Wall clock time and date at job start Tue Mar 31 2020 12:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47001 * 2 1 4 4 C 1.52998 * 109.47001 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47179 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99716 * 269.99945 * 5 4 3 7 7 C 1.50694 * 109.47047 * 269.99809 * 6 5 4 8 8 H 1.08004 * 120.00393 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99992 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00177 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99977 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46880 * 59.99971 * 11 9 7 13 13 H 1.48496 * 109.47014 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47253 * 300.00221 * 11 9 7 15 15 C 1.34776 * 120.00321 * 89.99207 * 5 4 3 16 16 S 1.71201 * 119.99951 * 180.02562 * 15 5 4 17 17 N 1.34770 * 119.99918 * 0.02562 * 15 5 4 18 18 C 1.39341 * 120.00042 * 185.45510 * 17 15 5 19 19 C 1.38809 * 120.16319 * 44.38734 * 18 17 15 20 20 C 1.38052 * 120.07626 * 179.97438 * 19 18 17 21 21 C 1.38545 * 120.40873 * 0.02562 * 20 19 18 22 22 C 1.37820 * 120.33491 * 0.02562 * 21 20 19 23 23 C 1.39710 * 119.91153 * 359.97438 * 22 21 20 24 24 C 1.43195 * 120.20094 * 180.02562 * 23 22 21 25 25 N 6.19984 * 134.30580 * 82.52018 * 2 1 3 26 26 H 1.08999 * 109.46754 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47595 * 300.00165 * 1 2 3 28 28 H 1.09003 * 109.47287 * 60.00455 * 1 2 3 29 29 H 1.08997 * 109.47595 * 239.99835 * 2 1 3 30 30 H 1.09003 * 109.47287 * 119.99545 * 2 1 3 31 31 H 1.08997 * 109.47081 * 59.99520 * 3 2 1 32 32 H 1.09003 * 109.46729 * 299.99887 * 3 2 1 33 33 H 1.08997 * 109.47595 * 59.99835 * 4 3 2 34 34 H 1.09003 * 109.47287 * 299.99545 * 4 3 2 35 35 H 1.09000 * 109.47056 * 29.99791 * 6 5 4 36 36 H 1.09001 * 109.46923 * 149.99734 * 6 5 4 37 37 H 0.96993 * 120.00188 * 179.97438 * 10 9 7 38 38 H 0.97002 * 120.00105 * 5.45680 * 17 15 5 39 39 H 1.07998 * 119.96553 * 0.25413 * 19 18 17 40 40 H 1.07995 * 119.79838 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.83374 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.04489 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3019 3.5151 -1.2685 7 6 5.7250 3.2785 -1.7042 8 1 6.3824 2.6741 -1.0968 9 6 6.1881 3.8347 -2.8778 10 7 5.3881 4.5720 -3.6168 11 14 7.9524 3.5420 -3.4176 12 1 8.1802 2.0855 -3.5964 13 1 8.1993 4.2426 -4.7034 14 1 8.8799 4.0647 -2.3824 15 6 4.2833 3.4585 1.1674 16 16 4.8533 5.0728 1.1680 17 7 4.0595 2.8224 2.3343 18 6 4.1824 3.5124 3.5386 19 6 3.6409 4.7835 3.6726 20 6 3.7632 5.4653 4.8668 21 6 4.4257 4.8891 5.9386 22 6 4.9707 3.6284 5.8238 23 6 4.8549 2.9262 4.6216 24 6 5.4183 1.6158 4.4957 25 7 5.8605 0.5776 4.3990 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9289 -0.8908 34 1 3.9337 0.9287 0.8892 35 1 3.6208 3.1313 -2.0281 36 1 4.1350 4.5842 -1.1375 37 1 5.7140 4.9635 -4.4422 38 1 3.8129 1.8843 2.3358 39 1 3.1194 5.2379 2.8432 40 1 3.3406 6.4541 4.9660 41 1 4.5163 5.4310 6.8684 42 1 5.4858 3.1836 6.6624 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196305382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:59 Heat of formation + Delta-G solvation = 55.687047 kcal Electronic energy + Delta-G solvation = -23779.643076 eV Core-core repulsion = 20464.350655 eV Total energy + Delta-G solvation = -3315.292421 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55983 -39.91938 -37.65146 -36.95686 -35.91285 -34.57912 -32.33778 -31.06552 -30.81581 -28.91417 -26.10387 -25.39867 -24.83341 -23.36251 -22.43350 -21.93848 -20.34580 -19.17025 -18.83237 -18.60296 -17.19705 -16.67489 -16.39121 -16.33853 -16.06169 -15.77148 -15.34450 -15.16459 -14.88317 -14.52428 -14.27809 -14.17460 -14.09456 -13.86209 -13.66649 -13.50307 -13.20415 -12.94876 -12.71439 -12.61273 -12.48378 -12.37731 -12.25134 -12.20470 -12.16428 -11.88000 -11.77467 -11.57451 -10.64530 -10.59785 -9.94275 -9.33348 -8.81505 -8.22929 -8.09075 -6.33706 -0.33583 0.20629 0.63756 1.00159 1.35143 1.39963 1.45658 1.49204 1.62075 1.93948 2.17494 2.39366 2.76004 2.96012 3.10430 3.59126 3.74522 3.90538 4.00578 4.14426 4.18920 4.28319 4.35578 4.48997 4.52789 4.59157 4.65439 4.73979 4.86942 4.96756 4.97836 5.10127 5.17557 5.20640 5.25696 5.28251 5.39563 5.39660 5.56064 5.60612 5.67721 5.82017 5.96824 6.02060 6.25901 6.32695 6.69490 7.32657 8.84608 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.004925 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.282778 B = 5683.817400 C = 7109.632999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.126 4.126 4 C 0.086 3.914 5 N -0.531 5.531 6 C 0.257 3.743 7 C -0.531 4.531 8 H 0.043 0.957 9 C 0.024 3.976 10 N -0.918 5.918 11 Si 0.955 3.045 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.284 1.284 15 C 0.571 3.429 16 S -0.703 6.703 17 N -0.637 5.637 18 C 0.172 3.828 19 C -0.090 4.090 20 C -0.076 4.076 21 C -0.107 4.107 22 C -0.058 4.058 23 C -0.059 4.059 24 C 0.272 3.728 25 N -0.455 5.455 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.035 0.965 36 H 0.047 0.953 37 H 0.267 0.733 38 H 0.412 0.588 39 H 0.125 0.875 40 H 0.157 0.843 41 H 0.174 0.826 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.204 -5.898 18.181 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.165 4.165 4 C -0.039 4.039 5 N -0.232 5.232 6 C 0.137 3.863 7 C -0.569 4.569 8 H 0.062 0.938 9 C -0.177 4.177 10 N -0.557 5.557 11 Si 0.781 3.219 12 H -0.190 1.190 13 H -0.201 1.201 14 H -0.210 1.210 15 C 0.210 3.790 16 S -0.571 6.571 17 N -0.267 5.267 18 C 0.075 3.925 19 C -0.112 4.112 20 C -0.096 4.096 21 C -0.125 4.125 22 C -0.079 4.079 23 C -0.066 4.066 24 C -0.043 4.043 25 N -0.131 5.131 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.253 0.747 39 H 0.143 0.857 40 H 0.174 0.826 41 H 0.191 0.809 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.183 -6.445 17.628 20.895 hybrid contribution 0.628 -0.787 -1.085 1.480 sum -8.555 -7.232 16.543 19.979 Atomic orbital electron populations 1.21739 0.94606 1.02421 1.01940 1.21448 0.96921 0.94113 1.03022 1.21970 0.92311 0.99373 1.02832 1.22200 0.96265 0.80955 1.04493 1.47765 1.56056 1.14008 1.05366 1.19430 0.96019 0.94165 0.76690 1.21262 0.97077 1.32279 1.06323 0.93826 1.25537 1.01319 0.94416 0.96380 1.69990 1.37330 1.33603 1.14774 0.85653 0.80185 0.78661 0.77411 1.19025 1.20121 1.20962 1.21845 0.81917 0.93203 0.82038 1.93257 1.67597 1.02301 1.93941 1.42140 1.68414 1.13727 1.02419 1.17479 0.98095 0.94321 0.82616 1.21263 0.98656 0.92588 0.98685 1.21549 0.96750 1.00472 0.90866 1.21504 0.96554 0.94199 1.00249 1.21305 0.97547 0.94509 0.94579 1.16029 1.04215 0.89013 0.97344 1.25764 0.92909 0.92748 0.92849 1.81117 1.10401 1.13101 1.08487 0.91378 0.92417 0.93080 0.91367 0.90712 0.91468 0.91998 0.88554 0.89807 0.94669 0.93538 0.92363 0.74693 0.85669 0.82585 0.80887 0.82013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 71.98 0.71 -1.66 16 2 C -0.12 -2.08 5.93 30.60 0.18 -1.90 16 3 C -0.13 -2.96 5.54 30.60 0.17 -2.79 16 4 C 0.09 2.49 5.22 86.38 0.45 2.94 16 5 N -0.53 -20.95 2.46 -714.19 -1.75 -22.71 16 6 C 0.26 12.91 4.92 85.63 0.42 13.33 16 7 C -0.53 -29.50 9.39 25.60 0.24 -29.26 16 8 H 0.04 2.48 7.81 -2.91 -0.02 2.45 16 9 C 0.02 1.34 5.46 84.66 0.46 1.80 16 10 N -0.92 -53.91 13.29 21.45 0.28 -53.62 16 11 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 14 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 15 C 0.57 22.38 7.45 179.06 1.33 23.71 16 16 S -0.70 -33.78 24.68 -56.49 -1.39 -35.18 16 17 N -0.64 -19.06 4.73 -189.37 -0.90 -19.96 16 18 C 0.17 4.61 5.83 38.59 0.23 4.83 16 19 C -0.09 -2.30 7.85 22.36 0.18 -2.13 16 20 C -0.08 -1.32 10.03 22.30 0.22 -1.09 16 21 C -0.11 -1.34 10.02 22.24 0.22 -1.11 16 22 C -0.06 -0.88 9.75 22.53 0.22 -0.66 16 23 C -0.06 -1.34 5.75 -21.17 -0.12 -1.46 16 24 C 0.27 7.05 14.57 88.37 1.29 8.34 16 25 N -0.45 -13.56 18.51 18.96 0.35 -13.21 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 2.95 8.07 -2.39 -0.02 2.93 16 34 H 0.08 2.07 6.29 -2.39 -0.01 2.05 16 35 H 0.04 1.79 8.07 -2.39 -0.02 1.77 16 36 H 0.05 2.68 6.58 -2.39 -0.02 2.66 16 37 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.41 10.36 6.16 -92.71 -0.57 9.79 16 39 H 0.13 3.87 6.54 -2.91 -0.02 3.85 16 40 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 41 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -74.03 371.15 5.29 -68.74 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.46 Total: 15.76 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.21 Total: 12.89 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -2.01 Total: -109.49 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: -33.78 SS G_CDS: -1.39 Total: -35.18 kcal Total: -74.03 5.29 -68.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196305382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.430 kcal (2) G-P(sol) polarization free energy of solvation -74.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds