Wall clock time and date at job start Tue Mar 31 2020 12:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46864 * 2 1 4 4 C 1.53005 * 109.46790 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46913 * 179.97438 * 4 3 2 6 6 C 1.36937 * 119.99861 * 269.72147 * 5 4 3 7 7 H 1.07997 * 120.00073 * 5.74088 * 6 5 4 8 8 C 1.38808 * 119.99737 * 185.73984 * 6 5 4 9 9 N 1.31612 * 120.00342 * 354.99552 * 8 6 5 10 10 Si 1.86799 * 119.99653 * 174.99523 * 8 6 5 11 11 H 1.48501 * 109.47652 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46973 * 120.00287 * 10 8 6 13 13 H 1.48499 * 109.47531 * 239.99849 * 10 8 6 14 14 C 1.46505 * 119.99899 * 89.99367 * 5 4 3 15 15 C 1.50697 * 109.46605 * 85.44596 * 14 5 4 16 16 C 1.38268 * 119.94408 * 275.00624 * 15 14 5 17 17 C 1.38141 * 120.05913 * 179.72766 * 16 15 14 18 18 C 1.38741 * 119.94110 * 0.57415 * 17 16 15 19 19 O 1.35899 * 120.05623 * 179.67857 * 18 17 16 20 20 C 1.42903 * 116.99852 * 0.02636 * 19 18 17 21 21 F 1.39894 * 109.47518 * 59.99756 * 20 19 18 22 22 F 1.39903 * 109.46698 * 179.97438 * 20 19 18 23 23 F 1.39904 * 109.46945 * 299.99596 * 20 19 18 24 24 C 1.38728 * 119.88580 * 359.70080 * 18 17 16 25 25 C 1.38143 * 119.94657 * 0.02562 * 24 18 17 26 26 H 1.08999 * 109.47258 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47038 * 300.00374 * 1 2 3 28 28 H 1.08996 * 109.47240 * 60.00255 * 1 2 3 29 29 H 1.08996 * 109.47292 * 240.00054 * 2 1 3 30 30 H 1.09005 * 109.47091 * 119.99523 * 2 1 3 31 31 H 1.08996 * 109.47122 * 59.99950 * 3 2 1 32 32 H 1.09005 * 109.46877 * 299.99654 * 3 2 1 33 33 H 1.09000 * 109.47416 * 59.99440 * 4 3 2 34 34 H 1.09005 * 109.46787 * 299.99292 * 4 3 2 35 35 H 0.97003 * 120.00243 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.46692 * 205.44059 * 14 5 4 37 37 H 1.08996 * 109.46848 * 325.44294 * 14 5 4 38 38 H 1.08009 * 119.97171 * 359.97438 * 16 15 14 39 39 H 1.07998 * 120.03482 * 180.25417 * 17 16 15 40 40 H 1.08005 * 120.02803 * 179.97438 * 24 18 17 41 41 H 1.08002 * 119.97360 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.2914 3.4671 -1.1875 7 1 4.0285 2.9912 -2.1206 8 6 4.8657 4.7308 -1.1905 9 7 5.0956 5.3519 -0.0532 10 14 5.3123 5.5497 -2.8089 11 1 4.9546 4.6497 -3.9346 12 1 4.5655 6.8267 -2.9401 13 1 6.7714 5.8244 -2.8387 14 6 4.3028 3.5149 1.2672 15 6 5.6895 3.1876 1.7582 16 6 5.9074 2.0377 2.4944 17 6 7.1786 1.7324 2.9409 18 6 8.2349 2.5870 2.6601 19 8 9.4852 2.2923 3.1038 20 6 9.6399 1.0855 3.8533 21 9 9.2535 -0.0049 3.0667 22 9 10.9797 0.9380 4.2282 23 9 8.8382 1.1418 4.9985 24 6 8.0125 3.7430 1.9262 25 6 6.7405 4.0408 1.4771 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8901 33 1 3.9330 0.9288 -0.8908 34 1 3.9336 0.9287 0.8892 35 1 5.4972 6.2349 -0.0553 36 1 4.2150 4.5910 1.1175 37 1 3.5697 3.1896 2.0053 38 1 5.0838 1.3754 2.7173 39 1 7.3491 0.8321 3.5124 40 1 8.8331 4.4101 1.7066 41 1 6.5668 4.9408 0.9060 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204414723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:29 Heat of formation + Delta-G solvation = -144.073626 kcal Electronic energy + Delta-G solvation = -27163.506203 eV Core-core repulsion = 22822.649147 eV Total energy + Delta-G solvation = -4340.857056 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -50.29842 -48.04991 -47.87263 -39.64947 -37.60636 -36.04351 -34.22179 -31.55438 -30.35044 -30.08473 -27.90052 -26.23244 -25.00193 -23.82771 -22.26551 -21.61659 -20.77393 -20.03642 -19.14584 -18.99507 -18.65693 -17.14344 -16.21295 -15.24913 -15.17077 -14.98324 -14.92981 -14.64830 -14.43034 -14.35705 -14.19537 -13.99403 -13.93985 -13.77072 -13.56248 -13.30921 -13.21046 -12.78259 -12.55237 -12.30180 -12.08681 -11.57401 -11.32225 -11.04588 -10.94657 -10.74974 -10.60729 -10.46700 -10.39836 -10.23872 -10.07130 -9.83042 -9.52927 -8.79332 -8.25148 -7.59626 -6.94756 -5.60367 -3.32717 1.77095 2.01675 2.10795 3.06266 3.31417 3.39285 3.39829 3.97788 4.10218 4.35229 4.56029 5.14449 5.23134 5.27190 5.31607 5.35847 5.51852 5.69068 5.80771 5.87718 6.08621 6.08914 6.14360 6.22580 6.28417 6.29200 6.41329 6.48819 6.54313 6.65477 6.81260 6.85487 6.94418 7.01689 7.14725 7.41209 7.57504 7.74932 7.84573 7.99288 8.52830 9.21789 9.75737 10.11730 11.10141 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011243 B = 0.004322 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.899854 B = 6477.508585 C = 8364.269847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.137 4.137 4 C 0.145 3.855 5 N -0.593 5.593 6 C -0.197 4.197 7 H 0.078 0.922 8 C -0.029 4.029 9 N -0.913 5.913 10 Si 0.919 3.081 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.289 1.289 14 C 0.141 3.859 15 C -0.067 4.067 16 C -0.098 4.098 17 C -0.206 4.206 18 C 0.067 3.933 19 O -0.315 6.315 20 C 0.601 3.399 21 F -0.169 7.169 22 F -0.142 7.142 23 F -0.170 7.170 24 C -0.145 4.145 25 C -0.062 4.062 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.252 0.748 36 H 0.179 0.821 37 H 0.007 0.993 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 -6.836 6.092 9.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.177 4.177 4 C 0.018 3.982 5 N -0.311 5.311 6 C -0.326 4.326 7 H 0.096 0.904 8 C -0.219 4.219 9 N -0.568 5.568 10 Si 0.751 3.249 11 H -0.207 1.207 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.016 3.984 15 C -0.070 4.070 16 C -0.117 4.117 17 C -0.225 4.225 18 C 0.026 3.974 19 O -0.236 6.236 20 C 0.510 3.490 21 F -0.151 7.151 22 F -0.123 7.123 23 F -0.152 7.152 24 C -0.164 4.164 25 C -0.080 4.080 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.194 0.806 37 H 0.025 0.975 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.374 -6.627 6.003 9.251 hybrid contribution 0.511 -0.401 -0.449 0.790 sum 2.885 -7.028 5.553 9.410 Atomic orbital electron populations 1.21762 0.96641 1.00647 1.01622 1.21504 0.95163 0.98247 1.01200 1.22199 0.99098 0.94558 1.01802 1.20864 0.91552 0.86812 0.98985 1.44253 1.74655 1.09253 1.02936 1.19685 1.29250 0.97940 0.85682 0.90450 1.24667 1.01955 0.97774 0.97471 1.68943 1.51109 1.14732 1.21978 0.85884 0.77998 0.79002 0.82062 1.20749 1.21759 1.21582 1.21637 0.86544 1.06558 0.83665 1.21118 1.00572 0.92110 0.93236 1.20972 0.94885 0.97510 0.98296 1.21186 0.94054 1.00323 1.06889 1.18820 0.79896 0.97825 1.00835 1.86377 1.32318 1.37128 1.67776 1.19410 0.74534 0.78595 0.76438 1.93280 1.90870 1.56286 1.74681 1.93257 1.33024 1.95086 1.90958 1.93274 1.73919 1.95952 1.52035 1.20752 0.99272 0.95157 1.01198 1.23002 0.88603 1.02520 0.93876 0.93536 0.93041 0.92963 0.92574 0.92708 0.92803 0.92224 0.93937 0.94370 0.93424 0.80629 0.97512 0.86966 0.86705 0.86207 0.79473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.14 -2.32 5.54 -26.72 -0.15 -2.47 16 4 C 0.14 2.81 5.69 -4.04 -0.02 2.78 16 5 N -0.59 -13.49 2.52 -174.60 -0.44 -13.93 16 6 C -0.20 -4.85 9.81 -15.06 -0.15 -5.00 16 7 H 0.08 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.03 -0.70 5.45 -17.43 -0.09 -0.80 16 9 N -0.91 -22.09 5.73 55.49 0.32 -21.77 16 10 Si 0.92 20.23 29.56 -169.99 -5.02 15.21 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.14 3.14 5.29 -5.19 -0.03 3.11 16 15 C -0.07 -1.44 5.46 -104.60 -0.57 -2.01 16 16 C -0.10 -1.90 9.34 -39.61 -0.37 -2.27 16 17 C -0.21 -3.80 8.26 -39.43 -0.33 -4.12 16 18 C 0.07 1.27 6.48 -39.21 -0.25 1.01 16 19 O -0.32 -5.39 10.37 -19.42 -0.20 -5.59 16 20 C 0.60 8.85 3.42 101.05 0.35 9.20 16 21 F -0.17 -2.52 15.56 2.25 0.04 -2.49 16 22 F -0.14 -1.88 17.53 2.25 0.04 -1.84 16 23 F -0.17 -2.45 15.56 2.25 0.04 -2.42 16 24 C -0.14 -2.83 9.99 -39.44 -0.39 -3.22 16 25 C -0.06 -1.33 9.20 -39.61 -0.36 -1.69 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.04 0.83 8.04 -51.93 -0.42 0.42 16 34 H 0.04 0.71 7.04 -51.93 -0.37 0.35 16 35 H 0.25 5.93 8.08 -40.82 -0.33 5.60 16 36 H 0.18 4.34 4.55 -82.31 -0.37 3.97 16 37 H 0.01 0.14 8.08 -51.93 -0.42 -0.28 16 38 H 0.11 2.00 7.43 -52.48 -0.39 1.61 16 39 H 0.12 1.92 5.10 -52.49 -0.27 1.65 16 40 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 41 H 0.19 4.26 4.54 -52.69 -0.24 4.02 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -24.02 343.68 -7.62 -31.64 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.39 Total: 4.79 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.17 Total: -8.77 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.12 Total: -35.70 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.20 Total: -5.59 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.11 Total: -6.75 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -24.02 -7.62 -31.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204414723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.434 kcal (2) G-P(sol) polarization free energy of solvation -24.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds