Wall clock time and date at job start Tue Mar 31 2020 12:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47054 * 2 1 4 4 C 1.53002 * 109.46699 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46952 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99683 * 270.00245 * 5 4 3 7 7 H 1.07991 * 120.00733 * 317.49584 * 6 5 4 8 8 C 1.38821 * 119.99514 * 137.49988 * 6 5 4 9 9 N 1.31617 * 119.99998 * 340.71813 * 8 6 5 10 10 Si 1.86798 * 119.99814 * 160.71512 * 8 6 5 11 11 H 1.48506 * 109.47228 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47004 * 120.00033 * 10 8 6 13 13 H 1.48505 * 109.47052 * 240.00265 * 10 8 6 14 14 C 1.46502 * 119.99777 * 90.00017 * 5 4 3 15 15 C 1.50698 * 109.46622 * 83.88586 * 14 5 4 16 16 C 1.38387 * 120.03931 * 84.32467 * 15 14 5 17 17 F 1.35106 * 119.99604 * 359.74407 * 16 15 14 18 18 C 1.38475 * 120.00598 * 179.71740 * 16 15 14 19 19 C 1.38249 * 120.08417 * 359.97438 * 18 16 15 20 20 C 1.38135 * 120.08020 * 0.02562 * 19 18 16 21 21 C 1.38665 * 120.04326 * 264.04069 * 15 14 5 22 22 O 1.35902 * 120.04332 * 0.26145 * 21 15 14 23 23 C 1.42896 * 117.00191 * 179.97438 * 22 21 15 24 24 F 1.39895 * 109.47116 * 299.99362 * 23 22 21 25 25 F 1.39894 * 109.47194 * 59.99973 * 23 22 21 26 26 H 1.08994 * 109.47117 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46599 * 300.00068 * 1 2 3 28 28 H 1.08999 * 109.47049 * 60.00184 * 1 2 3 29 29 H 1.08999 * 109.46953 * 239.99716 * 2 1 3 30 30 H 1.08999 * 109.47049 * 119.99816 * 2 1 3 31 31 H 1.08997 * 109.46965 * 60.00127 * 3 2 1 32 32 H 1.08999 * 109.47043 * 299.99820 * 3 2 1 33 33 H 1.09003 * 109.46890 * 60.00592 * 4 3 2 34 34 H 1.08999 * 109.47290 * 299.99746 * 4 3 2 35 35 H 0.96997 * 119.99903 * 185.07749 * 9 8 6 36 36 H 1.09001 * 109.46811 * 323.88712 * 14 5 4 37 37 H 1.08993 * 109.46636 * 203.88903 * 14 5 4 38 38 H 1.08001 * 119.95884 * 179.97438 * 18 16 15 39 39 H 1.07999 * 119.95515 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.00038 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.46987 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0585 2.8237 0.0000 6 6 4.2871 3.4685 -1.1862 7 1 4.7741 2.9490 -1.9981 8 6 3.8930 4.7901 -1.3450 9 7 2.9874 5.3077 -0.5424 10 14 4.6480 5.8337 -2.6978 11 1 5.6343 5.0230 -3.4563 12 1 3.5795 6.3014 -3.6168 13 1 5.3311 7.0066 -2.0952 14 6 4.3021 3.5150 1.2685 15 6 5.6738 3.1575 1.7799 16 6 6.7838 3.8491 1.3274 17 9 6.6385 4.8420 0.4227 18 6 8.0433 3.5239 1.8021 19 6 8.1940 2.5090 2.7287 20 6 7.0884 1.8164 3.1827 21 6 5.8248 2.1392 2.7088 22 8 4.7365 1.4586 3.1553 23 6 4.9668 0.4219 4.1114 24 9 5.8128 -0.5444 3.5567 25 9 5.5649 0.9652 5.2534 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9288 0.8909 35 1 2.6580 6.2066 -0.6984 36 1 3.5516 3.2107 1.9981 37 1 4.2416 4.5921 1.1126 38 1 8.9091 4.0639 1.4482 39 1 9.1772 2.2574 3.0979 40 1 7.2076 1.0234 3.9063 41 1 4.0172 -0.0390 4.3833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207117848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:55 Heat of formation + Delta-G solvation = -172.600316 kcal Electronic energy + Delta-G solvation = -28217.594892 eV Core-core repulsion = 23875.500826 eV Total energy + Delta-G solvation = -4342.094066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.25267 -49.70013 -48.24034 -41.00250 -38.31105 -37.82506 -35.52008 -33.52956 -32.22576 -30.95215 -29.38764 -27.52334 -26.95609 -25.49407 -23.46408 -23.28091 -22.20587 -21.47715 -20.04497 -19.20864 -18.84302 -18.59041 -17.67827 -17.35858 -16.71249 -16.55734 -16.50777 -16.18581 -15.81986 -15.54889 -15.40225 -15.15850 -14.86722 -14.75457 -14.57751 -14.54823 -14.22688 -13.70656 -13.62604 -13.50165 -13.26672 -13.18262 -12.92548 -12.73797 -12.55453 -12.54747 -12.22985 -11.97547 -11.90681 -11.83424 -11.77151 -11.54589 -11.22062 -10.53756 -9.63351 -9.41303 -8.46566 -7.88217 -5.46608 0.18183 0.28061 1.38448 1.43817 1.51237 1.65516 2.46131 2.56805 2.60094 3.26525 3.50846 3.54999 3.74012 3.79081 3.88851 3.93146 4.05136 4.20843 4.28976 4.36836 4.42169 4.48246 4.62125 4.78304 4.91610 5.02445 5.08050 5.10313 5.11743 5.15253 5.21549 5.30219 5.36874 5.42475 5.51898 5.57381 5.65729 5.69026 5.78563 6.09532 6.50753 7.18128 7.83753 8.41404 9.13537 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010166 B = 0.006754 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.684543 B = 4144.686036 C = 6379.063227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.116 4.116 4 C 0.151 3.849 5 N -0.586 5.586 6 C -0.264 4.264 7 H 0.042 0.958 8 C -0.010 4.010 9 N -0.911 5.911 10 Si 0.939 3.061 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.290 1.290 14 C 0.209 3.791 15 C -0.161 4.161 16 C 0.115 3.885 17 F -0.144 7.144 18 C -0.183 4.183 19 C -0.058 4.058 20 C -0.205 4.205 21 C 0.127 3.873 22 O -0.325 6.325 23 C 0.406 3.594 24 F -0.206 7.206 25 F -0.206 7.206 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.026 0.974 33 H 0.031 0.969 34 H 0.052 0.948 35 H 0.252 0.748 36 H 0.037 0.963 37 H 0.058 0.942 38 H 0.154 0.846 39 H 0.175 0.825 40 H 0.151 0.849 41 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.001 -11.805 11.229 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.156 4.156 4 C 0.026 3.974 5 N -0.306 5.306 6 C -0.395 4.395 7 H 0.060 0.940 8 C -0.208 4.208 9 N -0.554 5.554 10 Si 0.767 3.233 11 H -0.195 1.195 12 H -0.213 1.213 13 H -0.216 1.216 14 C 0.083 3.917 15 C -0.166 4.166 16 C 0.095 3.905 17 F -0.123 7.123 18 C -0.201 4.201 19 C -0.076 4.076 20 C -0.224 4.224 21 C 0.083 3.917 22 O -0.242 6.242 23 C 0.317 3.683 24 F -0.188 7.188 25 F -0.188 7.188 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.172 0.828 39 H 0.192 0.808 40 H 0.168 0.832 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.781 -11.582 11.176 16.790 hybrid contribution 0.293 1.255 -1.037 1.654 sum 5.074 -10.326 10.139 15.336 Atomic orbital electron populations 1.21727 0.95414 1.01929 1.01200 1.21457 0.96233 0.95513 1.01990 1.21909 0.97873 0.96328 0.99513 1.20994 0.92335 0.85613 0.98426 1.43830 1.74533 1.11221 1.00995 1.18998 1.32577 0.95017 0.92870 0.94017 1.25736 0.96131 0.99909 0.99069 1.70042 1.28990 1.16142 1.40222 0.85664 0.78464 0.79320 0.79831 1.19526 1.21264 1.21639 1.19263 0.87905 0.98042 0.86532 1.20469 0.99353 0.97843 0.98904 1.17691 0.94503 0.88084 0.90258 1.91492 1.96685 1.58986 1.65118 1.21365 0.95156 1.01993 1.01629 1.21071 0.99792 0.92630 0.94081 1.21721 0.91270 1.04493 1.04904 1.18368 0.86308 0.92354 0.94668 1.86675 1.32578 1.47432 1.57529 1.24210 0.92562 0.77497 0.74010 1.93071 1.75674 1.64252 1.85812 1.93066 1.86908 1.86634 1.52209 0.91019 0.93121 0.94038 0.92303 0.90993 0.94584 0.95507 0.95030 0.92992 0.93857 0.94446 0.92433 0.82787 0.80795 0.83155 0.75425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.91 71.98 0.71 -3.06 16 2 C -0.11 -3.37 5.93 30.60 0.18 -3.18 16 3 C -0.12 -4.69 5.54 30.60 0.17 -4.52 16 4 C 0.15 6.57 5.68 86.38 0.49 7.06 16 5 N -0.59 -30.01 2.37 -706.33 -1.68 -31.69 16 6 C -0.26 -14.95 9.38 84.04 0.79 -14.17 16 7 H 0.04 2.43 7.90 -2.92 -0.02 2.41 16 8 C -0.01 -0.55 4.90 84.86 0.42 -0.14 16 9 N -0.91 -54.25 11.80 21.65 0.26 -54.00 16 10 Si 0.94 46.64 29.60 68.60 2.03 48.67 16 11 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 14 C 0.21 10.32 4.94 85.63 0.42 10.75 16 15 C -0.16 -6.85 5.47 -19.73 -0.11 -6.96 16 16 C 0.11 4.76 7.24 22.36 0.16 4.92 16 17 F -0.14 -6.95 16.55 44.97 0.74 -6.20 16 18 C -0.18 -5.70 10.02 22.33 0.22 -5.47 16 19 C -0.06 -1.48 10.04 22.25 0.22 -1.25 16 20 C -0.21 -5.82 8.26 22.37 0.18 -5.63 16 21 C 0.13 4.42 6.43 22.50 0.14 4.57 16 22 O -0.32 -9.85 8.31 -92.45 -0.77 -10.62 16 23 C 0.41 8.00 5.97 113.37 0.68 8.68 16 24 F -0.21 -4.51 15.58 44.97 0.70 -3.81 16 25 F -0.21 -4.39 15.58 44.97 0.70 -3.69 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.03 1.38 8.04 -2.39 -0.02 1.36 16 34 H 0.05 2.06 6.95 -2.39 -0.02 2.04 16 35 H 0.25 14.54 8.32 -92.71 -0.77 13.77 16 36 H 0.04 1.81 7.33 -2.39 -0.02 1.80 16 37 H 0.06 3.29 5.60 -2.39 -0.01 3.28 16 38 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 39 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.15 3.61 5.10 -2.91 -0.01 3.59 16 41 H 0.23 2.02 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -69.67 351.32 7.72 -61.95 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.04 Total: 7.81 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 4.69 Total: -8.42 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -1.42 Total: -85.68 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.77 Total: -10.62 kcal Atomic # 9 Polarization: -15.85 SS G_CDS: 2.15 Total: -13.70 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -69.67 7.72 -61.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207117848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.654 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds