Wall clock time and date at job start Tue Mar 31 2020 12:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47520 * 2 1 4 4 C 1.52992 * 109.47530 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47485 * 179.97438 * 4 3 2 6 6 C 1.36951 * 119.99967 * 89.99934 * 5 4 3 7 7 H 1.08002 * 120.00057 * 218.49530 * 6 5 4 8 8 C 1.38977 * 119.99972 * 38.49497 * 6 5 4 9 9 N 1.31419 * 119.99803 * 17.60391 * 8 6 5 10 10 Si 1.86803 * 120.00236 * 197.59915 * 8 6 5 11 11 H 1.48501 * 109.46631 * 59.99943 * 10 8 6 12 12 H 1.48499 * 109.46943 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46951 * 300.00226 * 10 8 6 14 14 C 1.34778 * 120.00051 * 270.00737 * 5 4 3 15 15 O 1.21675 * 120.00237 * 5.34062 * 14 5 4 16 16 C 1.46994 * 119.99925 * 185.34930 * 14 5 4 17 17 C 1.36105 * 127.14095 * 264.59326 * 16 14 5 18 18 C 1.50703 * 125.08145 * 0.02562 * 17 16 14 19 19 O 1.33863 * 109.83576 * 179.97438 * 17 16 14 20 20 C 1.34917 * 111.35193 * 0.02562 * 19 17 16 21 21 C 1.38920 * 133.04245 * 180.02562 * 20 19 17 22 22 C 1.38308 * 119.93570 * 179.97438 * 21 20 19 23 23 O 1.35925 * 119.73824 * 179.97438 * 22 21 20 24 24 C 1.39155 * 120.53030 * 0.02737 * 22 21 20 25 25 C 1.37769 * 120.14725 * 359.97100 * 24 22 21 26 26 C 1.39142 * 119.70111 * 359.69531 * 25 24 22 27 27 H 1.09008 * 109.46878 * 60.00397 * 1 2 3 28 28 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47298 * 300.00564 * 1 2 3 30 30 H 1.09005 * 109.47334 * 239.99683 * 2 1 3 31 31 H 1.09002 * 109.47197 * 119.99875 * 2 1 3 32 32 H 1.09001 * 109.46598 * 59.99475 * 3 2 1 33 33 H 1.09002 * 109.46783 * 300.00128 * 3 2 1 34 34 H 1.09005 * 109.47027 * 59.99865 * 4 3 2 35 35 H 1.09004 * 109.47250 * 300.00541 * 4 3 2 36 36 H 0.96998 * 119.99938 * 174.89668 * 9 8 6 37 37 H 1.08997 * 109.47213 * 89.99759 * 18 17 16 38 38 H 1.09000 * 109.46953 * 210.00044 * 18 17 16 39 39 H 1.08997 * 109.47392 * 329.99925 * 18 17 16 40 40 H 1.08004 * 120.02823 * 359.95344 * 21 20 19 41 41 H 0.96702 * 113.99808 * 89.99773 * 23 22 21 42 42 H 1.07997 * 119.92687 * 179.97438 * 24 22 21 43 43 H 1.07998 * 120.15128 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2862 3.4699 1.1858 7 1 4.0386 4.5163 1.2867 8 6 4.8359 2.7792 2.2592 9 7 5.4510 1.6353 2.0588 10 14 4.7004 3.4768 3.9868 11 1 3.2681 3.6238 4.3503 12 1 5.3631 2.5566 4.9455 13 1 5.3628 4.8049 4.0376 14 6 4.2834 3.4583 -1.1675 15 8 3.9898 2.9206 -2.2187 16 6 4.8838 4.8001 -1.1708 17 6 4.2301 5.9927 -1.2249 18 6 2.7337 6.1580 -1.2925 19 8 5.1152 6.9968 -1.2080 20 6 6.3811 6.5349 -1.1435 21 6 7.6191 7.1639 -1.1030 22 6 8.7755 6.4080 -1.0365 23 8 9.9847 7.0276 -0.9976 24 6 8.7110 5.0182 -1.0104 25 6 7.4900 4.3813 -1.0500 26 6 6.3214 5.1341 -1.1099 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 5.8986 1.1899 2.7951 37 1 2.3291 6.2203 -0.2824 38 1 2.4933 7.0709 -1.8373 39 1 2.2965 5.3022 -1.8068 40 1 7.6784 8.2421 -1.1236 41 1 10.2963 7.2260 -0.1039 42 1 9.6202 4.4376 -0.9589 43 1 7.4399 3.3027 -1.0293 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198625017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:31 Heat of formation + Delta-G solvation = -76.932536 kcal Electronic energy + Delta-G solvation = -27092.713036 eV Core-core repulsion = 23296.624176 eV Total energy + Delta-G solvation = -3796.088860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.52935 -40.37878 -39.99558 -37.19120 -37.05011 -35.58027 -34.15300 -33.37689 -31.66213 -31.39219 -30.04565 -27.74355 -26.86126 -25.16876 -24.22111 -23.12034 -22.53946 -21.90916 -20.91305 -19.70283 -18.54536 -18.03606 -17.86366 -17.42803 -17.13087 -16.56815 -16.38817 -16.15750 -15.85875 -15.56092 -15.26258 -15.06991 -14.57294 -14.53343 -14.12342 -13.97677 -13.78129 -13.71893 -13.62367 -13.13717 -12.99601 -12.96934 -12.85850 -12.81357 -12.46292 -12.20236 -12.07437 -11.97741 -11.83456 -11.61215 -11.42726 -11.06351 -10.89537 -10.57052 -9.67589 -9.48175 -8.96785 -8.32088 -6.10348 -0.20759 0.22455 1.11017 1.37825 1.43333 1.51436 1.52939 1.81915 2.27220 2.52472 2.94392 2.99951 3.23376 3.45027 3.72171 4.03155 4.04108 4.09389 4.17685 4.24827 4.25858 4.32048 4.41146 4.52652 4.57723 4.66299 4.76935 4.85134 4.86565 4.88390 4.99756 5.06867 5.09471 5.18746 5.21777 5.26916 5.33848 5.38312 5.43202 5.45069 5.51324 5.58080 5.95654 6.04455 6.39517 6.81361 7.07053 7.48913 7.93201 8.69608 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.004924 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.528074 B = 5685.039798 C = 6537.187692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.113 4.113 4 C 0.112 3.888 5 N -0.425 5.425 6 C -0.344 4.344 7 H 0.084 0.916 8 C 0.013 3.987 9 N -0.887 5.887 10 Si 0.975 3.025 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.271 1.271 14 C 0.526 3.474 15 O -0.633 6.633 16 C -0.198 4.198 17 C 0.055 3.945 18 C -0.071 4.071 19 O -0.185 6.185 20 C 0.050 3.950 21 C -0.130 4.130 22 C 0.137 3.863 23 O -0.491 6.491 24 C -0.149 4.149 25 C -0.066 4.066 26 C -0.123 4.123 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.098 0.902 36 H 0.274 0.726 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.165 0.835 41 H 0.416 0.584 42 H 0.157 0.843 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 7.578 0.855 7.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.152 4.152 4 C -0.011 4.011 5 N -0.141 5.141 6 C -0.471 4.471 7 H 0.101 0.899 8 C -0.191 4.191 9 N -0.524 5.524 10 Si 0.799 3.201 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.196 1.196 14 C 0.316 3.684 15 O -0.523 6.523 16 C -0.203 4.203 17 C 0.006 3.994 18 C -0.127 4.127 19 O -0.086 6.086 20 C 0.003 3.997 21 C -0.149 4.149 22 C 0.092 3.908 23 O -0.304 6.304 24 C -0.168 4.168 25 C -0.084 4.084 26 C -0.124 4.124 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.183 0.817 41 H 0.276 0.724 42 H 0.174 0.826 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.014 7.332 -0.088 7.333 hybrid contribution 0.322 -0.299 1.193 1.272 sum 0.337 7.033 1.105 7.127 Atomic orbital electron populations 1.21706 0.94045 1.02342 1.01839 1.21411 0.97196 0.95106 1.01683 1.21748 0.94989 0.97884 1.00543 1.21527 0.93756 0.83957 1.01848 1.43593 1.53908 1.12220 1.04349 1.19419 1.43265 0.96334 0.88115 0.89864 1.26124 0.93572 0.96069 1.03336 1.69883 1.30786 1.17678 1.34080 0.85263 0.79217 0.78223 0.77435 1.18666 1.20324 1.19558 1.17686 0.81174 0.85843 0.83743 1.90600 1.59110 1.69527 1.33016 1.20705 0.92956 0.94409 1.12191 1.22978 0.93408 0.83415 0.99605 1.20551 0.81846 1.05206 1.05129 1.83704 1.13605 1.34888 1.76439 1.19447 0.85006 0.91114 1.04143 1.20224 0.86149 1.01825 1.06707 1.17734 0.84635 0.89270 0.99141 1.84772 1.30996 1.79156 1.35514 1.21431 0.97556 0.94506 1.03261 1.20380 0.90976 0.99380 0.97690 1.19787 0.92846 0.94097 1.05693 0.92893 0.91137 0.92511 0.92538 0.92015 0.92454 0.94056 0.95126 0.88414 0.91574 0.88047 0.86884 0.90187 0.81732 0.72427 0.82572 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.12 -3.80 5.93 30.59 0.18 -3.62 16 3 C -0.11 -4.61 5.54 30.59 0.17 -4.44 16 4 C 0.11 5.49 4.95 86.38 0.43 5.92 16 5 N -0.43 -22.04 2.51 -639.72 -1.61 -23.65 16 6 C -0.34 -17.56 8.57 84.07 0.72 -16.84 16 7 H 0.08 4.21 7.50 -2.91 -0.02 4.19 16 8 C 0.01 0.63 5.05 84.93 0.43 1.06 16 9 N -0.89 -46.13 11.28 21.67 0.24 -45.88 16 10 Si 0.98 39.08 29.59 68.60 2.03 41.11 16 11 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 12 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 13 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 14 C 0.53 27.70 7.01 86.54 0.61 28.31 16 15 O -0.63 -36.36 16.74 -4.27 -0.07 -36.43 16 16 C -0.20 -9.33 4.57 -18.97 -0.09 -9.42 16 17 C 0.05 2.16 7.30 25.19 0.18 2.35 16 18 C -0.07 -2.14 10.20 71.24 0.73 -1.41 16 19 O -0.18 -6.85 10.53 -4.44 -0.05 -6.90 16 20 C 0.05 1.87 7.38 22.92 0.17 2.04 16 21 C -0.13 -3.85 9.99 22.45 0.22 -3.63 16 22 C 0.14 3.82 6.69 22.51 0.15 3.97 16 23 O -0.49 -10.20 13.49 -92.70 -1.25 -11.45 16 24 C -0.15 -4.71 9.97 22.38 0.22 -4.49 16 25 C -0.07 -2.69 10.08 22.38 0.23 -2.46 16 26 C -0.12 -5.38 6.39 -20.07 -0.13 -5.51 16 27 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.03 1.58 7.50 -2.38 -0.02 1.57 16 35 H 0.10 5.02 5.43 -2.38 -0.01 5.01 16 36 H 0.27 13.43 8.32 -92.71 -0.77 12.66 16 37 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.08 2.63 7.86 -2.39 -0.02 2.61 16 40 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.42 4.25 9.06 -74.06 -0.67 3.58 16 42 H 0.16 4.05 8.06 -2.91 -0.02 4.02 16 43 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -69.02 368.14 4.60 -64.43 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.36 Total: 29.93 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 4.94 Total: -11.15 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -1.36 Total: -69.53 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -1.37 Total: -54.78 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -69.02 4.60 -64.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198625017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.506 kcal (2) G-P(sol) polarization free energy of solvation -69.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds