Wall clock time and date at job start Tue Mar 31 2020 12:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47001 * 2 1 4 4 C 1.52998 * 109.47001 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47179 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99716 * 269.99945 * 5 4 3 7 7 C 1.50694 * 109.47047 * 269.99809 * 6 5 4 8 8 H 1.08004 * 120.00393 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99992 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00177 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99977 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46880 * 59.99971 * 11 9 7 13 13 H 1.48496 * 109.47014 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47253 * 300.00221 * 11 9 7 15 15 C 1.34776 * 120.00321 * 89.99207 * 5 4 3 16 16 S 1.71201 * 119.99951 * 180.02562 * 15 5 4 17 17 N 1.34770 * 119.99918 * 0.02562 * 15 5 4 18 18 C 1.39341 * 120.00042 * 185.45510 * 17 15 5 19 19 C 1.38809 * 120.16319 * 44.38734 * 18 17 15 20 20 C 1.38052 * 120.07626 * 179.97438 * 19 18 17 21 21 C 1.38545 * 120.40873 * 0.02562 * 20 19 18 22 22 C 1.37820 * 120.33491 * 0.02562 * 21 20 19 23 23 C 1.39710 * 119.91153 * 359.97438 * 22 21 20 24 24 C 1.43195 * 120.20094 * 180.02562 * 23 22 21 25 25 N 6.19984 * 134.30580 * 82.52018 * 2 1 3 26 26 H 1.08999 * 109.46754 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47595 * 300.00165 * 1 2 3 28 28 H 1.09003 * 109.47287 * 60.00455 * 1 2 3 29 29 H 1.08997 * 109.47595 * 239.99835 * 2 1 3 30 30 H 1.09003 * 109.47287 * 119.99545 * 2 1 3 31 31 H 1.08997 * 109.47081 * 59.99520 * 3 2 1 32 32 H 1.09003 * 109.46729 * 299.99887 * 3 2 1 33 33 H 1.08997 * 109.47595 * 59.99835 * 4 3 2 34 34 H 1.09003 * 109.47287 * 299.99545 * 4 3 2 35 35 H 1.09000 * 109.47056 * 29.99791 * 6 5 4 36 36 H 1.09001 * 109.46923 * 149.99734 * 6 5 4 37 37 H 0.96993 * 120.00188 * 179.97438 * 10 9 7 38 38 H 0.97002 * 120.00105 * 5.45680 * 17 15 5 39 39 H 1.07998 * 119.96553 * 0.25413 * 19 18 17 40 40 H 1.07995 * 119.79838 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.83374 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.04489 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3019 3.5151 -1.2685 7 6 5.7250 3.2785 -1.7042 8 1 6.3824 2.6741 -1.0968 9 6 6.1881 3.8347 -2.8778 10 7 5.3881 4.5720 -3.6168 11 14 7.9524 3.5420 -3.4176 12 1 8.1802 2.0855 -3.5964 13 1 8.1993 4.2426 -4.7034 14 1 8.8799 4.0647 -2.3824 15 6 4.2833 3.4585 1.1674 16 16 4.8533 5.0728 1.1680 17 7 4.0595 2.8224 2.3343 18 6 4.1824 3.5124 3.5386 19 6 3.6409 4.7835 3.6726 20 6 3.7632 5.4653 4.8668 21 6 4.4257 4.8891 5.9386 22 6 4.9707 3.6284 5.8238 23 6 4.8549 2.9262 4.6216 24 6 5.4183 1.6158 4.4957 25 7 5.8605 0.5776 4.3990 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9289 -0.8908 34 1 3.9337 0.9287 0.8892 35 1 3.6208 3.1313 -2.0281 36 1 4.1350 4.5842 -1.1375 37 1 5.7140 4.9635 -4.4422 38 1 3.8129 1.8843 2.3358 39 1 3.1194 5.2379 2.8432 40 1 3.3406 6.4541 4.9660 41 1 4.5163 5.4310 6.8684 42 1 5.4858 3.1836 6.6624 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196305382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:00 Heat of formation + Delta-G solvation = 71.745099 kcal Electronic energy + Delta-G solvation = -23778.946747 eV Core-core repulsion = 20464.350655 eV Total energy + Delta-G solvation = -3314.596092 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.37803 -38.67196 -36.53676 -35.83095 -34.67761 -32.65402 -31.40860 -29.97312 -29.57352 -27.20671 -24.88808 -23.97990 -23.63537 -22.12332 -21.45966 -20.68069 -19.21136 -17.91453 -17.56872 -16.58499 -15.87344 -15.52050 -15.30291 -14.93989 -14.71205 -14.50939 -14.11942 -13.98758 -13.80892 -13.39320 -13.17483 -13.01498 -12.90385 -12.60834 -12.46128 -12.05590 -11.83945 -11.58981 -11.50167 -11.32928 -11.27148 -11.22210 -11.00776 -10.73205 -10.69739 -10.39834 -10.22925 -9.95599 -9.22967 -9.01048 -8.49835 -8.11133 -7.07055 -6.37920 -6.11212 -4.15398 0.66918 1.22402 2.00309 2.47850 2.58269 2.95155 3.09580 3.30493 3.35344 3.40074 3.56729 3.75029 3.90492 4.40935 4.71219 4.76444 4.78248 4.92885 4.95577 5.04556 5.19769 5.25281 5.33447 5.40240 5.42199 5.47970 5.63339 5.65381 5.79593 5.82090 5.99259 6.06627 6.11555 6.14711 6.20989 6.32329 6.41561 6.53857 6.86534 6.99084 7.30982 7.37763 7.41991 7.78226 7.82944 8.05754 8.82564 9.48072 10.97245 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.004925 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.282778 B = 5683.817400 C = 7109.632999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.136 4.136 4 C 0.089 3.911 5 N -0.525 5.525 6 C 0.237 3.763 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.071 3.929 10 N -0.889 5.889 11 Si 0.899 3.101 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.549 3.451 16 S -0.617 6.617 17 N -0.659 5.659 18 C 0.205 3.795 19 C -0.074 4.074 20 C -0.083 4.083 21 C -0.126 4.126 22 C -0.069 4.069 23 C -0.053 4.053 24 C 0.257 3.743 25 N -0.421 5.421 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.265 0.735 38 H 0.400 0.600 39 H 0.151 0.849 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.102 -4.806 15.522 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.175 4.175 4 C -0.038 4.038 5 N -0.227 5.227 6 C 0.119 3.881 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.133 4.133 10 N -0.527 5.527 11 Si 0.726 3.274 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.192 3.808 16 S -0.482 6.482 17 N -0.290 5.290 18 C 0.107 3.893 19 C -0.097 4.097 20 C -0.104 4.104 21 C -0.145 4.145 22 C -0.091 4.091 23 C -0.060 4.060 24 C -0.058 4.058 25 N -0.097 5.097 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.240 0.760 39 H 0.168 0.832 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.052 -5.296 14.897 18.218 hybrid contribution 0.670 -1.133 -0.450 1.391 sum -8.382 -6.429 14.446 17.897 Atomic orbital electron populations 1.21747 0.95533 1.01528 1.02001 1.21462 0.96185 0.96067 1.02283 1.22052 0.94524 0.97578 1.03393 1.21916 0.94477 0.83645 1.03751 1.47987 1.55646 1.12452 1.06624 1.20050 0.97492 0.95652 0.74917 1.21060 0.95961 1.32728 1.06461 0.92665 1.24797 0.97769 0.94543 0.96147 1.69896 1.35735 1.32736 1.14362 0.86545 0.84805 0.78105 0.77944 1.20442 1.21057 1.19944 1.22369 0.82839 0.94607 0.80988 1.93172 1.63874 0.98272 1.92925 1.42299 1.70139 1.13431 1.03085 1.17257 0.95656 0.93479 0.82944 1.21353 0.97908 0.92540 0.97865 1.21191 0.97615 0.99840 0.91740 1.21030 0.99166 0.94837 0.99436 1.20852 0.98671 0.94470 0.95083 1.15908 1.03896 0.89468 0.96749 1.25551 0.93726 0.92758 0.93803 1.81101 1.09104 1.12044 1.07420 0.92757 0.92825 0.92474 0.91399 0.92145 0.91945 0.90353 0.87955 0.91943 0.94160 0.90144 0.92497 0.76007 0.83170 0.84932 0.85116 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.12 -1.18 5.93 -26.73 -0.16 -1.34 16 3 C -0.14 -1.63 5.54 -26.73 -0.15 -1.78 16 4 C 0.09 1.29 5.22 -4.04 -0.02 1.27 16 5 N -0.53 -10.07 2.46 -177.09 -0.43 -10.51 16 6 C 0.24 5.69 4.92 -5.19 -0.03 5.66 16 7 C -0.52 -14.14 9.39 -34.44 -0.32 -14.46 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 10 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 11 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.55 10.46 7.45 -86.92 -0.65 9.81 16 16 S -0.62 -14.13 24.68 -107.50 -2.65 -16.78 16 17 N -0.66 -9.88 4.73 -11.21 -0.05 -9.93 16 18 C 0.20 2.82 5.83 -83.46 -0.49 2.33 16 19 C -0.07 -0.96 7.85 -39.44 -0.31 -1.27 16 20 C -0.08 -0.82 10.03 -39.54 -0.40 -1.22 16 21 C -0.13 -1.07 10.02 -39.62 -0.40 -1.47 16 22 C -0.07 -0.66 9.75 -39.18 -0.38 -1.04 16 23 C -0.05 -0.65 5.75 -106.64 -0.61 -1.27 16 24 C 0.26 3.54 14.57 -22.59 -0.33 3.21 16 25 N -0.42 -6.54 18.51 41.71 0.77 -5.77 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.57 8.07 -51.93 -0.42 1.15 16 34 H 0.06 0.81 6.29 -51.93 -0.33 0.48 16 35 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 36 H 0.08 2.18 6.58 -51.93 -0.34 1.84 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.40 5.20 6.16 -40.82 -0.25 4.95 16 39 H 0.15 2.21 6.54 -52.49 -0.34 1.86 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -32.38 371.15 -10.90 -43.28 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.87 Total: 2.74 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.97 Total: -0.66 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 1.02 Total: -50.95 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -14.13 SS G_CDS: -2.65 Total: -16.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.38 -10.90 -43.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196305382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.026 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds