Wall clock time and date at job start Tue Mar 31 2020 12:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47520 * 2 1 4 4 C 1.52992 * 109.47530 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47485 * 179.97438 * 4 3 2 6 6 C 1.36951 * 119.99967 * 89.99934 * 5 4 3 7 7 H 1.08002 * 120.00057 * 218.49530 * 6 5 4 8 8 C 1.38977 * 119.99972 * 38.49497 * 6 5 4 9 9 N 1.31419 * 119.99803 * 17.60391 * 8 6 5 10 10 Si 1.86803 * 120.00236 * 197.59915 * 8 6 5 11 11 H 1.48501 * 109.46631 * 59.99943 * 10 8 6 12 12 H 1.48499 * 109.46943 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46951 * 300.00226 * 10 8 6 14 14 C 1.34778 * 120.00051 * 270.00737 * 5 4 3 15 15 O 1.21675 * 120.00237 * 5.34062 * 14 5 4 16 16 C 1.46994 * 119.99925 * 185.34930 * 14 5 4 17 17 C 1.36105 * 127.14095 * 264.59326 * 16 14 5 18 18 C 1.50703 * 125.08145 * 0.02562 * 17 16 14 19 19 O 1.33863 * 109.83576 * 179.97438 * 17 16 14 20 20 C 1.34917 * 111.35193 * 0.02562 * 19 17 16 21 21 C 1.38920 * 133.04245 * 180.02562 * 20 19 17 22 22 C 1.38308 * 119.93570 * 179.97438 * 21 20 19 23 23 O 1.35925 * 119.73824 * 179.97438 * 22 21 20 24 24 C 1.39155 * 120.53030 * 0.02737 * 22 21 20 25 25 C 1.37769 * 120.14725 * 359.97100 * 24 22 21 26 26 C 1.39142 * 119.70111 * 359.69531 * 25 24 22 27 27 H 1.09008 * 109.46878 * 60.00397 * 1 2 3 28 28 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47298 * 300.00564 * 1 2 3 30 30 H 1.09005 * 109.47334 * 239.99683 * 2 1 3 31 31 H 1.09002 * 109.47197 * 119.99875 * 2 1 3 32 32 H 1.09001 * 109.46598 * 59.99475 * 3 2 1 33 33 H 1.09002 * 109.46783 * 300.00128 * 3 2 1 34 34 H 1.09005 * 109.47027 * 59.99865 * 4 3 2 35 35 H 1.09004 * 109.47250 * 300.00541 * 4 3 2 36 36 H 0.96998 * 119.99938 * 174.89668 * 9 8 6 37 37 H 1.08997 * 109.47213 * 89.99759 * 18 17 16 38 38 H 1.09000 * 109.46953 * 210.00044 * 18 17 16 39 39 H 1.08997 * 109.47392 * 329.99925 * 18 17 16 40 40 H 1.08004 * 120.02823 * 359.95344 * 21 20 19 41 41 H 0.96702 * 113.99808 * 89.99773 * 23 22 21 42 42 H 1.07997 * 119.92687 * 179.97438 * 24 22 21 43 43 H 1.07998 * 120.15128 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2862 3.4699 1.1858 7 1 4.0386 4.5163 1.2867 8 6 4.8359 2.7792 2.2592 9 7 5.4510 1.6353 2.0588 10 14 4.7004 3.4768 3.9868 11 1 3.2681 3.6238 4.3503 12 1 5.3631 2.5566 4.9455 13 1 5.3628 4.8049 4.0376 14 6 4.2834 3.4583 -1.1675 15 8 3.9898 2.9206 -2.2187 16 6 4.8838 4.8001 -1.1708 17 6 4.2301 5.9927 -1.2249 18 6 2.7337 6.1580 -1.2925 19 8 5.1152 6.9968 -1.2080 20 6 6.3811 6.5349 -1.1435 21 6 7.6191 7.1639 -1.1030 22 6 8.7755 6.4080 -1.0365 23 8 9.9847 7.0276 -0.9976 24 6 8.7110 5.0182 -1.0104 25 6 7.4900 4.3813 -1.0500 26 6 6.3214 5.1341 -1.1099 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 5.8986 1.1899 2.7951 37 1 2.3291 6.2203 -0.2824 38 1 2.4933 7.0709 -1.8373 39 1 2.2965 5.3022 -1.8068 40 1 7.6784 8.2421 -1.1236 41 1 10.2963 7.2260 -0.1039 42 1 9.6202 4.4376 -0.9589 43 1 7.4399 3.3027 -1.0293 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198625017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:32 Heat of formation + Delta-G solvation = -59.042038 kcal Electronic energy + Delta-G solvation = -27091.937245 eV Core-core repulsion = 23296.624176 eV Total energy + Delta-G solvation = -3795.313070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.06151 -38.80087 -38.46547 -35.82327 -35.36476 -33.96885 -32.64602 -31.50989 -30.27251 -30.07087 -28.48846 -26.33272 -24.98183 -23.59562 -22.82360 -21.63511 -21.14418 -20.35572 -19.14689 -18.22349 -17.11507 -16.53431 -16.26898 -15.91963 -15.48930 -15.07374 -14.77315 -14.58626 -14.30289 -14.00203 -13.78613 -13.61148 -13.18561 -12.96497 -12.76648 -12.57492 -12.37476 -12.23108 -12.02844 -11.72018 -11.51616 -11.44582 -11.25344 -11.20048 -10.94794 -10.62360 -10.54528 -10.40022 -10.34792 -10.28541 -9.77362 -9.40792 -9.17990 -8.67948 -8.27323 -7.58102 -7.48456 -6.43195 -4.14727 1.17456 1.61317 2.62794 2.95026 3.06730 3.14888 3.16781 3.65867 3.90443 4.04559 4.40625 4.68500 4.83356 4.89687 5.13081 5.33317 5.42936 5.47011 5.47825 5.62107 5.64369 5.68803 5.76918 5.83280 6.01877 6.06058 6.17049 6.18569 6.23136 6.35522 6.40255 6.45903 6.52838 6.58121 6.69018 6.70570 6.79951 6.81345 6.90043 7.09318 7.31345 7.46045 7.50152 7.73567 7.85742 8.32061 8.99853 9.40622 9.83951 10.57959 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.004924 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.528074 B = 5685.039798 C = 6537.187692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.111 3.889 5 N -0.420 5.420 6 C -0.333 4.333 7 H 0.086 0.914 8 C 0.049 3.951 9 N -0.860 5.860 10 Si 0.912 3.088 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.531 3.469 15 O -0.597 6.597 16 C -0.145 4.145 17 C 0.039 3.961 18 C -0.072 4.072 19 O -0.191 6.191 20 C 0.063 3.937 21 C -0.140 4.140 22 C 0.120 3.880 23 O -0.496 6.496 24 C -0.162 4.162 25 C -0.035 4.035 26 C -0.091 4.091 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.111 0.889 36 H 0.272 0.728 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.132 0.868 41 H 0.388 0.612 42 H 0.132 0.868 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 5.450 -0.416 5.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.165 4.165 4 C -0.012 4.012 5 N -0.136 5.136 6 C -0.461 4.461 7 H 0.103 0.897 8 C -0.157 4.157 9 N -0.497 5.497 10 Si 0.738 3.262 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.198 1.198 14 C 0.319 3.681 15 O -0.484 6.484 16 C -0.150 4.150 17 C -0.009 4.009 18 C -0.129 4.129 19 O -0.093 6.093 20 C 0.016 3.984 21 C -0.159 4.159 22 C 0.075 3.925 23 O -0.306 6.306 24 C -0.181 4.181 25 C -0.053 4.053 26 C -0.093 4.093 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.150 0.850 41 H 0.244 0.756 42 H 0.150 0.850 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.258 5.196 -1.385 5.383 hybrid contribution 0.231 0.331 1.621 1.670 sum -0.027 5.527 0.236 5.532 Atomic orbital electron populations 1.21756 0.96639 1.00682 1.01465 1.21429 0.94976 0.97736 1.01612 1.21886 0.97740 0.95534 1.01369 1.21538 0.91388 0.84513 1.03742 1.43386 1.54130 1.11958 1.04136 1.19287 1.42667 0.96203 0.87918 0.89677 1.25367 0.94334 0.95865 1.00123 1.69775 1.30279 1.16620 1.33010 0.86224 0.78910 0.78991 0.82029 1.19619 1.20736 1.19771 1.17318 0.81699 0.84780 0.84280 1.90662 1.57531 1.68203 1.31974 1.20726 0.91472 0.94704 1.08062 1.22394 0.91901 0.84149 1.02449 1.20385 0.84671 1.03982 1.03838 1.83700 1.13546 1.35458 1.76599 1.19121 0.84176 0.91907 1.03220 1.19842 0.87377 1.00173 1.08468 1.17807 0.83727 0.89854 1.01091 1.84819 1.32763 1.79823 1.33155 1.21180 0.98111 0.93456 1.05328 1.20439 0.89658 1.00425 0.94750 1.19559 0.93100 0.92510 1.04112 0.93088 0.93434 0.93039 0.92417 0.92227 0.92205 0.92931 0.92890 0.87183 0.91787 0.89528 0.90545 0.88918 0.84966 0.75606 0.85001 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.13 -2.50 5.54 -26.73 -0.15 -2.64 16 4 C 0.11 2.58 4.95 -4.05 -0.02 2.56 16 5 N -0.42 -10.33 2.51 -116.18 -0.29 -10.62 16 6 C -0.33 -8.25 8.57 -14.99 -0.13 -8.38 16 7 H 0.09 2.10 7.50 -52.49 -0.39 1.71 16 8 C 0.05 1.21 5.05 -17.45 -0.09 1.12 16 9 N -0.86 -21.75 11.28 55.50 0.63 -21.13 16 10 Si 0.91 19.17 29.59 -169.99 -5.03 14.14 16 11 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 14 C 0.53 13.17 7.01 -12.71 -0.09 13.08 16 15 O -0.60 -16.04 16.74 5.21 0.09 -15.96 16 16 C -0.15 -3.27 4.57 -103.24 -0.47 -3.75 16 17 C 0.04 0.77 7.30 -35.07 -0.26 0.51 16 18 C -0.07 -1.11 10.20 36.01 0.37 -0.75 16 19 O -0.19 -3.63 10.53 5.16 0.05 -3.57 16 20 C 0.06 1.20 7.38 -38.58 -0.28 0.92 16 21 C -0.14 -2.25 9.99 -39.30 -0.39 -2.64 16 22 C 0.12 1.83 6.69 -39.22 -0.26 1.57 16 23 O -0.50 -6.22 13.49 -19.50 -0.26 -6.48 16 24 C -0.16 -2.65 9.97 -39.41 -0.39 -3.04 16 25 C -0.03 -0.68 10.08 -39.42 -0.40 -1.07 16 26 C -0.09 -1.94 6.39 -104.94 -0.67 -2.61 16 27 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 35 H 0.11 2.69 5.43 -51.93 -0.28 2.41 16 36 H 0.27 6.53 8.32 -40.82 -0.34 6.19 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 1.49 7.86 -51.93 -0.41 1.09 16 40 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.39 2.92 9.06 45.56 0.41 3.34 16 42 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 43 H 0.13 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -30.30 368.14 -7.56 -37.86 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.27 Total: 9.10 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -3.03 Total: -8.89 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.33 Total: -31.75 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.12 Total: -26.01 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.30 -7.56 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198625017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.178 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds