Wall clock time and date at job start Tue Mar 31 2020 12:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47641 * 2 1 4 4 C 1.52987 * 109.47290 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47282 * 180.02562 * 4 3 2 6 6 C 1.36941 * 119.99785 * 275.65473 * 5 4 3 7 7 H 1.08000 * 119.99602 * 34.00814 * 6 5 4 8 8 C 1.38808 * 119.99956 * 214.00407 * 6 5 4 9 9 N 1.31618 * 120.00328 * 22.91348 * 8 6 5 10 10 Si 1.86805 * 119.99729 * 202.91996 * 8 6 5 11 11 H 1.48494 * 109.47020 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47310 * 119.99989 * 10 8 6 13 13 H 1.48501 * 109.46759 * 239.99743 * 10 8 6 14 14 C 1.46498 * 120.00250 * 95.65285 * 5 4 3 15 15 C 1.50698 * 109.47312 * 270.00473 * 14 5 4 16 16 C 1.38291 * 119.97113 * 270.02516 * 15 14 5 17 17 C 1.38239 * 120.11118 * 180.02562 * 16 15 14 18 18 C 1.38171 * 120.05502 * 359.67230 * 17 16 15 19 19 C 1.38712 * 119.94248 * 0.57941 * 18 17 16 20 20 O 1.35894 * 120.05377 * 179.72104 * 19 18 17 21 21 C 1.42903 * 117.00152 * 359.72455 * 20 19 18 22 22 F 1.39899 * 109.47333 * 60.00030 * 21 20 19 23 23 F 1.39903 * 109.47042 * 180.02562 * 21 20 19 24 24 F 1.39903 * 109.47197 * 299.99957 * 21 20 19 25 25 C 1.38118 * 119.97236 * 89.99814 * 15 14 5 26 26 H 1.08996 * 109.47440 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46484 * 299.99730 * 1 2 3 28 28 H 1.08998 * 109.47158 * 59.99183 * 1 2 3 29 29 H 1.08998 * 109.46837 * 240.00070 * 2 1 3 30 30 H 1.08998 * 109.47158 * 120.00817 * 2 1 3 31 31 H 1.08998 * 109.46423 * 60.00148 * 3 2 1 32 32 H 1.09001 * 109.46794 * 300.00685 * 3 2 1 33 33 H 1.08998 * 109.47458 * 60.00548 * 4 3 2 34 34 H 1.09001 * 109.47570 * 299.99975 * 4 3 2 35 35 H 0.96994 * 120.00098 * 179.97438 * 9 8 6 36 36 H 1.09006 * 109.47185 * 150.00002 * 14 5 4 37 37 H 1.09005 * 109.47017 * 30.00128 * 14 5 4 38 38 H 1.08001 * 119.94466 * 359.97438 * 16 15 14 39 39 H 1.08000 * 119.97532 * 179.97438 * 17 16 15 40 40 H 1.07998 * 120.02384 * 180.29616 * 18 17 16 41 41 H 1.07999 * 120.03393 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1761 3.5087 -1.1799 7 1 3.4716 3.3323 -1.9792 8 6 5.2006 4.4300 -1.3483 9 7 6.2916 4.3420 -0.6173 10 14 5.0309 5.7948 -2.6125 11 1 3.7196 5.6737 -3.2986 12 1 5.1146 7.1124 -1.9327 13 1 6.1240 5.6828 -3.6114 14 6 4.4210 3.4718 1.2627 15 6 3.2124 4.1653 1.8366 16 6 2.9480 5.4812 1.5036 17 6 1.8405 6.1204 2.0288 18 6 0.9910 5.4434 2.8827 19 6 1.2569 4.1250 3.2223 20 8 0.4260 3.4588 4.0664 21 6 -0.6998 4.1796 4.5716 22 9 -1.5032 4.5969 3.5051 23 9 -1.4425 3.3502 5.4189 24 9 -0.2556 5.2974 5.2860 25 6 2.3695 3.4859 2.6942 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9284 0.8891 35 1 7.0076 4.9855 -0.7353 36 1 5.2085 4.2037 1.0825 37 1 4.7776 2.7206 1.9675 38 1 3.6084 6.0107 0.8328 39 1 1.6363 7.1482 1.7676 40 1 0.1232 5.9417 3.2889 41 1 2.5763 2.4583 2.9540 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204433963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:36 Heat of formation + Delta-G solvation = -175.359724 kcal Electronic energy + Delta-G solvation = -27654.845433 eV Core-core repulsion = 23312.631710 eV Total energy + Delta-G solvation = -4342.213723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.46821 -49.18471 -49.05583 -41.24169 -39.14965 -37.60833 -35.55657 -33.41863 -32.26986 -31.39664 -29.38851 -27.60872 -26.87159 -25.44824 -23.68536 -23.20159 -22.29661 -21.71401 -20.27406 -20.18339 -19.95749 -18.60345 -17.61171 -17.23790 -16.71678 -16.34270 -16.23296 -16.11105 -15.83689 -15.53059 -15.46704 -15.39650 -15.31221 -15.21888 -15.11150 -15.07958 -14.68358 -14.24251 -14.01780 -13.67285 -13.34372 -13.14743 -12.90648 -12.81041 -12.69673 -12.48591 -12.23345 -12.09022 -11.93710 -11.84628 -11.73489 -11.56921 -11.26906 -10.49959 -9.77623 -9.45612 -8.59690 -7.82658 -5.39543 0.30190 0.37279 0.47144 1.44072 1.49885 1.58248 1.78785 2.50642 2.68464 2.76538 2.99097 3.25111 3.70345 3.79004 3.81829 4.13610 4.18144 4.23301 4.35508 4.40800 4.44144 4.55913 4.57943 4.83225 4.91437 4.99040 5.05767 5.07398 5.09126 5.10499 5.19847 5.37837 5.41190 5.48073 5.52443 5.61332 5.66824 5.74837 5.88894 6.04646 6.47612 7.16420 7.85747 8.37088 9.13860 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.004733 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.542243 B = 5914.444944 C = 7228.709025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.126 4.126 4 C 0.146 3.854 5 N -0.588 5.588 6 C -0.255 4.255 7 H 0.050 0.950 8 C -0.027 4.027 9 N -0.911 5.911 10 Si 0.943 3.057 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.293 1.293 14 C 0.173 3.827 15 C -0.045 4.045 16 C -0.132 4.132 17 C -0.080 4.080 18 C -0.204 4.204 19 C 0.093 3.907 20 O -0.318 6.318 21 C 0.608 3.392 22 F -0.166 7.166 23 F -0.129 7.129 24 F -0.164 7.164 25 C -0.124 4.124 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.253 0.747 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.108 0.892 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.197 -0.996 9.833 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.166 4.166 4 C 0.020 3.980 5 N -0.307 5.307 6 C -0.385 4.385 7 H 0.068 0.932 8 C -0.225 4.225 9 N -0.556 5.556 10 Si 0.771 3.229 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.220 1.220 14 C 0.047 3.953 15 C -0.048 4.048 16 C -0.151 4.151 17 C -0.098 4.098 18 C -0.223 4.223 19 C 0.051 3.949 20 O -0.238 6.238 21 C 0.517 3.483 22 F -0.148 7.148 23 F -0.111 7.111 24 F -0.146 7.146 25 C -0.143 4.143 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.126 0.874 39 H 0.169 0.831 40 H 0.161 0.839 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.036 -1.111 9.877 16.393 hybrid contribution -0.044 0.996 -0.719 1.229 sum -13.080 -0.115 9.158 15.968 Atomic orbital electron populations 1.21720 0.95399 1.01912 1.01247 1.21453 0.96206 0.95940 1.01956 1.22057 0.97414 0.96621 1.00490 1.21023 0.92781 0.85261 0.98892 1.43917 1.75729 1.09362 1.01734 1.19131 1.06860 1.18912 0.93606 0.93199 1.25547 0.93960 1.02961 0.99994 1.70069 1.05159 1.36483 1.43852 0.85608 0.77438 0.80464 0.79382 1.19868 1.20911 1.22013 1.19999 0.92819 0.96793 0.85726 1.20899 0.97867 0.93777 0.92259 1.21157 0.98555 0.95161 1.00225 1.21141 0.92901 1.00688 0.95034 1.21492 1.03230 0.93337 1.04239 1.18693 0.91165 0.92053 0.92992 1.86368 1.35325 1.40787 1.61325 1.19258 0.78343 0.74860 0.75823 1.93297 1.74581 1.89995 1.56902 1.93303 1.75086 1.72643 1.70050 1.93296 1.89120 1.53255 1.78949 1.20265 0.93326 1.00712 1.00018 0.91389 0.93322 0.93501 0.92193 0.91509 0.92873 0.94782 0.94867 0.93369 0.93704 0.89725 0.93963 0.87352 0.83134 0.83891 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.91 71.98 0.71 -2.81 16 2 C -0.12 -3.24 5.93 30.59 0.18 -3.06 16 3 C -0.13 -4.43 5.51 30.59 0.17 -4.26 16 4 C 0.15 5.86 5.72 86.37 0.49 6.35 16 5 N -0.59 -27.72 2.44 -706.35 -1.73 -29.44 16 6 C -0.25 -13.33 9.48 84.03 0.80 -12.53 16 7 H 0.05 2.69 7.93 -2.91 -0.02 2.66 16 8 C -0.03 -1.43 4.95 84.86 0.42 -1.01 16 9 N -0.91 -50.25 11.31 21.65 0.24 -50.00 16 10 Si 0.94 42.75 29.61 68.60 2.03 44.78 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 14 C 0.17 7.69 5.46 85.63 0.47 8.16 16 15 C -0.04 -1.74 5.44 -19.88 -0.11 -1.85 16 16 C -0.13 -4.96 9.70 22.28 0.22 -4.74 16 17 C -0.08 -2.45 10.04 22.25 0.22 -2.22 16 18 C -0.20 -5.94 8.26 22.37 0.18 -5.75 16 19 C 0.09 2.88 6.48 22.51 0.15 3.03 16 20 O -0.32 -8.87 10.37 -92.36 -0.96 -9.83 16 21 C 0.61 14.11 3.42 113.37 0.39 14.50 16 22 F -0.17 -3.86 15.55 44.97 0.70 -3.16 16 23 F -0.13 -2.74 17.53 44.97 0.79 -1.95 16 24 F -0.16 -3.69 15.58 44.97 0.70 -2.99 16 25 C -0.12 -4.24 7.81 22.36 0.17 -4.06 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.91 6.13 -2.39 -0.01 1.89 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.03 1.39 8.09 -2.39 -0.02 1.37 16 34 H 0.05 1.79 7.83 -2.39 -0.02 1.77 16 35 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 36 H 0.09 4.32 5.26 -2.38 -0.01 4.31 16 37 H 0.04 1.77 7.80 -2.38 -0.02 1.76 16 38 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 39 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 40 H 0.14 3.53 5.10 -2.91 -0.01 3.51 16 41 H 0.13 4.31 8.02 -2.91 -0.02 4.28 16 Total: -1.00 -55.58 351.26 7.29 -48.30 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.04 Total: 14.56 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 4.47 Total: -10.27 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -1.48 Total: -79.45 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.96 Total: -9.83 kcal Atomic # 9 Polarization: -10.29 SS G_CDS: 2.19 Total: -8.10 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -55.58 7.29 -48.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204433963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.063 kcal (2) G-P(sol) polarization free energy of solvation -55.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds