Wall clock time and date at job start Tue Mar 31 2020 12:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46864 * 2 1 4 4 C 1.53005 * 109.46790 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46913 * 179.97438 * 4 3 2 6 6 C 1.36937 * 119.99861 * 269.72147 * 5 4 3 7 7 H 1.07997 * 120.00073 * 5.74088 * 6 5 4 8 8 C 1.38808 * 119.99737 * 185.73984 * 6 5 4 9 9 N 1.31612 * 120.00342 * 354.99552 * 8 6 5 10 10 Si 1.86799 * 119.99653 * 174.99523 * 8 6 5 11 11 H 1.48501 * 109.47652 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46973 * 120.00287 * 10 8 6 13 13 H 1.48499 * 109.47531 * 239.99849 * 10 8 6 14 14 C 1.46505 * 119.99899 * 89.99367 * 5 4 3 15 15 C 1.50697 * 109.46605 * 85.44596 * 14 5 4 16 16 C 1.38268 * 119.94408 * 275.00624 * 15 14 5 17 17 C 1.38141 * 120.05913 * 179.72766 * 16 15 14 18 18 C 1.38741 * 119.94110 * 0.57415 * 17 16 15 19 19 O 1.35899 * 120.05623 * 179.67857 * 18 17 16 20 20 C 1.42903 * 116.99852 * 0.02636 * 19 18 17 21 21 F 1.39894 * 109.47518 * 59.99756 * 20 19 18 22 22 F 1.39903 * 109.46698 * 179.97438 * 20 19 18 23 23 F 1.39904 * 109.46945 * 299.99596 * 20 19 18 24 24 C 1.38728 * 119.88580 * 359.70080 * 18 17 16 25 25 C 1.38143 * 119.94657 * 0.02562 * 24 18 17 26 26 H 1.08999 * 109.47258 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47038 * 300.00374 * 1 2 3 28 28 H 1.08996 * 109.47240 * 60.00255 * 1 2 3 29 29 H 1.08996 * 109.47292 * 240.00054 * 2 1 3 30 30 H 1.09005 * 109.47091 * 119.99523 * 2 1 3 31 31 H 1.08996 * 109.47122 * 59.99950 * 3 2 1 32 32 H 1.09005 * 109.46877 * 299.99654 * 3 2 1 33 33 H 1.09000 * 109.47416 * 59.99440 * 4 3 2 34 34 H 1.09005 * 109.46787 * 299.99292 * 4 3 2 35 35 H 0.97003 * 120.00243 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.46692 * 205.44059 * 14 5 4 37 37 H 1.08996 * 109.46848 * 325.44294 * 14 5 4 38 38 H 1.08009 * 119.97171 * 359.97438 * 16 15 14 39 39 H 1.07998 * 120.03482 * 180.25417 * 17 16 15 40 40 H 1.08005 * 120.02803 * 179.97438 * 24 18 17 41 41 H 1.08002 * 119.97360 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.2914 3.4671 -1.1875 7 1 4.0285 2.9912 -2.1206 8 6 4.8657 4.7308 -1.1905 9 7 5.0956 5.3519 -0.0532 10 14 5.3123 5.5497 -2.8089 11 1 4.9546 4.6497 -3.9346 12 1 4.5655 6.8267 -2.9401 13 1 6.7714 5.8244 -2.8387 14 6 4.3028 3.5149 1.2672 15 6 5.6895 3.1876 1.7582 16 6 5.9074 2.0377 2.4944 17 6 7.1786 1.7324 2.9409 18 6 8.2349 2.5870 2.6601 19 8 9.4852 2.2923 3.1038 20 6 9.6399 1.0855 3.8533 21 9 9.2535 -0.0049 3.0667 22 9 10.9797 0.9380 4.2282 23 9 8.8382 1.1418 4.9985 24 6 8.0125 3.7430 1.9262 25 6 6.7405 4.0408 1.4771 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8901 33 1 3.9330 0.9288 -0.8908 34 1 3.9336 0.9287 0.8892 35 1 5.4972 6.2349 -0.0553 36 1 4.2150 4.5910 1.1175 37 1 3.5697 3.1896 2.0053 38 1 5.0838 1.3754 2.7173 39 1 7.3491 0.8321 3.5124 40 1 8.8331 4.4101 1.7066 41 1 6.5668 4.9408 0.9060 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204414723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:28 Heat of formation + Delta-G solvation = -152.497870 kcal Electronic energy + Delta-G solvation = -27163.871506 eV Core-core repulsion = 22822.649147 eV Total energy + Delta-G solvation = -4341.222359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.46691 -49.18645 -49.05385 -41.09902 -39.14752 -37.55649 -35.63519 -33.22614 -31.86367 -31.64906 -29.33236 -27.72247 -26.50997 -25.29734 -23.75178 -23.06535 -22.11107 -21.54108 -20.50661 -20.18024 -19.92749 -18.91521 -17.60868 -16.97666 -16.62372 -16.23046 -16.18379 -15.92644 -15.80481 -15.52634 -15.46224 -15.37482 -15.20374 -15.19462 -15.12293 -14.79785 -14.52926 -14.18155 -14.01963 -13.71130 -13.42017 -13.10990 -12.86989 -12.71772 -12.52295 -12.17497 -12.04450 -11.98541 -11.92763 -11.76892 -11.64633 -11.32708 -11.21254 -10.60428 -9.79089 -9.15792 -8.70077 -7.42761 -5.17430 0.47709 0.51434 0.56535 1.53442 1.57646 1.63167 1.81408 2.55716 2.78727 2.83051 3.05168 3.32581 3.78256 3.83724 3.90942 4.16072 4.28126 4.36364 4.42683 4.52777 4.55747 4.64694 4.83774 4.88591 4.97262 5.03660 5.06821 5.10542 5.19285 5.26532 5.32234 5.40772 5.50590 5.55798 5.60642 5.63541 5.88419 6.02214 6.19844 6.34765 6.72590 7.37772 7.97909 8.30921 9.23841 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011243 B = 0.004322 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.899854 B = 6477.508585 C = 8364.269847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.125 4.125 4 C 0.143 3.857 5 N -0.605 5.605 6 C -0.217 4.217 7 H 0.072 0.928 8 C -0.062 4.062 9 N -0.915 5.915 10 Si 0.968 3.032 11 H -0.281 1.281 12 H -0.294 1.294 13 H -0.294 1.294 14 C 0.145 3.855 15 C -0.085 4.085 16 C -0.097 4.097 17 C -0.202 4.202 18 C 0.071 3.929 19 O -0.321 6.321 20 C 0.607 3.393 21 F -0.168 7.168 22 F -0.130 7.130 23 F -0.165 7.165 24 C -0.150 4.150 25 C -0.080 4.080 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.047 0.953 35 H 0.250 0.750 36 H 0.156 0.844 37 H 0.012 0.988 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 -8.358 6.785 11.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.165 4.165 4 C 0.018 3.982 5 N -0.324 5.324 6 C -0.346 4.346 7 H 0.090 0.910 8 C -0.251 4.251 9 N -0.570 5.570 10 Si 0.799 3.201 11 H -0.207 1.207 12 H -0.221 1.221 13 H -0.222 1.222 14 C 0.020 3.980 15 C -0.088 4.088 16 C -0.116 4.116 17 C -0.220 4.220 18 C 0.029 3.971 19 O -0.241 6.241 20 C 0.516 3.484 21 F -0.150 7.150 22 F -0.111 7.111 23 F -0.147 7.147 24 C -0.168 4.168 25 C -0.098 4.098 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.172 0.828 37 H 0.030 0.970 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.680 -8.165 6.713 10.905 hybrid contribution 0.480 0.052 -0.601 0.771 sum 3.160 -8.113 6.112 10.637 Atomic orbital electron populations 1.21737 0.95187 1.01960 1.01550 1.21456 0.96410 0.95770 1.01909 1.22029 0.97277 0.96690 1.00477 1.20981 0.92941 0.85270 0.99050 1.44384 1.75183 1.10378 1.02453 1.19794 1.30025 0.98486 0.86293 0.91041 1.25197 1.02212 0.98289 0.99425 1.69182 1.50763 1.14543 1.22498 0.85148 0.77055 0.77967 0.79964 1.20664 1.22100 1.22161 1.21366 0.87560 1.05319 0.83743 1.21052 0.99927 0.93286 0.94551 1.21089 0.95917 0.96942 0.97642 1.21394 0.93467 1.00781 1.06396 1.18803 0.80633 0.97461 1.00199 1.86346 1.31353 1.38383 1.68038 1.19272 0.75036 0.77847 0.76228 1.93286 1.90917 1.56049 1.74742 1.93291 1.32167 1.94913 1.90765 1.93286 1.73894 1.95875 1.51692 1.20825 0.98977 0.95911 1.01123 1.22808 0.89688 1.02401 0.94889 0.91520 0.92960 0.93266 0.92156 0.91684 0.93594 0.94021 0.94494 0.93481 0.93707 0.82847 0.97024 0.85359 0.84676 0.84732 0.81048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.91 71.98 0.71 -2.55 16 2 C -0.12 -3.03 5.93 30.60 0.18 -2.85 16 3 C -0.12 -4.18 5.54 30.60 0.17 -4.01 16 4 C 0.14 5.51 5.69 86.38 0.49 6.01 16 5 N -0.60 -27.82 2.52 -706.31 -1.78 -29.60 16 6 C -0.22 -10.86 9.81 84.03 0.82 -10.04 16 7 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 8 C -0.06 -3.07 5.45 84.86 0.46 -2.60 16 9 N -0.92 -45.30 5.73 21.65 0.12 -45.18 16 10 Si 0.97 42.10 29.56 68.60 2.03 44.13 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 13 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 14 C 0.14 6.55 5.29 85.63 0.45 7.01 16 15 C -0.09 -3.64 5.46 -19.85 -0.11 -3.75 16 16 C -0.10 -3.63 9.34 22.25 0.21 -3.42 16 17 C -0.20 -7.01 8.26 22.37 0.18 -6.83 16 18 C 0.07 2.54 6.48 22.51 0.15 2.68 16 19 O -0.32 -10.25 10.37 -92.42 -0.96 -11.21 16 20 C 0.61 16.29 3.42 113.37 0.39 16.68 16 21 F -0.17 -4.56 15.56 44.97 0.70 -3.86 16 22 F -0.13 -3.11 17.53 44.97 0.79 -2.32 16 23 F -0.17 -4.33 15.56 44.97 0.70 -3.63 16 24 C -0.15 -5.73 9.99 22.36 0.22 -5.50 16 25 C -0.08 -3.42 9.20 22.25 0.20 -3.22 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.04 1.44 8.04 -2.39 -0.02 1.42 16 34 H 0.05 1.70 7.04 -2.38 -0.02 1.69 16 35 H 0.25 12.03 8.08 -92.71 -0.75 11.28 16 36 H 0.16 7.79 4.55 -62.37 -0.28 7.51 16 37 H 0.01 0.50 8.08 -2.39 -0.02 0.48 16 38 H 0.13 4.30 7.43 -2.91 -0.02 4.28 16 39 H 0.14 4.10 5.10 -2.91 -0.01 4.09 16 40 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.17 8.00 4.54 -3.32 -0.02 7.98 16 Total: -1.00 -50.42 343.68 6.95 -43.48 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.80 Total: 20.59 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 4.54 Total: -12.40 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -1.65 Total: -74.78 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.96 Total: -11.21 kcal Atomic # 9 Polarization: -12.00 SS G_CDS: 2.19 Total: -9.81 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -50.42 6.95 -43.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204414723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.022 kcal (2) G-P(sol) polarization free energy of solvation -50.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds