 4.5823 0.2702 0.1247 35 1 3.5920 3.2631 0.4943 36 1 4.4361 4.8835 0.3813 37 1 5.6570 7.0157 0.3697 38 1 7.3303 7.4963 2.0990 39 1 6.7659 4.2511 6.5974 40 1 6.5628 3.6573 3.8948 41 1 0.6210 3.0365 4.6479 42 1 0.1643 1.4030 4.1086 43 1 1.6651 1.6474 5.0339 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188689679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:52 Heat of formation + Delta-G solvation = -101.285523 kcal Electronic energy + Delta-G solvation = -26975.018503 eV Core-core repulsion = 23177.873618 eV Total energy + Delta-G solvation = -3797.144884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.19988 -40.66711 -38.97189 -38.03602 -37.22598 -35.62836 -34.89202 -32.65324 -31.32594 -30.91548 -29.02813 -27.91888 -27.19555 -25.23386 -24.31577 -22.79693 -21.90527 -20.93575 -20.50141 -19.54416 -18.97781 -18.09845 -17.91127 -17.37233 -16.91132 -16.50589 -16.43029 -15.91635 -15.71718 -15.45207 -15.05426 -14.92621 -14.59846 -14.49263 -14.25616 -13.97053 -13.76218 -13.47988 -13.26925 -13.09758 -13.01895 -12.91857 -12.80703 -12.50466 -12.39085 -12.21145 -12.03219 -11.86350 -11.84111 -11.78264 -11.49601 -11.06550 -10.74806 -10.34797 -10.29740 -9.46795 -9.36015 -8.65753 -6.37412 0.37135 1.02873 1.05437 1.29136 1.35522 1.47020 1.49632 1.62776 2.06111 2.15916 2.19905 2.79614 3.51201 3.57183 3.72202 3.79206 3.92693 4.14204 4.17123 4.20174 4.24236 4.45760 4.54646 4.59780 4.62527 4.64989 4.66232 4.83008 4.92807 5.00481 5.09188 5.15845 5.22423 5.26324 5.32664 5.33242 5.53364 5.69544 5.78786 5.87768 5.94208 6.06794 6.30386 6.47947 6.62818 6.67152 6.89162 6.96170 7.24831 8.30435 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.003779 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.580715 B = 7408.330998 C = 8142.236593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.171 4.171 3 C -0.086 4.086 4 C 0.195 3.805 5 C -0.154 4.154 6 N -0.700 5.700 7 C 0.569 3.431 8 O -0.579 6.579 9 C -0.137 4.137 10 C -0.192 4.192 11 C -0.095 4.095 12 C -0.215 4.215 13 C 0.067 3.933 14 C -0.499 4.499 15 H 0.084 0.916 16 C 0.030 3.970 17 N -0.827 5.827 18 Si 0.980 3.020 19 H -0.252 1.252 20 H -0.274 1.274 21 H -0.261 1.261 22 C -0.129 4.129 23 C 0.464 3.536 24 O -0.529 6.529 25 O -0.363 6.363 26 C 0.031 3.969 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.422 0.578 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.108 0.892 39 H 0.284 0.716 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.077 0.923 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 -4.423 -12.095 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C -0.123 4.123 4 C 0.107 3.893 5 C -0.212 4.212 6 N -0.356 5.356 7 C 0.360 3.640 8 O -0.459 6.459 9 C -0.140 4.140 10 C -0.211 4.211 11 C -0.113 4.113 12 C -0.235 4.235 13 C 0.065 3.935 14 C -0.529 4.529 15 H 0.102 0.898 16 C -0.184 4.184 17 N -0.452 5.452 18 Si 0.801 3.199 19 H -0.176 1.176 20 H -0.199 1.199 21 H -0.185 1.185 22 C -0.149 4.149 23 C 0.306 3.694 24 O -0.417 6.417 25 O -0.279 6.279 26 C -0.063 4.063 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.148 0.852 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.262 0.738 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.144 0.856 42 H 0.096 0.904 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.897 -5.432 -11.106 17.158 hybrid contribution 0.591 -0.006 1.265 1.396 sum -11.306 -5.438 -9.841 15.945 Atomic orbital electron populations 1.24084 0.95678 1.02999 0.98909 1.22897 0.96495 0.97868 1.01713 1.21078 0.97282 0.98016 0.95908 1.20369 0.91833 0.86618 0.90473 1.22177 0.98594 0.96727 1.03684 1.45742 1.39756 1.18958 1.31177 1.18756 0.78663 0.86532 0.80089 1.90696 1.67311 1.48863 1.39030 1.19688 1.00336 0.94531 0.99441 1.20902 1.04951 0.95087 1.00178 1.20943 0.95574 0.96850 0.97945 1.21432 1.03370 0.98939 0.99734 1.17917 0.92046 0.90639 0.92899 1.19838 1.11213 1.24485 0.97347 0.89827 1.26815 0.99071 0.92318 1.00236 1.69891 1.26962 1.27341 1.21045 0.85278 0.78007 0.79926 0.76715 1.17555 1.19914 1.18512 1.21415 0.98387 0.97303 0.97823 1.24486 0.76048 0.82025 0.86793 1.90579 1.57949 1.29155 1.64010 1.86512 1.64562 1.37615 1.39173 1.23451 0.95183 1.05001 0.82628 0.87267 0.87606 0.86464 0.88472 0.85198 0.93825 0.89470 0.88281 0.73786 0.83994 0.84126 0.87414 0.90534 0.88671 0.85609 0.90442 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 14.32 67.78 0.97 -1.84 16 2 C -0.17 -3.01 8.04 25.65 0.21 -2.80 16 3 C -0.09 -1.47 4.83 29.85 0.14 -1.33 16 4 C 0.20 5.38 0.80 2.86 0.00 5.38 16 5 C -0.15 -4.39 7.68 71.98 0.55 -3.83 16 6 N -0.70 -21.04 4.83 -429.12 -2.07 -23.11 16 7 C 0.57 24.30 7.09 86.80 0.62 24.91 16 8 O -0.58 -29.77 13.54 -3.86 -0.05 -29.82 16 9 C -0.14 -6.28 5.87 -20.14 -0.12 -6.40 16 10 C -0.19 -7.09 9.55 22.70 0.22 -6.87 16 11 C -0.10 -3.59 10.01 22.18 0.22 -3.37 16 12 C -0.21 -9.81 9.78 22.77 0.22 -9.58 16 13 C 0.07 3.62 5.56 -21.32 -0.12 3.50 16 14 C -0.50 -27.17 9.05 23.47 0.21 -26.96 16 15 H 0.08 4.28 7.90 -2.91 -0.02 4.26 16 16 C 0.03 1.59 5.15 85.26 0.44 2.03 16 17 N -0.83 -46.60 10.96 21.83 0.24 -46.36 16 18 Si 0.98 40.06 29.59 68.60 2.03 42.09 16 19 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 C -0.13 -7.08 8.24 23.01 0.19 -6.89 16 23 C 0.46 16.05 4.76 71.24 0.34 16.39 16 24 O -0.53 -20.47 15.66 21.99 0.34 -20.12 16 25 O -0.36 -12.40 10.16 -51.42 -0.52 -12.93 16 26 C 0.03 0.86 10.56 113.37 1.20 2.06 16 27 H 0.11 1.49 8.06 -2.91 -0.02 1.47 16 28 H 0.11 1.44 7.84 -2.91 -0.02 1.42 16 29 H 0.12 2.05 6.80 -2.91 -0.02 2.03 16 30 H 0.10 1.45 7.79 -2.39 -0.02 1.43 16 31 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.65 6.17 -2.39 -0.01 1.63 16 33 H 0.09 2.24 6.25 -2.39 -0.01 2.22 16 34 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.42 9.45 6.49 -92.71 -0.60 8.84 16 36 H 0.14 3.74 6.38 -2.91 -0.02 3.73 16 37 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 38 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.28 14.93 8.30 -92.71 -0.77 14.16 16 40 H 0.10 5.91 5.76 -2.91 -0.02 5.89 16 41 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.08 1.84 8.13 -2.39 -0.02 1.83 16 43 H 0.04 1.33 8.13 -2.39 -0.02 1.31 16 Total: -1.00 -75.27 361.91 5.69 -69.58 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.43 Total: 36.28 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 5.29 Total: -15.61 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -1.83 Total: -69.47 kcal Atomic # 8 Polarization: -62.64 SS G_CDS: -0.23 Total: -62.87 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -75.27 5.69 -69.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188689679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.705 kcal (2) G-P(sol) polarization free energy of solvation -75.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds