Wall clock time and date at job start Tue Mar 31 2020 12:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 C 1.52996 * 109.47535 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47426 * 179.97438 * 4 3 2 6 6 C 1.36944 * 119.99900 * 270.00011 * 5 4 3 7 7 H 1.07997 * 119.99813 * 322.68809 * 6 5 4 8 8 C 1.38804 * 119.99843 * 142.69377 * 6 5 4 9 9 N 1.31619 * 120.00119 * 162.13962 * 8 6 5 10 10 Si 1.86808 * 120.00091 * 342.13550 * 8 6 5 11 11 H 1.48500 * 109.46917 * 95.56667 * 10 8 6 12 12 H 1.48498 * 109.47162 * 215.56406 * 10 8 6 13 13 H 1.48496 * 109.47036 * 335.56495 * 10 8 6 14 14 C 1.46498 * 120.00112 * 90.00049 * 5 4 3 15 15 C 1.50697 * 109.47363 * 85.18992 * 14 5 4 16 16 C 1.38168 * 120.02725 * 257.12016 * 15 14 5 17 17 C 1.38246 * 120.05681 * 179.97438 * 16 15 14 18 18 C 1.38287 * 120.11092 * 0.02562 * 17 16 15 19 19 C 1.38125 * 120.05531 * 0.02592 * 18 17 16 20 20 C 1.38701 * 120.03100 * 76.84124 * 15 14 5 21 21 O 1.35905 * 120.05234 * 0.02562 * 20 15 14 22 22 C 1.42905 * 116.99914 * 180.32788 * 21 20 15 23 23 F 1.39899 * 109.47289 * 59.99689 * 22 21 20 24 24 F 1.39900 * 109.46879 * 180.02562 * 22 21 20 25 25 F 1.39900 * 109.46967 * 299.99839 * 22 21 20 26 26 H 1.09008 * 109.46855 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47169 * 299.99863 * 1 2 3 28 28 H 1.09001 * 109.47128 * 60.00250 * 1 2 3 29 29 H 1.08999 * 109.47169 * 240.00137 * 2 1 3 30 30 H 1.09000 * 109.47577 * 120.00026 * 2 1 3 31 31 H 1.08995 * 109.46937 * 59.99502 * 3 2 1 32 32 H 1.09001 * 109.46891 * 299.99895 * 3 2 1 33 33 H 1.09002 * 109.46862 * 59.99501 * 4 3 2 34 34 H 1.09005 * 109.47165 * 300.00557 * 4 3 2 35 35 H 0.97004 * 120.00202 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.46968 * 205.19270 * 14 5 4 37 37 H 1.09004 * 109.46752 * 325.18997 * 14 5 4 38 38 H 1.08006 * 119.97121 * 359.97418 * 16 15 14 39 39 H 1.08001 * 119.94072 * 179.97438 * 17 16 15 40 40 H 1.08001 * 119.97411 * 179.97438 * 18 17 16 41 41 H 1.07999 * 120.02576 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.2859 3.4690 -1.1875 7 1 4.6954 2.9269 -2.0271 8 6 3.9907 4.8196 -1.3108 9 7 4.5156 5.5211 -2.2930 10 14 2.8481 5.6418 -0.0826 11 1 3.6523 6.2902 0.9843 12 1 2.0295 6.6674 -0.7778 13 1 1.9545 4.6215 0.5219 14 6 4.3029 3.5148 1.2671 15 6 5.6873 3.1826 1.7613 16 6 5.8557 2.2683 2.7834 17 6 7.1254 1.9627 3.2369 18 6 8.2299 2.5713 2.6693 19 6 8.0668 3.4867 1.6479 20 6 6.7938 3.7900 1.1865 21 8 6.6311 4.6857 0.1774 22 6 7.8157 5.2666 -0.3717 23 9 8.6316 4.2569 -0.8933 24 9 7.4679 6.1591 -1.3914 25 9 8.5072 5.9529 0.6323 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9337 0.9286 0.8891 35 1 4.3095 6.4651 -2.3789 36 1 4.2194 4.5911 1.1165 37 1 3.5671 3.1929 2.0041 38 1 4.9946 1.7920 3.2286 39 1 7.2548 1.2481 4.0362 40 1 9.2208 2.3312 3.0256 41 1 8.9297 3.9620 1.2053 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204428349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:32 Heat of formation + Delta-G solvation = -167.122355 kcal Electronic energy + Delta-G solvation = -28543.912437 eV Core-core repulsion = 24202.055913 eV Total energy + Delta-G solvation = -4341.856524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.34452 -48.99231 -48.97014 -41.19435 -38.64557 -37.94322 -35.54708 -33.72026 -32.38169 -31.15428 -29.63887 -27.46467 -26.76296 -25.63426 -23.55586 -23.08578 -22.31976 -21.48854 -20.47251 -20.07939 -19.80911 -18.76630 -17.64615 -17.10229 -16.92546 -16.32351 -16.10203 -16.00084 -15.67241 -15.62675 -15.38517 -15.31599 -15.27652 -15.11325 -15.00366 -14.77686 -14.57937 -14.20289 -14.12345 -13.91699 -13.56431 -13.36726 -12.92311 -12.86953 -12.74565 -12.50998 -12.14951 -11.92566 -11.82361 -11.79083 -11.70124 -11.43537 -11.24440 -10.56683 -9.82865 -9.31533 -8.70070 -8.03456 -5.42222 0.36102 0.40373 0.77171 1.30228 1.40478 1.48302 1.92779 2.48767 2.71011 2.94312 3.11554 3.29594 3.49942 3.77426 3.84160 4.16666 4.18698 4.25020 4.33440 4.37152 4.44541 4.56605 4.58020 4.61827 4.81628 4.88861 5.03232 5.07325 5.08399 5.11687 5.21162 5.32844 5.41233 5.44468 5.53178 5.56819 5.65233 5.74681 6.05156 6.16114 6.28452 7.08502 7.74859 8.14925 9.14410 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.006346 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.445689 B = 4410.911050 C = 5755.294929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.131 4.131 4 C 0.153 3.847 5 N -0.607 5.607 6 C -0.237 4.237 7 H 0.033 0.967 8 C 0.010 3.990 9 N -0.931 5.931 10 Si 0.919 3.081 11 H -0.288 1.288 12 H -0.318 1.318 13 H -0.251 1.251 14 C 0.171 3.829 15 C -0.122 4.122 16 C -0.080 4.080 17 C -0.133 4.133 18 C -0.086 4.086 19 C -0.211 4.211 20 C 0.092 3.908 21 O -0.291 6.291 22 C 0.600 3.400 23 F -0.171 7.171 24 F -0.136 7.136 25 F -0.170 7.170 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.032 0.968 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.255 0.745 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.156 0.844 39 H 0.165 0.835 40 H 0.159 0.841 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.796 -8.678 12.784 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.171 4.171 4 C 0.028 3.972 5 N -0.328 5.328 6 C -0.367 4.367 7 H 0.051 0.949 8 C -0.188 4.188 9 N -0.575 5.575 10 Si 0.751 3.249 11 H -0.216 1.216 12 H -0.247 1.247 13 H -0.175 1.175 14 C 0.046 3.954 15 C -0.126 4.126 16 C -0.099 4.099 17 C -0.151 4.151 18 C -0.104 4.104 19 C -0.230 4.230 20 C 0.049 3.951 21 O -0.210 6.210 22 C 0.509 3.491 23 F -0.154 7.154 24 F -0.117 7.117 25 F -0.152 7.152 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.174 0.826 39 H 0.183 0.817 40 H 0.176 0.824 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.639 -8.469 12.572 15.589 hybrid contribution -0.095 1.487 -0.542 1.585 sum 3.544 -6.982 12.030 14.354 Atomic orbital electron populations 1.21756 0.95584 1.01961 1.01328 1.21440 0.96093 0.95501 1.02257 1.22074 0.97709 0.96984 1.00320 1.20999 0.92229 0.84227 0.99738 1.44223 1.75198 1.12668 1.00739 1.18350 1.35232 0.92747 0.90324 0.94897 1.25666 0.98636 0.97298 0.97158 1.69925 1.45207 1.07309 1.35017 0.86238 0.80941 0.78230 0.79507 1.21638 1.24733 1.17534 1.20167 0.91142 0.95902 0.88182 1.20307 0.95457 0.99155 0.97653 1.21226 0.99471 0.94959 0.94202 1.21514 0.91266 1.01004 1.01325 1.21257 1.00997 0.94187 0.93959 1.21640 0.94129 1.04439 1.02801 1.19089 0.95894 0.91592 0.88565 1.86912 1.27886 1.56127 1.50054 1.19476 0.77060 0.76272 0.76324 1.93224 1.73675 1.61092 1.87364 1.93313 1.92273 1.67259 1.58865 1.93231 1.80100 1.80609 1.61303 0.91335 0.92833 0.93930 0.92366 0.90647 0.93271 0.94869 0.94547 0.91544 0.93578 0.94572 0.90608 0.82642 0.81736 0.82367 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.91 71.98 0.71 -2.65 16 2 C -0.11 -2.91 5.93 30.59 0.18 -2.72 16 3 C -0.13 -4.43 5.54 30.59 0.17 -4.26 16 4 C 0.15 5.67 5.69 86.38 0.49 6.16 16 5 N -0.61 -27.66 2.10 -706.36 -1.48 -29.14 16 6 C -0.24 -13.16 8.92 84.03 0.75 -12.41 16 7 H 0.03 2.10 8.06 -2.91 -0.02 2.07 16 8 C 0.01 0.58 4.62 84.86 0.39 0.97 16 9 N -0.93 -57.25 13.97 21.65 0.30 -56.95 16 10 Si 0.92 46.83 24.73 68.60 1.70 48.53 16 11 H -0.29 -14.53 6.74 99.48 0.67 -13.86 16 12 H -0.32 -16.68 7.11 99.48 0.71 -15.97 16 13 H -0.25 -11.92 7.05 99.48 0.70 -11.22 16 14 C 0.17 7.11 4.03 85.63 0.34 7.45 16 15 C -0.12 -4.52 5.47 -19.77 -0.11 -4.63 16 16 C -0.08 -2.14 9.66 22.25 0.22 -1.92 16 17 C -0.13 -2.90 10.04 22.28 0.22 -2.67 16 18 C -0.09 -2.08 10.04 22.25 0.22 -1.86 16 19 C -0.21 -6.88 8.26 22.37 0.18 -6.70 16 20 C 0.09 3.67 6.46 22.50 0.15 3.81 16 21 O -0.29 -13.68 7.84 -92.48 -0.73 -14.41 16 22 C 0.60 25.23 3.42 113.37 0.39 25.62 16 23 F -0.17 -6.81 15.60 44.97 0.70 -6.11 16 24 F -0.14 -6.29 17.53 44.97 0.79 -5.50 16 25 F -0.17 -6.16 15.52 44.97 0.70 -5.46 16 26 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.43 8.04 -2.39 -0.02 1.42 16 34 H 0.07 2.07 8.07 -2.38 -0.02 2.05 16 35 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 36 H 0.04 1.74 2.95 -2.39 -0.01 1.73 16 37 H 0.08 2.68 7.94 -2.39 -0.02 2.66 16 38 H 0.16 3.18 8.02 -2.91 -0.02 3.15 16 39 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.13 3.97 5.10 -2.91 -0.01 3.96 16 Total: -1.00 -67.45 345.79 7.29 -60.15 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.00 Total: 4.69 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 4.31 Total: 4.19 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -1.18 Total: -86.09 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.73 Total: -14.41 kcal Atomic # 9 Polarization: -19.26 SS G_CDS: 2.19 Total: -17.07 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.70 Total: 48.53 kcal Total: -67.45 7.29 -60.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204428349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.969 kcal (2) G-P(sol) polarization free energy of solvation -67.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds