Wall clock time and date at job start Tue Mar 31 2020 11:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47151 * 2 1 4 4 C 1.38130 * 120.04099 * 265.23179 * 3 2 1 5 5 C 1.38255 * 120.07413 * 180.26897 * 4 3 2 6 6 C 1.38317 * 120.14292 * 359.75508 * 5 4 3 7 7 C 1.38089 * 120.06803 * 359.97438 * 6 5 4 8 8 C 1.38867 * 120.03453 * 85.00131 * 3 2 1 9 9 N 1.39891 * 120.06745 * 0.02562 * 8 3 2 10 10 C 1.34781 * 120.00155 * 135.30706 * 9 8 3 11 11 S 1.71204 * 119.99448 * 354.49094 * 10 9 8 12 12 N 1.34767 * 120.00472 * 174.21489 * 10 9 8 13 13 C 1.46496 * 120.00221 * 180.27270 * 12 10 9 14 14 C 1.50703 * 109.47297 * 90.00228 * 13 12 10 15 15 H 1.08003 * 119.99559 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00289 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00048 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99879 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47116 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47117 * 120.00113 * 18 16 14 21 21 H 1.48501 * 109.46611 * 239.99817 * 18 16 14 22 22 C 1.46504 * 120.00035 * 0.27625 * 12 10 9 23 23 C 1.53006 * 109.47146 * 89.99705 * 22 12 10 24 24 C 1.47194 * 109.47110 * 180.02562 * 23 22 12 25 25 N 5.91869 * 63.15488 * 115.42376 * 2 1 3 26 26 H 1.09007 * 109.46794 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47283 * 299.99484 * 1 2 3 28 28 H 1.09000 * 109.47057 * 59.99673 * 1 2 3 29 29 H 1.09002 * 109.47549 * 240.00196 * 2 1 3 30 30 H 1.09000 * 109.47057 * 120.00327 * 2 1 3 31 31 H 1.07997 * 119.96113 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.93368 * 179.76756 * 5 4 3 33 33 H 1.07998 * 119.96460 * 180.02562 * 6 5 4 34 34 H 1.08000 * 120.02921 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00241 * 315.30035 * 9 8 3 36 36 H 1.09004 * 109.47289 * 210.00441 * 13 12 10 37 37 H 1.09004 * 109.47439 * 330.00329 * 13 12 10 38 38 H 0.96998 * 120.00428 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.47307 * 210.00080 * 22 12 10 40 40 H 1.09005 * 109.46941 * 330.00086 * 22 12 10 41 41 H 1.09002 * 109.46865 * 299.99804 * 23 22 12 42 42 H 1.08998 * 109.47097 * 60.00033 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3565 2.0396 -1.1916 5 6 2.8227 3.3412 -1.1919 6 6 2.9613 4.0297 -0.0003 7 6 2.6336 3.4186 1.1939 8 6 2.1652 2.1110 1.1976 9 7 1.8337 1.4887 2.4058 10 6 2.6507 1.6068 3.4712 11 16 4.1603 2.3978 3.3086 12 7 2.2770 1.1071 4.6658 13 6 3.1625 1.2408 5.8251 14 6 2.8521 2.5257 6.5489 15 1 2.0727 3.1773 6.1821 16 6 3.5629 2.8694 7.6792 17 7 4.5115 2.0757 8.1261 18 14 3.1775 4.4618 8.5766 19 1 2.0756 5.1700 7.8771 20 1 2.7648 4.1571 9.9702 21 1 4.3863 5.3242 8.5957 22 6 0.9852 0.4302 4.8049 23 6 1.1591 -1.0634 4.5222 24 6 -0.1389 -1.7434 4.6615 25 7 -1.1428 -2.2671 4.7694 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2494 1.5048 -2.1237 32 1 3.0791 3.8216 -2.1246 33 1 3.3253 5.0464 -0.0040 34 1 2.7416 3.9569 2.1239 35 1 1.0157 0.9721 2.4769 36 1 3.0087 0.3979 6.4990 37 1 4.1999 1.2539 5.4905 38 1 5.0114 2.3173 8.9215 39 1 0.6109 0.5668 5.8194 40 1 0.2746 0.8540 4.0952 41 1 1.5334 -1.2000 3.5076 42 1 1.8696 -1.4872 5.2318 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201147939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:05 Heat of formation + Delta-G solvation = 72.593915 kcal Electronic energy + Delta-G solvation = -24027.261487 eV Core-core repulsion = 20712.702203 eV Total energy + Delta-G solvation = -3314.559284 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.32471 -38.67429 -36.79486 -35.32013 -34.18691 -32.96210 -31.71230 -29.88843 -29.18599 -27.24660 -25.52201 -23.99822 -23.72094 -22.09347 -21.25788 -20.49015 -18.26941 -17.92414 -17.46144 -16.58235 -15.90677 -15.63620 -15.42272 -15.07729 -14.70908 -14.31526 -14.13328 -13.92348 -13.78714 -13.56799 -13.35908 -13.00345 -12.75515 -12.64459 -12.28743 -12.20185 -12.01924 -11.76360 -11.59075 -11.47347 -11.25695 -11.03955 -11.02452 -10.80686 -10.76214 -10.39499 -10.21381 -9.97436 -9.07892 -8.65556 -8.51891 -8.02041 -7.01524 -6.34584 -6.13747 -4.17702 1.24306 1.57762 2.06608 2.41106 2.57283 2.60341 3.17605 3.26943 3.36225 3.37807 3.43520 3.92182 3.97456 4.38584 4.58096 4.66157 4.69730 4.76869 5.03408 5.08036 5.14063 5.23114 5.25131 5.32002 5.42271 5.48552 5.55805 5.65371 5.67707 5.77439 5.84272 5.99074 6.12501 6.27490 6.44577 6.60759 6.65171 6.77121 7.03720 7.11954 7.33260 7.35082 7.42448 7.76542 7.80839 8.03541 8.80964 9.46161 10.94854 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.005059 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.136030 B = 5533.679983 C = 7559.986204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.095 4.095 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.066 4.066 8 C 0.149 3.851 9 N -0.652 5.652 10 C 0.551 3.449 11 S -0.614 6.614 12 N -0.535 5.535 13 C 0.235 3.765 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.070 3.930 17 N -0.888 5.888 18 Si 0.899 3.101 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.281 1.281 22 C 0.096 3.904 23 C -0.048 4.048 24 C 0.212 3.788 25 N -0.432 5.432 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.142 0.858 35 H 0.396 0.604 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.264 0.736 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.782 -4.018 -15.650 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.098 4.098 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.139 4.139 7 C -0.088 4.088 8 C 0.055 3.945 9 N -0.282 5.282 10 C 0.196 3.804 11 S -0.480 6.480 12 N -0.239 5.239 13 C 0.118 3.882 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.133 4.133 17 N -0.527 5.527 18 Si 0.726 3.274 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.207 1.207 22 C -0.033 4.033 23 C -0.090 4.090 24 C -0.106 4.106 25 N -0.109 5.109 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.159 0.841 35 H 0.236 0.764 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.131 0.869 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.135 -4.353 -15.226 17.804 hybrid contribution -0.834 0.393 0.744 1.185 sum -8.969 -3.960 -14.482 17.489 Atomic orbital electron populations 1.21780 0.94976 1.01713 1.02061 1.20479 0.95698 0.92991 1.03065 1.19620 1.02435 0.95510 0.92234 1.20673 1.01294 0.95333 0.96484 1.21076 1.00032 0.94836 0.97974 1.20941 1.01042 1.00139 0.91746 1.21375 0.95190 0.92827 0.99443 1.17154 1.02619 0.91674 0.83046 1.42414 1.23674 1.53048 1.09107 1.22441 0.91907 0.84817 0.81278 1.93246 1.08465 1.55473 1.90828 1.47862 1.17980 1.49608 1.08483 1.20081 0.91344 0.97970 0.78850 1.21131 1.19712 1.05441 1.09790 0.92405 1.24803 0.94576 0.96977 0.96988 1.69909 1.21966 1.36998 1.23797 0.86432 0.78429 0.83419 0.79074 1.19878 1.21116 1.20701 1.21671 0.86673 0.89272 1.05642 1.19790 0.88275 0.95016 1.05945 1.28931 0.94556 0.93865 0.93269 1.81301 1.11614 1.09149 1.08802 0.92284 0.93258 0.92131 0.90631 0.91363 0.86253 0.86403 0.85943 0.84063 0.76414 0.94089 0.90032 0.92598 0.86886 0.90718 0.87582 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.86 37.16 0.37 -0.79 16 2 C -0.08 -0.78 5.54 -27.88 -0.15 -0.93 16 3 C -0.09 -1.11 5.15 -104.43 -0.54 -1.65 16 4 C -0.12 -1.28 9.68 -39.61 -0.38 -1.67 16 5 C -0.12 -1.34 10.04 -39.55 -0.40 -1.74 16 6 C -0.12 -1.53 10.04 -39.61 -0.40 -1.93 16 7 C -0.07 -1.01 7.88 -39.39 -0.31 -1.32 16 8 C 0.15 2.09 5.81 -83.70 -0.49 1.60 16 9 N -0.65 -8.88 4.37 -11.40 -0.05 -8.93 16 10 C 0.55 9.67 7.46 -86.92 -0.65 9.02 16 11 S -0.61 -13.78 24.68 -107.50 -2.65 -16.43 16 12 N -0.54 -9.03 2.46 -177.08 -0.43 -9.46 16 13 C 0.24 5.20 4.92 -5.19 -0.03 5.17 16 14 C -0.52 -13.19 9.39 -34.44 -0.32 -13.51 16 15 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 16 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 17 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.10 1.14 5.09 -4.04 -0.02 1.12 16 23 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 24 C 0.21 2.27 15.44 -20.72 -0.32 1.95 16 25 N -0.43 -5.77 18.55 42.21 0.78 -4.98 16 26 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.05 0.39 7.23 -51.93 -0.38 0.02 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.61 8.05 -51.93 -0.42 0.20 16 30 H 0.07 0.65 7.59 -51.93 -0.39 0.26 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.14 2.51 6.54 -52.49 -0.34 2.17 16 35 H 0.40 4.23 5.28 -40.82 -0.22 4.02 16 36 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.08 2.09 6.58 -51.93 -0.34 1.75 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.11 1.41 8.07 -51.93 -0.42 0.99 16 40 H 0.07 0.74 6.44 -51.93 -0.33 0.40 16 41 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -32.02 368.68 -10.76 -42.79 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.77 Total: 2.96 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -3.91 Total: -3.55 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 1.03 Total: -47.21 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -13.78 SS G_CDS: -2.65 Total: -16.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.02 -10.76 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201147939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.381 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds