Wall clock time and date at job start Tue Mar 31 2020 12:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47054 * 2 1 4 4 C 1.53002 * 109.46699 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46952 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99683 * 270.00245 * 5 4 3 7 7 H 1.07991 * 120.00733 * 317.49584 * 6 5 4 8 8 C 1.38821 * 119.99514 * 137.49988 * 6 5 4 9 9 N 1.31617 * 119.99998 * 340.71813 * 8 6 5 10 10 Si 1.86798 * 119.99814 * 160.71512 * 8 6 5 11 11 H 1.48506 * 109.47228 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47004 * 120.00033 * 10 8 6 13 13 H 1.48505 * 109.47052 * 240.00265 * 10 8 6 14 14 C 1.46502 * 119.99777 * 90.00017 * 5 4 3 15 15 C 1.50698 * 109.46622 * 83.88586 * 14 5 4 16 16 C 1.38387 * 120.03931 * 84.32467 * 15 14 5 17 17 F 1.35106 * 119.99604 * 359.74407 * 16 15 14 18 18 C 1.38475 * 120.00598 * 179.71740 * 16 15 14 19 19 C 1.38249 * 120.08417 * 359.97438 * 18 16 15 20 20 C 1.38135 * 120.08020 * 0.02562 * 19 18 16 21 21 C 1.38665 * 120.04326 * 264.04069 * 15 14 5 22 22 O 1.35902 * 120.04332 * 0.26145 * 21 15 14 23 23 C 1.42896 * 117.00191 * 179.97438 * 22 21 15 24 24 F 1.39895 * 109.47116 * 299.99362 * 23 22 21 25 25 F 1.39894 * 109.47194 * 59.99973 * 23 22 21 26 26 H 1.08994 * 109.47117 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46599 * 300.00068 * 1 2 3 28 28 H 1.08999 * 109.47049 * 60.00184 * 1 2 3 29 29 H 1.08999 * 109.46953 * 239.99716 * 2 1 3 30 30 H 1.08999 * 109.47049 * 119.99816 * 2 1 3 31 31 H 1.08997 * 109.46965 * 60.00127 * 3 2 1 32 32 H 1.08999 * 109.47043 * 299.99820 * 3 2 1 33 33 H 1.09003 * 109.46890 * 60.00592 * 4 3 2 34 34 H 1.08999 * 109.47290 * 299.99746 * 4 3 2 35 35 H 0.96997 * 119.99903 * 185.07749 * 9 8 6 36 36 H 1.09001 * 109.46811 * 323.88712 * 14 5 4 37 37 H 1.08993 * 109.46636 * 203.88903 * 14 5 4 38 38 H 1.08001 * 119.95884 * 179.97438 * 18 16 15 39 39 H 1.07999 * 119.95515 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.00038 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.46987 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0585 2.8237 0.0000 6 6 4.2871 3.4685 -1.1862 7 1 4.7741 2.9490 -1.9981 8 6 3.8930 4.7901 -1.3450 9 7 2.9874 5.3077 -0.5424 10 14 4.6480 5.8337 -2.6978 11 1 5.6343 5.0230 -3.4563 12 1 3.5795 6.3014 -3.6168 13 1 5.3311 7.0066 -2.0952 14 6 4.3021 3.5150 1.2685 15 6 5.6738 3.1575 1.7799 16 6 6.7838 3.8491 1.3274 17 9 6.6385 4.8420 0.4227 18 6 8.0433 3.5239 1.8021 19 6 8.1940 2.5090 2.7287 20 6 7.0884 1.8164 3.1827 21 6 5.8248 2.1392 2.7088 22 8 4.7365 1.4586 3.1553 23 6 4.9668 0.4219 4.1114 24 9 5.8128 -0.5444 3.5567 25 9 5.5649 0.9652 5.2534 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9288 0.8909 35 1 2.6580 6.2066 -0.6984 36 1 3.5516 3.2107 1.9981 37 1 4.2416 4.5921 1.1126 38 1 8.9091 4.0639 1.4482 39 1 9.1772 2.2574 3.0979 40 1 7.2076 1.0234 3.9063 41 1 4.0172 -0.0390 4.3833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207117848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:56 Heat of formation + Delta-G solvation = -157.130721 kcal Electronic energy + Delta-G solvation = -28216.924080 eV Core-core repulsion = 23875.500826 eV Total energy + Delta-G solvation = -4341.423254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.31077 -48.05961 -47.29936 -39.68815 -36.97489 -36.14405 -33.98488 -31.66931 -30.65079 -29.63175 -27.80886 -26.12136 -25.53973 -23.80202 -22.12293 -21.86458 -20.71384 -19.80464 -18.82598 -18.08564 -17.86567 -16.72141 -16.37100 -15.86986 -15.24655 -15.01816 -14.73553 -14.62144 -14.54057 -14.29952 -13.83944 -13.66509 -13.55237 -13.44491 -13.33986 -13.25699 -12.85232 -12.60493 -12.18460 -12.06505 -11.85200 -11.41113 -11.33751 -11.27103 -11.02797 -10.80723 -10.53475 -10.46253 -10.34572 -10.24105 -9.97165 -9.85784 -9.54858 -8.45247 -8.15172 -8.08051 -6.47485 -5.81674 -3.36145 1.56438 1.63654 2.70715 3.38493 3.47518 3.49361 3.50402 3.93204 4.33929 4.51861 4.68695 4.86763 5.08236 5.22930 5.33049 5.35328 5.43166 5.50756 5.70590 5.71302 5.79894 5.84013 6.14184 6.24861 6.27686 6.33599 6.44742 6.49688 6.52813 6.60079 6.60273 6.74990 6.80695 6.95292 7.03834 7.17766 7.35969 7.44969 7.53331 7.87562 8.58736 9.20359 9.81056 10.43499 11.23073 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010166 B = 0.006754 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.684543 B = 4144.686036 C = 6379.063227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.130 4.130 4 C 0.150 3.850 5 N -0.571 5.571 6 C -0.262 4.262 7 H 0.056 0.944 8 C 0.030 3.970 9 N -0.883 5.883 10 Si 0.891 3.109 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.194 3.806 15 C -0.129 4.129 16 C 0.148 3.852 17 F -0.118 7.118 18 C -0.186 4.186 19 C -0.078 4.078 20 C -0.209 4.209 21 C 0.126 3.874 22 O -0.306 6.306 23 C 0.410 3.590 24 F -0.201 7.201 25 F -0.203 7.203 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.256 0.744 36 H 0.043 0.957 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 -9.351 9.632 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.170 4.170 4 C 0.025 3.975 5 N -0.289 5.289 6 C -0.391 4.391 7 H 0.073 0.927 8 C -0.172 4.172 9 N -0.524 5.524 10 Si 0.721 3.279 11 H -0.200 1.200 12 H -0.217 1.217 13 H -0.211 1.211 14 C 0.067 3.933 15 C -0.134 4.134 16 C 0.128 3.872 17 F -0.096 7.096 18 C -0.205 4.205 19 C -0.096 4.096 20 C -0.228 4.228 21 C 0.082 3.918 22 O -0.223 6.223 23 C 0.319 3.681 24 F -0.183 7.183 25 F -0.185 7.185 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.115 0.885 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.390 -9.100 9.563 13.629 hybrid contribution 0.638 0.606 -0.693 1.120 sum 4.028 -8.493 8.870 12.924 Atomic orbital electron populations 1.21755 0.96861 1.00258 1.01671 1.21528 0.94994 0.98803 1.00709 1.22103 0.99025 0.93673 1.02153 1.20934 0.91438 0.87091 0.98078 1.43669 1.73544 1.10359 1.01365 1.18968 1.33353 0.94671 0.92153 0.92659 1.25248 0.95675 0.99078 0.97207 1.69939 1.27551 1.16184 1.38730 0.86415 0.79083 0.80779 0.81670 1.19987 1.21726 1.21136 1.19701 0.85960 1.00562 0.87086 1.20752 1.00978 0.95446 0.96252 1.17187 0.92753 0.87728 0.89558 1.91570 1.96415 1.57717 1.63878 1.21067 0.96142 1.01540 1.01783 1.20503 0.98010 0.94835 0.96290 1.21386 0.92037 1.04233 1.05117 1.18327 0.84796 0.93184 0.95536 1.86690 1.32674 1.46479 1.56433 1.23351 0.90699 0.78748 0.75290 1.93083 1.75196 1.64317 1.85697 1.93075 1.86631 1.86544 1.52239 0.93835 0.93140 0.92957 0.92840 0.93123 0.93030 0.91862 0.94420 0.94624 0.93432 0.93831 0.88470 0.85276 0.85472 0.85365 0.80624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.13 -2.56 5.54 -26.73 -0.15 -2.71 16 4 C 0.15 3.21 5.68 -4.04 -0.02 3.19 16 5 N -0.57 -14.06 2.37 -174.60 -0.41 -14.47 16 6 C -0.26 -7.10 9.38 -15.06 -0.14 -7.24 16 7 H 0.06 1.54 7.90 -52.49 -0.41 1.13 16 8 C 0.03 0.81 4.90 -17.43 -0.09 0.72 16 9 N -0.88 -25.02 11.80 55.49 0.66 -24.36 16 10 Si 0.89 21.93 29.60 -169.99 -5.03 16.90 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 C 0.19 4.56 4.94 -5.19 -0.03 4.54 16 15 C -0.13 -2.70 5.47 -104.41 -0.57 -3.27 16 16 C 0.15 3.04 7.24 -39.44 -0.29 2.75 16 17 F -0.12 -2.71 16.55 2.25 0.04 -2.68 16 18 C -0.19 -3.10 10.02 -39.49 -0.40 -3.49 16 19 C -0.08 -1.15 10.04 -39.62 -0.40 -1.55 16 20 C -0.21 -3.30 8.26 -39.42 -0.33 -3.63 16 21 C 0.13 2.26 6.43 -39.23 -0.25 2.01 16 22 O -0.31 -4.90 8.31 -19.43 -0.16 -5.06 16 23 C 0.41 4.72 5.97 101.05 0.60 5.33 16 24 F -0.20 -2.56 15.58 2.25 0.04 -2.52 16 25 F -0.20 -2.49 15.58 2.25 0.04 -2.46 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.04 0.81 8.04 -51.93 -0.42 0.40 16 34 H 0.04 0.71 6.95 -51.93 -0.36 0.35 16 35 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 36 H 0.04 1.00 7.33 -51.93 -0.38 0.62 16 37 H 0.10 2.60 5.60 -51.93 -0.29 2.31 16 38 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 40 H 0.13 1.81 5.10 -52.48 -0.27 1.55 16 41 H 0.18 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -30.01 351.32 -6.88 -36.90 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.49 Total: -0.45 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.84 Total: -7.09 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.24 Total: -38.83 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.16 Total: -5.06 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 0.11 Total: -7.66 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.01 -6.88 -36.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207117848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.235 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds