Wall clock time and date at job start Tue Mar 31 2020 11:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47151 * 2 1 4 4 C 1.38130 * 120.04099 * 265.23179 * 3 2 1 5 5 C 1.38255 * 120.07413 * 180.26897 * 4 3 2 6 6 C 1.38317 * 120.14292 * 359.75508 * 5 4 3 7 7 C 1.38089 * 120.06803 * 359.97438 * 6 5 4 8 8 C 1.38867 * 120.03453 * 85.00131 * 3 2 1 9 9 N 1.39891 * 120.06745 * 0.02562 * 8 3 2 10 10 C 1.34781 * 120.00155 * 135.30706 * 9 8 3 11 11 S 1.71204 * 119.99448 * 354.49094 * 10 9 8 12 12 N 1.34767 * 120.00472 * 174.21489 * 10 9 8 13 13 C 1.46496 * 120.00221 * 180.27270 * 12 10 9 14 14 C 1.50703 * 109.47297 * 90.00228 * 13 12 10 15 15 H 1.08003 * 119.99559 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00289 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00048 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99879 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47116 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47117 * 120.00113 * 18 16 14 21 21 H 1.48501 * 109.46611 * 239.99817 * 18 16 14 22 22 C 1.46504 * 120.00035 * 0.27625 * 12 10 9 23 23 C 1.53006 * 109.47146 * 89.99705 * 22 12 10 24 24 C 1.47194 * 109.47110 * 180.02562 * 23 22 12 25 25 N 5.91869 * 63.15488 * 115.42376 * 2 1 3 26 26 H 1.09007 * 109.46794 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47283 * 299.99484 * 1 2 3 28 28 H 1.09000 * 109.47057 * 59.99673 * 1 2 3 29 29 H 1.09002 * 109.47549 * 240.00196 * 2 1 3 30 30 H 1.09000 * 109.47057 * 120.00327 * 2 1 3 31 31 H 1.07997 * 119.96113 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.93368 * 179.76756 * 5 4 3 33 33 H 1.07998 * 119.96460 * 180.02562 * 6 5 4 34 34 H 1.08000 * 120.02921 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00241 * 315.30035 * 9 8 3 36 36 H 1.09004 * 109.47289 * 210.00441 * 13 12 10 37 37 H 1.09004 * 109.47439 * 330.00329 * 13 12 10 38 38 H 0.96998 * 120.00428 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.47307 * 210.00080 * 22 12 10 40 40 H 1.09005 * 109.46941 * 330.00086 * 22 12 10 41 41 H 1.09002 * 109.46865 * 299.99804 * 23 22 12 42 42 H 1.08998 * 109.47097 * 60.00033 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3565 2.0396 -1.1916 5 6 2.8227 3.3412 -1.1919 6 6 2.9613 4.0297 -0.0003 7 6 2.6336 3.4186 1.1939 8 6 2.1652 2.1110 1.1976 9 7 1.8337 1.4887 2.4058 10 6 2.6507 1.6068 3.4712 11 16 4.1603 2.3978 3.3086 12 7 2.2770 1.1071 4.6658 13 6 3.1625 1.2408 5.8251 14 6 2.8521 2.5257 6.5489 15 1 2.0727 3.1773 6.1821 16 6 3.5629 2.8694 7.6792 17 7 4.5115 2.0757 8.1261 18 14 3.1775 4.4618 8.5766 19 1 2.0756 5.1700 7.8771 20 1 2.7648 4.1571 9.9702 21 1 4.3863 5.3242 8.5957 22 6 0.9852 0.4302 4.8049 23 6 1.1591 -1.0634 4.5222 24 6 -0.1389 -1.7434 4.6615 25 7 -1.1428 -2.2671 4.7694 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2494 1.5048 -2.1237 32 1 3.0791 3.8216 -2.1246 33 1 3.3253 5.0464 -0.0040 34 1 2.7416 3.9569 2.1239 35 1 1.0157 0.9721 2.4769 36 1 3.0087 0.3979 6.4990 37 1 4.1999 1.2539 5.4905 38 1 5.0114 2.3173 8.9215 39 1 0.6109 0.5668 5.8194 40 1 0.2746 0.8540 4.0952 41 1 1.5334 -1.2000 3.5076 42 1 1.8696 -1.4872 5.2318 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201147939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:05 Heat of formation + Delta-G solvation = 56.824705 kcal Electronic energy + Delta-G solvation = -24027.945291 eV Core-core repulsion = 20712.702203 eV Total energy + Delta-G solvation = -3315.243088 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48038 -39.84717 -37.77331 -36.56890 -35.01470 -34.74478 -32.90722 -30.97421 -30.20008 -28.86249 -26.66666 -25.41290 -24.75037 -23.33971 -22.35029 -21.60005 -19.45935 -19.00649 -18.76279 -18.30734 -17.18502 -16.63196 -16.51742 -16.31403 -16.13883 -15.53601 -15.34488 -14.96163 -14.61332 -14.55322 -14.45046 -14.20764 -13.84809 -13.76992 -13.62573 -13.32796 -13.03968 -12.92529 -12.83274 -12.66067 -12.60824 -12.36646 -12.25587 -12.06104 -11.97477 -11.82401 -11.76055 -11.57966 -10.56309 -10.46225 -9.66474 -9.18706 -8.67680 -8.15771 -8.01830 -6.24327 0.06675 0.59461 0.82130 1.04981 1.39686 1.44821 1.51803 1.58628 1.71096 1.76720 2.28324 2.44997 2.94857 3.00110 3.19309 3.64833 3.76861 3.86243 3.99247 4.19934 4.24678 4.37757 4.42181 4.49665 4.52908 4.65404 4.71073 4.77860 4.78765 4.87645 5.07122 5.11144 5.22162 5.28643 5.34700 5.40395 5.49021 5.62344 5.72281 5.75657 5.82295 5.92077 6.08294 6.21713 6.43634 6.48257 6.80436 7.41892 8.91870 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.005059 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.136030 B = 5533.679983 C = 7559.986204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.088 4.088 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.132 4.132 7 C -0.090 4.090 8 C 0.121 3.879 9 N -0.623 5.623 10 C 0.579 3.421 11 S -0.721 6.721 12 N -0.531 5.531 13 C 0.253 3.747 14 C -0.522 4.522 15 H 0.049 0.951 16 C 0.022 3.978 17 N -0.920 5.920 18 Si 0.952 3.048 19 H -0.272 1.272 20 H -0.274 1.274 21 H -0.289 1.289 22 C 0.090 3.910 23 C -0.035 4.035 24 C 0.242 3.758 25 N -0.473 5.473 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.415 0.585 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.833 -5.261 -17.841 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.136 4.136 5 C -0.131 4.131 6 C -0.152 4.152 7 C -0.112 4.112 8 C 0.028 3.972 9 N -0.253 5.253 10 C 0.219 3.781 11 S -0.589 6.589 12 N -0.234 5.234 13 C 0.133 3.867 14 C -0.561 4.561 15 H 0.067 0.933 16 C -0.178 4.178 17 N -0.559 5.559 18 Si 0.778 3.222 19 H -0.196 1.196 20 H -0.199 1.199 21 H -0.215 1.215 22 C -0.037 4.037 23 C -0.077 4.077 24 C -0.076 4.076 25 N -0.151 5.151 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.166 0.834 33 H 0.147 0.853 34 H 0.123 0.877 35 H 0.258 0.742 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.119 0.881 41 H 0.149 0.851 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.269 -5.618 -17.460 21.021 hybrid contribution -0.275 0.776 1.276 1.518 sum -10.543 -4.841 -16.184 19.913 Atomic orbital electron populations 1.21770 0.93657 1.02685 1.02170 1.20569 0.96714 0.91087 1.03861 1.19955 1.01061 0.96690 0.91401 1.21130 0.99816 0.95248 0.97429 1.21445 0.98421 0.95020 0.98226 1.21122 1.01292 1.00858 0.91906 1.21221 0.97155 0.93835 0.98952 1.17350 1.04530 0.91690 0.83628 1.42175 1.23141 1.51883 1.08084 1.21748 0.90542 0.83576 0.82264 1.93450 1.13359 1.60044 1.92035 1.47550 1.19111 1.49799 1.06975 1.19512 0.90466 0.96847 0.79917 1.21378 1.18883 1.06273 1.09609 0.93287 1.25484 0.94694 0.99507 0.98080 1.69995 1.23046 1.38498 1.24397 0.85603 0.77781 0.80234 0.78556 1.19641 1.19928 1.21540 1.21959 0.84252 0.90815 1.06639 1.19714 0.87699 0.92601 1.07669 1.28885 0.94000 0.92854 0.91847 1.81350 1.12854 1.10489 1.10383 0.90878 0.93584 0.91684 0.88887 0.91632 0.82912 0.83386 0.85315 0.87673 0.74221 0.93405 0.93686 0.92653 0.87042 0.88116 0.85131 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.86 71.98 0.71 -0.98 16 2 C -0.08 -1.24 5.54 29.85 0.17 -1.07 16 3 C -0.09 -1.83 5.15 -19.74 -0.10 -1.93 16 4 C -0.12 -2.13 9.68 22.25 0.22 -1.92 16 5 C -0.11 -2.22 10.04 22.29 0.22 -2.00 16 6 C -0.13 -3.39 10.04 22.25 0.22 -3.17 16 7 C -0.09 -2.82 7.88 22.39 0.18 -2.65 16 8 C 0.12 3.29 5.81 38.16 0.22 3.52 16 9 N -0.62 -16.22 4.37 -189.99 -0.83 -17.05 16 10 C 0.58 20.41 7.46 179.06 1.34 21.74 16 11 S -0.72 -34.09 24.68 -56.49 -1.39 -35.48 16 12 N -0.53 -17.67 2.46 -714.14 -1.75 -19.42 16 13 C 0.25 11.35 4.92 85.63 0.42 11.77 16 14 C -0.52 -26.87 9.39 25.60 0.24 -26.63 16 15 H 0.05 2.56 7.81 -2.91 -0.02 2.53 16 16 C 0.02 1.19 5.46 84.66 0.46 1.66 16 17 N -0.92 -51.95 13.29 21.45 0.28 -51.67 16 18 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 C 0.09 1.94 5.09 86.38 0.44 2.38 16 23 C -0.04 -0.54 6.03 28.79 0.17 -0.37 16 24 C 0.24 4.49 15.44 89.42 1.38 5.87 16 25 N -0.47 -11.63 18.55 20.02 0.37 -11.26 16 26 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.05 0.56 7.23 -2.39 -0.02 0.54 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 1.08 8.05 -2.39 -0.02 1.06 16 30 H 0.07 1.01 7.59 -2.39 -0.02 0.99 16 31 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 32 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 33 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.11 4.05 6.54 -2.91 -0.02 4.03 16 35 H 0.42 7.74 5.28 -92.71 -0.49 7.25 16 36 H 0.05 2.09 8.07 -2.38 -0.02 2.08 16 37 H 0.05 2.41 6.58 -2.38 -0.02 2.39 16 38 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.11 2.55 8.07 -2.39 -0.02 2.53 16 40 H 0.10 1.67 6.44 -2.38 -0.02 1.65 16 41 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -74.08 368.68 5.54 -68.55 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.55 Total: 14.56 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 6.29 Total: 6.23 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -1.93 Total: -99.39 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -34.09 SS G_CDS: -1.39 Total: -35.48 kcal Total: -74.08 5.54 -68.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201147939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.372 kcal (2) G-P(sol) polarization free energy of solvation -74.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds