Wall clock time and date at job start Tue Mar 31 2020 12:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47641 * 2 1 4 4 C 1.52987 * 109.47290 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47282 * 180.02562 * 4 3 2 6 6 C 1.36941 * 119.99785 * 275.65473 * 5 4 3 7 7 H 1.08000 * 119.99602 * 34.00814 * 6 5 4 8 8 C 1.38808 * 119.99956 * 214.00407 * 6 5 4 9 9 N 1.31618 * 120.00328 * 22.91348 * 8 6 5 10 10 Si 1.86805 * 119.99729 * 202.91996 * 8 6 5 11 11 H 1.48494 * 109.47020 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47310 * 119.99989 * 10 8 6 13 13 H 1.48501 * 109.46759 * 239.99743 * 10 8 6 14 14 C 1.46498 * 120.00250 * 95.65285 * 5 4 3 15 15 C 1.50698 * 109.47312 * 270.00473 * 14 5 4 16 16 C 1.38291 * 119.97113 * 270.02516 * 15 14 5 17 17 C 1.38239 * 120.11118 * 180.02562 * 16 15 14 18 18 C 1.38171 * 120.05502 * 359.67230 * 17 16 15 19 19 C 1.38712 * 119.94248 * 0.57941 * 18 17 16 20 20 O 1.35894 * 120.05377 * 179.72104 * 19 18 17 21 21 C 1.42903 * 117.00152 * 359.72455 * 20 19 18 22 22 F 1.39899 * 109.47333 * 60.00030 * 21 20 19 23 23 F 1.39903 * 109.47042 * 180.02562 * 21 20 19 24 24 F 1.39903 * 109.47197 * 299.99957 * 21 20 19 25 25 C 1.38118 * 119.97236 * 89.99814 * 15 14 5 26 26 H 1.08996 * 109.47440 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46484 * 299.99730 * 1 2 3 28 28 H 1.08998 * 109.47158 * 59.99183 * 1 2 3 29 29 H 1.08998 * 109.46837 * 240.00070 * 2 1 3 30 30 H 1.08998 * 109.47158 * 120.00817 * 2 1 3 31 31 H 1.08998 * 109.46423 * 60.00148 * 3 2 1 32 32 H 1.09001 * 109.46794 * 300.00685 * 3 2 1 33 33 H 1.08998 * 109.47458 * 60.00548 * 4 3 2 34 34 H 1.09001 * 109.47570 * 299.99975 * 4 3 2 35 35 H 0.96994 * 120.00098 * 179.97438 * 9 8 6 36 36 H 1.09006 * 109.47185 * 150.00002 * 14 5 4 37 37 H 1.09005 * 109.47017 * 30.00128 * 14 5 4 38 38 H 1.08001 * 119.94466 * 359.97438 * 16 15 14 39 39 H 1.08000 * 119.97532 * 179.97438 * 17 16 15 40 40 H 1.07998 * 120.02384 * 180.29616 * 18 17 16 41 41 H 1.07999 * 120.03393 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1761 3.5087 -1.1799 7 1 3.4716 3.3323 -1.9792 8 6 5.2006 4.4300 -1.3483 9 7 6.2916 4.3420 -0.6173 10 14 5.0309 5.7948 -2.6125 11 1 3.7196 5.6737 -3.2986 12 1 5.1146 7.1124 -1.9327 13 1 6.1240 5.6828 -3.6114 14 6 4.4210 3.4718 1.2627 15 6 3.2124 4.1653 1.8366 16 6 2.9480 5.4812 1.5036 17 6 1.8405 6.1204 2.0288 18 6 0.9910 5.4434 2.8827 19 6 1.2569 4.1250 3.2223 20 8 0.4260 3.4588 4.0664 21 6 -0.6998 4.1796 4.5716 22 9 -1.5032 4.5969 3.5051 23 9 -1.4425 3.3502 5.4189 24 9 -0.2556 5.2974 5.2860 25 6 2.3695 3.4859 2.6942 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9284 0.8891 35 1 7.0076 4.9855 -0.7353 36 1 5.2085 4.2037 1.0825 37 1 4.7776 2.7206 1.9675 38 1 3.6084 6.0107 0.8328 39 1 1.6363 7.1482 1.7676 40 1 0.1232 5.9417 3.2889 41 1 2.5763 2.4583 2.9540 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204433963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:37 Heat of formation + Delta-G solvation = -164.809135 kcal Electronic energy + Delta-G solvation = -27654.387925 eV Core-core repulsion = 23312.631710 eV Total energy + Delta-G solvation = -4341.756215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.43481 -48.17621 -48.01495 -39.93803 -37.73915 -36.07284 -34.09960 -31.67036 -30.77342 -30.04548 -27.91408 -26.09097 -25.51937 -23.90578 -22.35629 -21.84927 -20.86863 -20.22086 -19.13653 -19.10870 -18.72834 -16.83284 -16.27966 -15.88965 -15.14857 -15.02670 -14.89438 -14.82039 -14.66785 -14.48659 -14.35979 -14.18557 -14.11685 -13.86192 -13.60402 -13.58100 -13.37654 -13.01238 -12.63627 -12.21572 -11.98761 -11.59194 -11.32852 -11.21362 -11.11524 -10.95908 -10.70259 -10.57658 -10.45166 -10.28129 -10.10249 -9.96771 -9.77281 -8.59024 -8.38093 -8.06616 -6.72555 -5.90036 -3.42485 1.59118 1.68400 1.73803 2.89364 3.28344 3.38975 3.42174 3.82239 3.92026 4.18701 4.42001 4.96490 5.08751 5.19356 5.30984 5.39708 5.49483 5.59098 5.68051 5.76278 5.78517 5.97050 5.97331 6.16381 6.28032 6.33472 6.36983 6.37604 6.42027 6.55182 6.61566 6.66184 6.76783 6.91538 6.96724 7.14857 7.25074 7.40322 7.57781 7.74536 8.39406 9.06878 9.70421 10.26200 11.10066 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.004733 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.542243 B = 5914.444944 C = 7228.709025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.141 4.141 4 C 0.148 3.852 5 N -0.574 5.574 6 C -0.250 4.250 7 H 0.063 0.937 8 C 0.010 3.990 9 N -0.884 5.884 10 Si 0.891 3.109 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.289 1.289 14 C 0.167 3.833 15 C -0.033 4.033 16 C -0.113 4.113 17 C -0.087 4.087 18 C -0.211 4.211 19 C 0.089 3.911 20 O -0.312 6.312 21 C 0.602 3.398 22 F -0.168 7.168 23 F -0.139 7.139 24 F -0.169 7.169 25 C -0.122 4.122 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.036 0.964 35 H 0.256 0.744 36 H 0.114 0.886 37 H 0.038 0.962 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 -1.012 8.851 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.021 3.979 5 N -0.292 5.292 6 C -0.380 4.380 7 H 0.080 0.920 8 C -0.190 4.190 9 N -0.527 5.527 10 Si 0.720 3.280 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.216 1.216 14 C 0.041 3.959 15 C -0.037 4.037 16 C -0.132 4.132 17 C -0.105 4.105 18 C -0.230 4.230 19 C 0.048 3.952 20 O -0.233 6.233 21 C 0.511 3.489 22 F -0.150 7.150 23 F -0.120 7.120 24 F -0.151 7.151 25 C -0.141 4.141 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.131 0.869 37 H 0.056 0.944 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.874 -1.119 8.877 14.082 hybrid contribution -0.638 1.037 -0.512 1.321 sum -11.513 -0.082 8.365 14.231 Atomic orbital electron populations 1.21756 0.96775 1.00554 1.01545 1.21489 0.95045 0.98308 1.01159 1.22263 0.99342 0.94589 1.01910 1.20930 0.91310 0.86625 0.98988 1.43756 1.75292 1.08199 1.01933 1.19079 1.07450 1.18555 0.92898 0.91957 1.25047 0.94169 1.01421 0.98331 1.69968 1.04583 1.35821 1.42283 0.86414 0.77877 0.82461 0.81276 1.20022 1.21237 1.21582 1.20218 0.92344 0.97333 0.85995 1.21247 0.98281 0.93316 0.90865 1.21204 0.97461 0.95084 0.99487 1.20898 0.94205 0.99476 0.95963 1.21215 1.02989 0.93662 1.05121 1.18724 0.91392 0.91861 0.93272 1.86395 1.34853 1.40353 1.61669 1.19389 0.78880 0.74809 0.75794 1.93289 1.74760 1.90047 1.56866 1.93274 1.75495 1.72836 1.70413 1.93283 1.89156 1.53538 1.79099 1.20332 0.93097 1.00441 1.00276 0.93564 0.93122 0.93089 0.92560 0.92721 0.92410 0.92544 0.93573 0.94607 0.93382 0.86856 0.94373 0.85426 0.86022 0.86095 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.78 5.93 -26.73 -0.16 -1.94 16 3 C -0.14 -2.51 5.51 -26.74 -0.15 -2.66 16 4 C 0.15 2.94 5.72 -4.05 -0.02 2.92 16 5 N -0.57 -13.21 2.44 -174.61 -0.43 -13.64 16 6 C -0.25 -6.38 9.48 -15.06 -0.14 -6.52 16 7 H 0.06 1.63 7.93 -52.49 -0.42 1.21 16 8 C 0.01 0.26 4.95 -17.43 -0.09 0.18 16 9 N -0.88 -23.65 11.31 55.49 0.63 -23.03 16 10 Si 0.89 20.40 29.61 -169.99 -5.03 15.37 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.17 3.63 5.46 -5.20 -0.03 3.60 16 15 C -0.03 -0.65 5.44 -104.65 -0.57 -1.22 16 16 C -0.11 -2.14 9.70 -39.56 -0.38 -2.52 16 17 C -0.09 -1.42 10.04 -39.61 -0.40 -1.82 16 18 C -0.21 -3.35 8.26 -39.43 -0.33 -3.68 16 19 C 0.09 1.48 6.48 -39.22 -0.25 1.22 16 20 O -0.31 -4.77 10.37 -19.41 -0.20 -4.97 16 21 C 0.60 7.88 3.42 101.05 0.35 8.23 16 22 F -0.17 -2.21 15.55 2.25 0.04 -2.18 16 23 F -0.14 -1.66 17.53 2.25 0.04 -1.62 16 24 F -0.17 -2.16 15.58 2.25 0.04 -2.12 16 25 C -0.12 -2.15 7.81 -39.44 -0.31 -2.46 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.06 6.13 -51.93 -0.32 0.74 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 34 H 0.04 0.67 7.83 -51.93 -0.41 0.26 16 35 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.11 2.77 5.26 -51.93 -0.27 2.50 16 37 H 0.04 0.78 7.80 -51.93 -0.40 0.38 16 38 H 0.13 2.55 8.06 -52.49 -0.42 2.12 16 39 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.12 1.72 5.10 -52.49 -0.27 1.45 16 41 H 0.13 2.11 8.02 -52.49 -0.42 1.69 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -25.89 351.26 -7.19 -33.08 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.44 Total: 2.09 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.11 Total: -8.27 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.20 Total: -36.67 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.20 Total: -4.97 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.93 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -25.89 -7.19 -33.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204433963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.733 kcal (2) G-P(sol) polarization free energy of solvation -25.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds