Wall clock time and date at job start Tue Mar 31 2020 12:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 C 1.52996 * 109.47535 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47426 * 179.97438 * 4 3 2 6 6 C 1.36944 * 119.99900 * 270.00011 * 5 4 3 7 7 H 1.07997 * 119.99813 * 322.68809 * 6 5 4 8 8 C 1.38804 * 119.99843 * 142.69377 * 6 5 4 9 9 N 1.31619 * 120.00119 * 162.13962 * 8 6 5 10 10 Si 1.86808 * 120.00091 * 342.13550 * 8 6 5 11 11 H 1.48500 * 109.46917 * 95.56667 * 10 8 6 12 12 H 1.48498 * 109.47162 * 215.56406 * 10 8 6 13 13 H 1.48496 * 109.47036 * 335.56495 * 10 8 6 14 14 C 1.46498 * 120.00112 * 90.00049 * 5 4 3 15 15 C 1.50697 * 109.47363 * 85.18992 * 14 5 4 16 16 C 1.38168 * 120.02725 * 257.12016 * 15 14 5 17 17 C 1.38246 * 120.05681 * 179.97438 * 16 15 14 18 18 C 1.38287 * 120.11092 * 0.02562 * 17 16 15 19 19 C 1.38125 * 120.05531 * 0.02592 * 18 17 16 20 20 C 1.38701 * 120.03100 * 76.84124 * 15 14 5 21 21 O 1.35905 * 120.05234 * 0.02562 * 20 15 14 22 22 C 1.42905 * 116.99914 * 180.32788 * 21 20 15 23 23 F 1.39899 * 109.47289 * 59.99689 * 22 21 20 24 24 F 1.39900 * 109.46879 * 180.02562 * 22 21 20 25 25 F 1.39900 * 109.46967 * 299.99839 * 22 21 20 26 26 H 1.09008 * 109.46855 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47169 * 299.99863 * 1 2 3 28 28 H 1.09001 * 109.47128 * 60.00250 * 1 2 3 29 29 H 1.08999 * 109.47169 * 240.00137 * 2 1 3 30 30 H 1.09000 * 109.47577 * 120.00026 * 2 1 3 31 31 H 1.08995 * 109.46937 * 59.99502 * 3 2 1 32 32 H 1.09001 * 109.46891 * 299.99895 * 3 2 1 33 33 H 1.09002 * 109.46862 * 59.99501 * 4 3 2 34 34 H 1.09005 * 109.47165 * 300.00557 * 4 3 2 35 35 H 0.97004 * 120.00202 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.46968 * 205.19270 * 14 5 4 37 37 H 1.09004 * 109.46752 * 325.18997 * 14 5 4 38 38 H 1.08006 * 119.97121 * 359.97418 * 16 15 14 39 39 H 1.08001 * 119.94072 * 179.97438 * 17 16 15 40 40 H 1.08001 * 119.97411 * 179.97438 * 18 17 16 41 41 H 1.07999 * 120.02576 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.2859 3.4690 -1.1875 7 1 4.6954 2.9269 -2.0271 8 6 3.9907 4.8196 -1.3108 9 7 4.5156 5.5211 -2.2930 10 14 2.8481 5.6418 -0.0826 11 1 3.6523 6.2902 0.9843 12 1 2.0295 6.6674 -0.7778 13 1 1.9545 4.6215 0.5219 14 6 4.3029 3.5148 1.2671 15 6 5.6873 3.1826 1.7613 16 6 5.8557 2.2683 2.7834 17 6 7.1254 1.9627 3.2369 18 6 8.2299 2.5713 2.6693 19 6 8.0668 3.4867 1.6479 20 6 6.7938 3.7900 1.1865 21 8 6.6311 4.6857 0.1774 22 6 7.8157 5.2666 -0.3717 23 9 8.6316 4.2569 -0.8933 24 9 7.4679 6.1591 -1.3914 25 9 8.5072 5.9529 0.6323 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9337 0.9286 0.8891 35 1 4.3095 6.4651 -2.3789 36 1 4.2194 4.5911 1.1165 37 1 3.5671 3.1929 2.0041 38 1 4.9946 1.7920 3.2286 39 1 7.2548 1.2481 4.0362 40 1 9.2208 2.3312 3.0256 41 1 8.9297 3.9620 1.2053 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204428349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:33 Heat of formation + Delta-G solvation = -151.749075 kcal Electronic energy + Delta-G solvation = -28543.245801 eV Core-core repulsion = 24202.055913 eV Total energy + Delta-G solvation = -4341.189889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.75413 -47.43066 -47.32406 -39.78908 -37.13996 -36.42274 -34.18401 -31.83193 -30.92526 -29.87308 -28.20459 -25.79759 -25.23770 -24.03378 -22.18429 -21.69099 -20.96860 -19.94889 -19.00377 -18.49215 -18.21566 -16.90835 -16.12657 -15.55999 -15.37459 -14.90183 -14.66881 -14.47103 -14.10981 -14.00870 -13.90768 -13.79436 -13.68523 -13.65120 -13.41930 -13.33479 -12.91700 -12.78995 -12.55993 -12.27600 -12.13886 -11.99718 -11.55338 -11.35237 -11.33317 -10.91651 -10.68425 -10.66026 -10.50013 -10.28277 -9.88851 -9.83617 -9.53507 -8.59407 -8.46768 -7.96411 -6.84613 -5.90478 -3.33407 1.60768 1.68544 2.31786 3.33216 3.46037 3.50398 3.51009 3.99385 4.53771 4.56319 4.69130 5.02323 5.05354 5.11398 5.29308 5.35114 5.35711 5.52486 5.54975 5.59132 5.67650 5.84994 5.89956 6.01828 6.11642 6.18709 6.26376 6.31319 6.31523 6.46772 6.51756 6.55000 6.64819 6.68282 6.80240 6.91151 7.01249 7.09004 7.48221 8.09368 8.43060 8.99710 9.76599 10.13559 11.23968 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.006346 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.445689 B = 4410.911050 C = 5755.294929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.154 3.846 5 N -0.595 5.595 6 C -0.259 4.259 7 H 0.077 0.923 8 C 0.052 3.948 9 N -0.890 5.890 10 Si 0.868 3.132 11 H -0.287 1.287 12 H -0.303 1.303 13 H -0.267 1.267 14 C 0.171 3.829 15 C -0.096 4.096 16 C -0.087 4.087 17 C -0.149 4.149 18 C -0.096 4.096 19 C -0.201 4.201 20 C 0.131 3.869 21 O -0.258 6.258 22 C 0.596 3.404 23 F -0.175 7.175 24 F -0.120 7.120 25 F -0.185 7.185 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.642 -5.972 9.124 11.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.387 4.387 7 H 0.095 0.905 8 C -0.150 4.150 9 N -0.530 5.530 10 Si 0.699 3.301 11 H -0.215 1.215 12 H -0.232 1.232 13 H -0.192 1.192 14 C 0.045 3.955 15 C -0.100 4.100 16 C -0.106 4.106 17 C -0.167 4.167 18 C -0.115 4.115 19 C -0.219 4.219 20 C 0.087 3.913 21 O -0.176 6.176 22 C 0.505 3.495 23 F -0.157 7.157 24 F -0.101 7.101 25 F -0.167 7.167 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.489 -5.720 8.864 11.111 hybrid contribution -0.198 0.788 0.483 0.945 sum 3.291 -4.933 9.347 11.070 Atomic orbital electron populations 1.21768 0.96731 1.00601 1.01634 1.21496 0.95119 0.98169 1.01200 1.22205 0.99081 0.94662 1.01977 1.20888 0.91180 0.86088 0.99066 1.44142 1.74296 1.11651 1.01406 1.18684 1.37160 0.93112 0.89757 0.90511 1.25298 0.97240 0.96720 0.95717 1.69800 1.43063 1.07460 1.32692 0.87075 0.82567 0.79145 0.81309 1.21511 1.23184 1.19203 1.20252 0.88832 0.97830 0.88573 1.20302 0.97165 0.97041 0.95466 1.20854 0.97279 0.96633 0.95871 1.21006 0.92604 1.01645 1.01463 1.20741 0.98687 0.96223 0.95809 1.21483 0.95347 1.03391 1.01716 1.18611 0.94085 0.90489 0.88093 1.86992 1.26900 1.54997 1.48667 1.19625 0.77108 0.76353 0.76410 1.93231 1.73893 1.61239 1.87330 1.93355 1.92061 1.66664 1.57989 1.93217 1.80539 1.80911 1.62070 0.93532 0.93202 0.92863 0.92367 0.92800 0.93251 0.91621 0.93109 0.94485 0.92868 0.91493 0.93193 0.85609 0.86254 0.86096 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.15 0.37 -1.52 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.85 16 3 C -0.14 -2.44 5.54 -26.73 -0.15 -2.59 16 4 C 0.15 2.94 5.69 -4.05 -0.02 2.92 16 5 N -0.59 -13.54 2.10 -174.62 -0.37 -13.90 16 6 C -0.26 -6.90 8.92 -15.06 -0.13 -7.03 16 7 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 8 C 0.05 1.43 4.62 -17.43 -0.08 1.34 16 9 N -0.89 -25.90 13.97 55.49 0.78 -25.13 16 10 Si 0.87 21.89 24.73 -169.99 -4.20 17.69 16 11 H -0.29 -7.18 6.74 56.52 0.38 -6.80 16 12 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 13 H -0.27 -6.50 7.05 56.52 0.40 -6.10 16 14 C 0.17 3.64 4.03 -5.20 -0.02 3.62 16 15 C -0.10 -1.86 5.47 -104.48 -0.57 -2.43 16 16 C -0.09 -1.36 9.66 -39.60 -0.38 -1.75 16 17 C -0.15 -2.05 10.04 -39.56 -0.40 -2.45 16 18 C -0.10 -1.38 10.04 -39.60 -0.40 -1.78 16 19 C -0.20 -3.45 8.26 -39.43 -0.33 -3.77 16 20 C 0.13 2.66 6.46 -39.22 -0.25 2.41 16 21 O -0.26 -5.87 7.84 -19.44 -0.15 -6.03 16 22 C 0.60 12.11 3.42 101.05 0.35 12.45 16 23 F -0.17 -3.38 15.60 2.25 0.04 -3.34 16 24 F -0.12 -2.62 17.53 2.25 0.04 -2.58 16 25 F -0.18 -3.30 15.52 2.25 0.03 -3.26 16 26 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 1.60 2.95 -51.93 -0.15 1.45 16 37 H 0.05 0.95 7.94 -51.93 -0.41 0.54 16 38 H 0.13 1.66 8.02 -52.48 -0.42 1.24 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.13 2.05 5.10 -52.49 -0.27 1.78 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -28.85 345.79 -6.28 -35.13 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.48 Total: -1.35 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.18 Total: -2.43 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.41 Total: -39.03 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.15 Total: -6.03 kcal Atomic # 9 Polarization: -9.30 SS G_CDS: 0.11 Total: -9.19 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.20 Total: 17.69 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.85 -6.28 -35.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204428349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.616 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds